**Instruments Affected**: NIRSpec
This is the validation notebook that displays the regression tests for the NIRSpec instrument in the JWST calibration pipeline. This notebook runs and displays the regression tests that are performed as a part of the normal software continuous integration process. For more information on the pipeline visit the links below.
Pipeline description: https://jwst-pipeline.readthedocs.io/en/latest/index.html
Pipeline code: https://github.com/spacetelescope/jwst
JWST regression tests are located in the regtest folder of the pipeline within the GitHub repository.
These are terms or acronymns used in this notebook that may not be known a general audience.
JWST: James Webb Space Telescope
NIRSpec: Near-Infrared Camera
Regression testing is a software testing method which checks if the pipeline step produces the expected outcome by comparing an input file with a truth file. Truth files for testing are stored in Artifactory.
Data used for regression tests is stored in Artifactory, and consists of a mix of simulated and ground testing data for the different instruments and modes.
import tempfile
import os
import pytest
import jwst
from IPython.display import IFrame
from IPython.core.display import HTML
Here we define any convenience functions to help with running the unit tests.
print("Testing JWST Pipeline {}".format(jwst.__version__))
jwst_dir = os.path.dirname(jwst.__file__)
regtest = os.path.join(jwst_dir, 'regtest')
associations = os.path.join(jwst_dir, 'associations')
datamodels = os.path.join(jwst_dir, 'datamodels')
stpipe = os.path.join(jwst_dir, 'stpipe')
with tempfile.TemporaryDirectory() as tmpdir:
outdir = os.path.join(tmpdir, 'regtest_report.html')
!pytest --bigdata {regtest} -k 'test_nirspec' -v --ignore={associations} --ignore={datamodels} --ignore={stpipe} --html={outdir} --self-contained-html
with open(os.path.join(tmpdir, "regtest_report.html")) as report_file:
html_report = "".join(report_file.readlines())
Testing JWST Pipeline 1.2.3 ============================= test session starts ============================== platform linux -- Python 3.8.10, pytest-6.2.4, py-1.10.0, pluggy-0.13.1 -- /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/bin/python cachedir: .pytest_cache metadata: {'Python': '3.8.10', 'Platform': 'Linux-3.10.0-1160.31.1.el7.x86_64-x86_64-with-glibc2.10', 'Packages': {'pytest': '6.2.4', 'py': '1.10.0', 'pluggy': '0.13.1'}, 'Plugins': {'asdf': '2.8.1', 'metadata': '1.11.0', 'jwst': '1.2.3', 'html': '3.1.1', 'forked': '1.3.0', 'xdist': '2.3.0', 'ci-watson': '0.5'}, 'BUILD_NUMBER': '90', 'BUILD_ID': '90', 'BUILD_URL': 'https://plwishmaster.stsci.edu:8081/job/Notebooks/job/jwst_validation_notebooks_spacetelescope/90/', 'NODE_NAME': 'jwcalibdev.stsci.edu', 'JOB_NAME': 'Notebooks/jwst_validation_notebooks_spacetelescope', 'BUILD_TAG': 'jenkins-Notebooks-jwst_validation_notebooks_spacetelescope-90', 'EXECUTOR_NUMBER': '10', 'JENKINS_URL': 'https://plwishmaster.stsci.edu:8081/', 'WORKSPACE': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope', 'GIT_COMMIT': 'a0fcf1da8e24c3771cfdd64717758394040055d7', 'GIT_URL': 'https://github.com/spacetelescope/jwst_validation_notebooks', 'GIT_BRANCH': 'origin/master'} rootdir: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope plugins: asdf-2.8.1, metadata-1.11.0, jwst-1.2.3, html-3.1.1, forked-1.3.0, xdist-2.3.0, ci-watson-0.5 collected 469 items / 302 deselected / 167 selected ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[assign_wcs] PASSED [ 0%] ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[extract_2d] FAILED [ 1%] 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'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308bc9580>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 ____________________ test_nirspec_brightobj_spec2[wavecorr] ____________________ run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..., 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 199 E b: 198 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 60 E b: 62 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630824f070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 ___________________ test_nirspec_brightobj_spec2[flat_field] ___________________ run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes... 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 208 E b: 207 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 60 E b: 62 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b2a0d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 _____________________ test_nirspec_brightobj_spec2[photom] _____________________ run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'photom' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_photom.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_photom.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 213 E b: 212 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 65 E b: 67 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b54f10>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 ____________________ test_nirspec_brightobj_spec2[calints] _____________________ run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'calints' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_calints.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_calints.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 216 E b: 215 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 65 E b: 67 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b62070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 ____________________ test_nirspec_brightobj_spec2[x1dints] _____________________ run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1dints' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_x1dints.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_x1dints.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 219 E b: 218 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 2 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -5.33232539934e-07 E Keyword SRCYPOS has different values: E a> 0.0 E b> -2.0494408111299e-06 E E Data contains differences: E Column FLUX data differs in row 4: E a> 5252083.361148835 E b> 5839510.679244995 E Column FLUX data differs in row 5: E a> 4869666.457176209 E b> 5723816.752433776 E Column FLUX data differs in row 6: E a> 3297265.112400055 E b> 4111152.648925782 E Column FLUX data differs in row 7: E a> 3075041.3164496426 E b> 3837684.2364668846 E Column FLUX data differs in row 8: E a> 5074391.007423401 E b> 6208268.165588379 E Column FLUX data differs in row 9: E a> 3532945.4243183145 E b> 4404144.197702408 E Column FLUX data differs in row 10: E a> 3064777.9405117035 E b> 3787600.3682613373 E Column FLUX data differs in row 11: E a> 4587812.4833107 E b> 5518095.61252594 E Column FLUX data differs in row 12: E a> 4692223.787307739 E b> 5792156.338691711 E Column FLUX data differs in row 13: E a> 3237568.736076356 E b> 4358486.771583557 E ...3191 additional difference(s) found. E ... E 3201 different table data element(s) found (8.68% different). E E Extension HDU 3 (EXTRACT1D, 2): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -5.33232539934e-07 E Keyword SRCYPOS has different values: E a> 0.0 E b> -2.0494408111299e-06 E E Data contains differences: E Column FLUX data differs in row 4: E a> -12219555.735588076 E b> -13271518.70727539 E Column FLUX data differs in row 5: E a> -9012681.30540848 E b> -9543453.81259918 E Column FLUX data differs in row 6: E a> -12670447.260141373 E b> -13155812.919139866 E Column FLUX data differs in row 7: E a> -10005099.35617447 E b> -10994460.940361023 E Column FLUX data differs in row 8: E a> -10103163.421154022 E b> -10879022.479057312 E Column FLUX data differs in row 9: E a> -9251464.724540712 E b> -9879301.190376282 E Column FLUX data differs in row 10: E a> -10005953.580141068 E b> -10359490.692615509 E Column FLUX data differs in row 11: E a> -11743096.232414247 E b> -12350980.758666992 E Column FLUX data differs in row 12: E a> -11047315.418720245 E b> -11685196.51889801 E Column FLUX data differs in row 13: E a> -12650693.416595463 E b> -13656512.022018433 E ...3191 additional difference(s) found. E ... E 3201 different table data element(s) found (8.68% different). E E Extension HDU 4 (EXTRACT1D, 3): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -5.33232539934e-07 E Keyword SRCYPOS has different values: E a> 0.0 E b> -2.0494408111299e-06 E E Data contains differences: E Column FLUX data differs in row 4: E a> -1703198.3137130742 E b> -1409407.8540802002 E Column FLUX data differs in row 5: E a> -966681.9237172606 E b> -754383.9626014231 E Column FLUX data differs in row 6: E a> -6079436.887055635 E b> -6127976.574003697 E Column FLUX data differs in row 7: E a> -4843835.3687524805 E b> -5001724.869012833 E Column FLUX data differs in row 8: E a> -4864043.176174164 E b> -5217665.135860443 E Column FLUX data differs in row 9: E a> -2234757.483005524 E b> -2022011.2800598145 E Column FLUX data differs in row 10: E a> -2243448.8981962204 E b> -2404173.821210861 E Column FLUX data differs in row 11: E a> -3476174.6525764475 E b> -3255656.599998474 E Column FLUX data differs in row 12: E a> -2331014.8119926453 E b> -2176809.549331665 E Column FLUX data differs in row 13: E a> -1589942.5894021993 E b> -1126596.2570905685 E ...3183 additional difference(s) found. E ... E 3193 different table data element(s) found (8.66% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307ae4e80>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 ________________________ test_nirspec_nrs2_nodata_strun ________________________ _jail = '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_strun0' rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ut': None, 'remote_results_path': None, 'test_name': None, 'traceback': None, 'truth': None, 'truth_remote': None} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} caplog = <_pytest.logging.LogCaptureFixture object at 0x7f63081ff610> @pytest.mark.bigdata def test_nirspec_nrs2_nodata_strun(_jail, rtdata, fitsdiff_default_kwargs, caplog): """ Test of calwebb_spec2 pipeline performed on NIRSpec IFU exposure that has a filter/grating combination that produces no data on the NRS2 detector. Pipeline should return with non-zero exit status. """ # Get the input file rtdata.get_data('nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits') # Call the Spec2Pipeline cmd = [ 'strun', 'jwst.pipeline.Spec2Pipeline', rtdata.input] > status = subprocess.run(cmd) /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py:108: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/subprocess.py:493: in run with Popen(*popenargs, **kwargs) as process: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/subprocess.py:858: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <subprocess.Popen object at 0x7f6308bbd280> args = ['strun', 'jwst.pipeline.Spec2Pipeline', '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_strun0/jw84700006001_02101_00001_nrs2_rate.fits'] executable = b'strun', preexec_fn = None, close_fds = True, pass_fds = () cwd = None, env = None, startupinfo = None, creationflags = 0, shell = False p2cread = -1, p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1 errwrite = -1, restore_signals = True, start_new_session = False def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, start_new_session): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and not close_fds and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session): self._posix_spawn(args, executable, env, restore_signals, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _posixsubprocess.fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, preexec_fn) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) child_exec_never_called = (err_msg == "noexec") if child_exec_never_called: err_msg = "" # The error must be from chdir(cwd). err_filename = cwd else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: 'strun' /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/subprocess.py:1704: FileNotFoundError ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 _________________ test_nirspec_fs_spec2[fullframe-extract_2d] __________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636940b4f0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 __________________ test_nirspec_fs_spec2[fullframe-wavecorr] ___________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...r.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 67 E b: 69 E Extra keyword 'SRCXPOS' in b: 0.004938526981283373 E Extra keyword 'SRCYPOS' in b: -0.02795306204991911 E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63683ea6a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 _________________ test_nirspec_fs_spec2[fullframe-flat_field] __________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 67 E b: 69 E Extra keyword 'SRCXPOS' in b: 0.004938526981283373 E Extra keyword 'SRCYPOS' in b: -0.02795306204991911 E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 20 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 21 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 22 (FLATFIELD_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 23 (FLATFIELD_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 24 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 26 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 27 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 28 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 29 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 30 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 31 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 32 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 33 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 34 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 35 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 36 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 37 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630662f1c0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 __________________ test_nirspec_fs_spec2[fullframe-pathloss] ___________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 26 (FLATFIELD_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 27 (FLATFIELD_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 28 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 29 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 30 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 31 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 32 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 33 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 34 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 35 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 36 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 37 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 38 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 39 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 40 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 41 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 42 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 43 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 44 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 45 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367b9ea00>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 ___________________ test_nirspec_fs_spec2[fullframe-srctype] ___________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...pe.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6369565670>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 _____________________ test_nirspec_fs_spec2[fullframe-cal] _____________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 26 (FLATFIELD_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 27 (FLATFIELD_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 28 (PHOTOM_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 29 (PHOTOM_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 30 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 31 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 32 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 33 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 43 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 44 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 45 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 46 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368cc2c70>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 _____________________ test_nirspec_fs_spec2[fullframe-s2d] _____________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63681e03a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 _____________________ test_nirspec_fs_spec2[fullframe-x1d] _____________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_x1d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (EXTRACT1D, 3): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630763f640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 ______________ test_nirspec_fs_spec2[S400A1-subarray-extract_2d] _______________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308022340>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 _______________ test_nirspec_fs_spec2[S400A1-subarray-wavecorr] ________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...r.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 46 E b: 48 E Extra keyword 'SRCXPOS' in b: -1.4909106595922e-05 E Extra keyword 'SRCYPOS' in b: -0.02798525129989059 E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63084dc910>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 ______________ test_nirspec_fs_spec2[S400A1-subarray-flat_field] _______________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 46 E b: 48 E Extra keyword 'SRCXPOS' in b: -1.4909106595922e-05 E Extra keyword 'SRCYPOS' in b: -0.02798525129989059 E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (FLATFIELD_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (FLATFIELD_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308abcb20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 _______________ test_nirspec_fs_spec2[S400A1-subarray-pathloss] ________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (FLATFIELD_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (FLATFIELD_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636840eac0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 ________________ test_nirspec_fs_spec2[S400A1-subarray-srctype] ________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...pe.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368cc2c40>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 __________________ test_nirspec_fs_spec2[S400A1-subarray-cal] __________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s2_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (FLATFIELD_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (FLATFIELD_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 10 (PHOTOM_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 11 (PHOTOM_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308adee80>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 __________________ test_nirspec_fs_spec2[S400A1-subarray-s2d] __________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s2_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63079c62e0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 __________________ test_nirspec_fs_spec2[S400A1-subarray-x1d] __________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s2_x1d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307f54e20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 _____________ test_nirspec_fs_spec2[ALLSLITS-subarray-extract_2d] ______________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63084dc400>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 ______________ test_nirspec_fs_spec2[ALLSLITS-subarray-wavecorr] _______________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...r.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367c115b0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 _____________ test_nirspec_fs_spec2[ALLSLITS-subarray-flat_field] ______________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 20 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 21 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 25 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368f6cfa0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 ______________ test_nirspec_fs_spec2[ALLSLITS-subarray-pathloss] _______________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 26 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 27 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 28 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 29 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 30 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 31 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 32 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 33 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 34 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368db5700>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 _______________ test_nirspec_fs_spec2[ALLSLITS-subarray-srctype] _______________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...pe.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6309887eb0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 _________________ test_nirspec_fs_spec2[ALLSLITS-subarray-cal] _________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 26 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 27 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 28 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 29 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 30 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 31 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 32 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 33 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 34 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63084e9e20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 _________________ test_nirspec_fs_spec2[ALLSLITS-subarray-s2d] _________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63695a4ee0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 __________________________ test_nirspec_fs_spec3[crf] __________________________ run_pipeline = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'crf' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [35, 11]: E a> 33816576 E ? ^^ E b> 33816593 E ? ^^ E Data differs at [432, 15]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [544, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [109, 21]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [317, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1168, 28]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [625, 33]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [379, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [380, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E Extension HDU 9 (DQ, 2): E E Data contains differences: E Data differs at [730, 9]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [674, 10]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [306, 11]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1336, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [452, 18]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1198, 22]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [93, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1122, 26]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [565, 41]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E Extension HDU 16 (DQ, 3): E E Data contains differences: E Data differs at [703, 8]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [35, 11]: E a> 33816576 E ? ^^ E b> 33816593 E ? ^^ E Data differs at [432, 15]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [544, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1144, 19]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [109, 21]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [625, 33]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [379, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [380, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E Extension HDU 23 (DQ, 4): E E Data contains differences: E Data differs at [674, 10]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [306, 11]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1336, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1198, 22]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [93, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1831, 24]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1122, 26]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1164, 39]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [754, 40]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1660, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 10 different pixels found (0.01% different). E E Extension HDU 30 (DQ, 5): E E Data contains differences: E Data differs at [674, 10]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [306, 11]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1336, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1198, 22]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [93, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1122, 26]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1164, 39]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [565, 41]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1660, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63685e2b80>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:46: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 __________________________ test_nirspec_fs_spec3[s2d] __________________________ run_pipeline = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 0.0002, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.01, Absolute tolerance: 0.0002 E E Extension HDU 1 (SCI, 1): E E Data contains differences: E Data differs at [36, 1]: E a> 33.11916 E b> 34.672256 E Data differs at [37, 1]: E a> 28.968235 E b> 27.085396 E Data differs at [704, 3]: E a> 30.883917 E b> 33.912716 E Data differs at [705, 3]: E a> 27.651571 E b> 31.413282 E Data differs at [2027, 3]: E a> -8.060477 E b> -25.82998 E Data differs at [2028, 3]: E a> 26.505146 E b> -28.224813 E Data differs at [704, 4]: E a> 33.062157 E b> 33.914352 E Data differs at [705, 4]: E a> 32.35609 E b> 33.373066 E Data differs at [1971, 4]: E a> -20.490318 E b> -29.006193 E Data differs at [1972, 4]: E a> -16.847645 E b> -30.439941 E ... E 86 different pixels found (0.06% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133403 different pixels found (99.73% different). E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [36, 1]: E a> 0.7884687 E b> 0.5702864 E Data differs at [37, 1]: E a> 0.5679413 E b> 0.026298497 E Data differs at [704, 3]: E a> 0.78772396 E b> 0.6457121 E Data differs at [705, 3]: E a> 0.78301054 E b> 0.5770483 E Data differs at [2027, 3]: E a> 1.2563422 E b> 1.1624389 E Data differs at [2028, 3]: E a> 0.9187524 E b> 0.7093565 E Data differs at [704, 4]: E a> 0.7875935 E b> 0.7476469 E Data differs at [705, 4]: E a> 0.78308487 E b> 0.7341094 E Data differs at [1971, 4]: E a> 1.5306216 E b> 1.269689 E Data differs at [1972, 4]: E a> 1.530625 E b> 1.1257659 E ... E 91 different pixels found (0.07% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133393 different pixels found (99.73% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133398 different pixels found (99.73% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133403 different pixels found (99.73% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63663e1070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:46: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 __________________________ test_nirspec_fs_spec3[x1d] __________________________ run_pipeline = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Headers have different number of cards: E a: 73 E b: 74 E Extra keyword 'SRCTYPE' in b: 'POINT' E E Data contains differences: E Column FLUX data differs in row 1166: E a> 20552185.34485313 E b> -2275204.5859990204 E Column FLUX data differs in row 1167: E a> 214990901.62202883 E b> 216343639.0930421 E Column FLUX data differs in row 1388: E a> 2518372174.9189553 E b> -173082809.74596182 E Column FLUX data differs in row 1389: E a> 244159868.5289282 E b> -196176042.26819104 E Column FLUX data differs in row 2417: E a> -180719724.93147817 E b> -205129919.95675185 E Column FLUX data differs in row 2418: E a> -184725402.79672292 E b> -197045698.6753315 E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E ...10022 additional difference(s) found. E ... E 10032 different table data element(s) found (16.67% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63681bd0d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:46: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 _________________________________ test_photom __________________________________ run_photom = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...S1_photom.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata def test_photom(run_photom, fitsdiff_default_kwargs): """Regression test matching output files""" > rt.is_like_truth(run_photom, fitsdiff_default_kwargs, 'photom', truth_path=TRUTH_PATH) E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/truth/jwdata0010010_11010_0001_NRS1_photom.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 207 E b: 216 E Extra keyword 'EPH_TIME' in b: 0.0 E Extra keyword 'JWST_DX' in b: 0.0 E Extra keyword 'JWST_DY' in b: 0.0 E Extra keyword 'JWST_DZ' in b: 0.0 E Extra keyword 'JWST_X' in b: 0.0 E Extra keyword 'JWST_Y' in b: 0.0 E Extra keyword 'JWST_Z' in b: 0.0 E Extra keyword 'REFFRAME' in b: 'N/A' E Inconsistent duplicates of keyword '' : E Occurs 44 time(s) in a, 45 times in (b) E Keyword [9] has different values: E a> Aperture information E b> JWST ephemeris information E Keyword [10] has different values: E a> Time information E b> Aperture information E Keyword [11] has different values: E a> Guide star information E b> Time information E Keyword [12] has different values: E a> Reference file information E b> Guide star information E Keyword [13] has different values: E a> CRDS parameters E b> Reference file information E Keyword [14] has different values: E a> Pixel area reference file information E b> CRDS parameters E Keyword [15] has different values: E a> Nirspec Camera reference file information E ? ^ -- --- ---- E b> Pixel area reference file information E ? ^ +++++ E Keyword [16] has different values: E a> Nirspec Collimator reference file information E ? ^^^^ --- E b> Nirspec Camera reference file information E ? ^ ++ E Keyword [17] has different values: E a> Dark reference file information E ? ^ - E b> Nirspec Collimator reference file information E ? ^^^^^^^^^^^^^^ ++ E Keyword [18] has different values: E a> Disperser reference file information E ? ^^^^ ^^^ E b> Dark reference file information E ? ^ ^ E Keyword [19] has different values: E a> Distortion reference file information E ? ^^ ^^^^ E b> Disperser reference file information E ? ^^ ^^^ E Keyword [20] has different values: E a> Filter Offset reference file information E ? ^ ^ ^ ------ E b> Distortion reference file information E ? ^ ^ ^ +++ E Keyword [21] has different values: E a> Flat reference file information E ? - E b> Filter Offset reference file information E ? + +++++++++ E Keyword [22] has different values: E a> DFlat reference file information E ? - E b> Flat reference file information E Keyword [23] has different values: E a> FFlat reference file information E ? ^ E b> DFlat reference file information E ? ^ E Keyword [24] has different values: E a> SFlat reference file information E ? ^ E b> FFlat reference file information E ? ^ E Keyword [25] has different values: E a> Nirspec FORE Model reference file information E ? ^^^^^^^^ -------- E b> SFlat reference file information E ? ^ ++ E Keyword [26] has different values: E a> Nirspec FPA Model reference file information E ? ^^ E b> Nirspec FORE Model reference file information E ? ^^^ E Keyword [27] has different values: E a> Gain reference file information E b> Nirspec FPA Model reference file information E Keyword [28] has different values: E a> IFU fore reference file information E ? ^^^^^^^^ E b> Gain reference file information E ? ^^^^ E Keyword [29] has different values: E a> IFU post reference file information E ? ^ ^^ E b> IFU fore reference file information E ? ^ ^^ E Keyword [30] has different values: E a> IFU slicer reference file information E ? ^^^^^ E b> IFU post reference file information E ? ++ ^ E Keyword [31] has different values: E a> Linearity reference file information E ? ^ ^ - --- E b> IFU slicer reference file information E ? ^^^^^^ ^ E Keyword [32] has different values: E a> Mask reference file information E ? ^ ^^ E b> Linearity reference file information E ? ^^^^ ^^^^ E Keyword [33] has different values: E a> Nirspec MSA Model reference file information E b> Mask reference file information E Keyword [34] has different values: E a> Nirspec OTE Model reference file information E ? ^^^ E b> Nirspec MSA Model reference file information E ? ^^^ E Keyword [35] has different values: E a> Pathloss reference file information E b> Nirspec OTE Model reference file information E Keyword [36] has different values: E a> Photometric reference file information E ? ^^^^^^^^ E b> Pathloss reference file information E ? ++ + ^^ E Keyword [37] has different values: E a> Read noise reference file information E ? ^ ^^^^^ ^^ E b> Photometric reference file information E ? ^^^^^^ ^^ ^ E Keyword [38] has different values: E a> Reference pixels reference file information E ? ^ ------------ E b> Read noise reference file information E ? ^^^^^^^ E Keyword [39] has different values: E a> Regions reference file information E ? ^ ^^ E b> Reference pixels reference file information E ? ^^^^^^^^^ ^^^ E Keyword [40] has different values: E a> Saturation reference file information E ? ^^^^^^^ E b> Regions reference file information E ? ^^^ + E Keyword [41] has different values: E a> Spectral distortion reference file information E ? ^^^ -------- E b> Saturation reference file information E ? ^ + E Keyword [42] has different values: E a> Superbias reference file information E ? - ^ - E b> Spectral distortion reference file information E ? ++ ^^^^ +++++++ E Keyword [43] has different values: E a> Wavelength Range reference file information E b> Superbias reference file information E Keyword [44] has different values: E a> Calibration step information E b> Wavelength Range reference file information E Keyword FILENAME has different values: E a> jwdata0010010_11010_0001_NRS1_photom.fits E b> jwdata0010010_11010_0001_NRS1_photomstep.fits E ? ++++ E Keyword GWA_XTIL has different comments: E a> Grating wheel tilt along instrmnt model Y axis E b> Grating Y tilt angle relative to mirror E Keyword GWA_YTIL has different comments: E a> Grating wheel tilt along instrmnt model X axis E b> Grating X tilt angle relative to mirror E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 57 E b: 54 E Extra keyword 'EPH_TIME' in a: 0.0 E Extra keyword 'REFFRAME' in a: 'N/A' E Inconsistent duplicates of keyword '' : E Occurs 3 time(s) in a, 2 times in (b) E Keyword has different values: E a> JWST ephemeris information E b> Photometry information E Keyword [2] has different values: E a> Photometry information E b> WCS parameters E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63478a5910>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py:83: AssertionError ---------------------------- Captured stderr setup ----------------------------- 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 2021-08-21 06:03:07,191 - stpipe.photom - INFO - PhotomStep instance created. 2021-08-21 06:03:07,191 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:03:07,191 - stpipe - INFO - OS: Linux 2021-08-21 06:03:07,377 - stpipe.photom - INFO - Step photom running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). 2021-08-21 06:03:07,378 - stpipe.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} 2021-08-21 06:03:09,961 - stpipe.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits 2021-08-21 06:03:09,961 - stpipe.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits 2021-08-21 06:03:12,962 - stpipe.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:03:12,962 - stpipe.photom - INFO - detector: NRS1 2021-08-21 06:03:12,962 - stpipe.photom - INFO - exp_type: NRS_IFU 2021-08-21 06:03:12,962 - stpipe.photom - INFO - filter: F290LP 2021-08-21 06:03:12,962 - stpipe.photom - INFO - grating: G395H 2021-08-21 06:03:13,014 - stpipe.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:04:21,937 - stpipe.photom - INFO - Saved model in jwdata0010010_11010_0001_NRS1_photom.fits 2021-08-21 06:04:21,937 - stpipe.photom - INFO - Step photom done ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.photom:step.py:321 PhotomStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.photom:step.py:367 Step photom running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). INFO stpipe.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} DEBUG stpipe.photom:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.photom:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.photom:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.photom:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.photom:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.photom:photom_step.py:33 Input is IFUImageModel DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits INFO stpipe.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.photom:photom.py:142 detector: NRS1 INFO stpipe.photom:photom.py:142 detector: NRS1 INFO stpipe.photom:photom.py:143 exp_type: NRS_IFU INFO stpipe.photom:photom.py:143 exp_type: NRS_IFU INFO stpipe.photom:photom.py:145 filter: F290LP INFO stpipe.photom:photom.py:145 filter: F290LP INFO stpipe.photom:photom.py:149 grating: G395H INFO stpipe.photom:photom.py:149 grating: G395H DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:photom.py:268 Converting conversion factor from flux to surface brightness DEBUG stpipe.photom:photom.py:268 Converting conversion factor from flux to surface brightness INFO stpipe.photom:photom.py:274 PHOTMJSR value: 4.25452e+10 INFO stpipe.photom:photom.py:274 PHOTMJSR value: 4.25452e+10 DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:photom.py:619 Slice 0: 274 2047 780 830 DEBUG stpipe.photom:photom.py:619 Slice 0: 274 2047 780 830 DEBUG stpipe.photom:photom.py:619 Slice 1: 311 2047 1196 1248 DEBUG stpipe.photom:photom.py:619 Slice 1: 311 2047 1196 1248 DEBUG stpipe.photom:photom.py:619 Slice 2: 270 2047 730 781 DEBUG stpipe.photom:photom.py:619 Slice 2: 270 2047 730 781 DEBUG stpipe.photom:photom.py:619 Slice 3: 316 2047 1245 1297 DEBUG stpipe.photom:photom.py:619 Slice 3: 316 2047 1245 1297 DEBUG stpipe.photom:photom.py:619 Slice 4: 265 2047 681 732 DEBUG stpipe.photom:photom.py:619 Slice 4: 265 2047 681 732 DEBUG stpipe.photom:photom.py:619 Slice 5: 320 2047 1295 1346 DEBUG stpipe.photom:photom.py:619 Slice 5: 320 2047 1295 1346 DEBUG stpipe.photom:photom.py:619 Slice 6: 261 2047 632 682 DEBUG stpipe.photom:photom.py:619 Slice 6: 261 2047 632 682 DEBUG stpipe.photom:photom.py:619 Slice 7: 325 2047 1344 1395 DEBUG stpipe.photom:photom.py:619 Slice 7: 325 2047 1344 1395 DEBUG stpipe.photom:photom.py:619 Slice 8: 257 2047 583 633 DEBUG stpipe.photom:photom.py:619 Slice 8: 257 2047 583 633 DEBUG stpipe.photom:photom.py:619 Slice 9: 330 2047 1393 1445 DEBUG stpipe.photom:photom.py:619 Slice 9: 330 2047 1393 1445 DEBUG stpipe.photom:photom.py:619 Slice 10: 253 2047 533 584 DEBUG stpipe.photom:photom.py:619 Slice 10: 253 2047 533 584 DEBUG stpipe.photom:photom.py:619 Slice 11: 335 2047 1441 1494 DEBUG stpipe.photom:photom.py:619 Slice 11: 335 2047 1441 1494 DEBUG stpipe.photom:photom.py:619 Slice 12: 249 2047 484 534 DEBUG stpipe.photom:photom.py:619 Slice 12: 249 2047 484 534 DEBUG stpipe.photom:photom.py:619 Slice 13: 339 2047 1490 1543 DEBUG stpipe.photom:photom.py:619 Slice 13: 339 2047 1490 1543 DEBUG stpipe.photom:photom.py:619 Slice 14: 245 2047 435 485 DEBUG stpipe.photom:photom.py:619 Slice 14: 245 2047 435 485 DEBUG stpipe.photom:photom.py:619 Slice 15: 344 2047 1539 1592 DEBUG stpipe.photom:photom.py:619 Slice 15: 344 2047 1539 1592 DEBUG stpipe.photom:photom.py:619 Slice 16: 241 2047 385 436 DEBUG stpipe.photom:photom.py:619 Slice 16: 241 2047 385 436 DEBUG stpipe.photom:photom.py:619 Slice 17: 349 2047 1588 1641 DEBUG stpipe.photom:photom.py:619 Slice 17: 349 2047 1588 1641 DEBUG stpipe.photom:photom.py:619 Slice 18: 237 2047 336 387 DEBUG stpipe.photom:photom.py:619 Slice 18: 237 2047 336 387 DEBUG stpipe.photom:photom.py:619 Slice 19: 354 2047 1637 1690 DEBUG stpipe.photom:photom.py:619 Slice 19: 354 2047 1637 1690 DEBUG stpipe.photom:photom.py:619 Slice 20: 234 2047 287 337 DEBUG stpipe.photom:photom.py:619 Slice 20: 234 2047 287 337 DEBUG stpipe.photom:photom.py:619 Slice 21: 359 2047 1686 1739 DEBUG stpipe.photom:photom.py:619 Slice 21: 359 2047 1686 1739 DEBUG stpipe.photom:photom.py:619 Slice 22: 230 2047 237 288 DEBUG stpipe.photom:photom.py:619 Slice 22: 230 2047 237 288 DEBUG stpipe.photom:photom.py:619 Slice 23: 364 2047 1735 1789 DEBUG stpipe.photom:photom.py:619 Slice 23: 364 2047 1735 1789 DEBUG stpipe.photom:photom.py:619 Slice 24: 226 2047 188 238 DEBUG stpipe.photom:photom.py:619 Slice 24: 226 2047 188 238 DEBUG stpipe.photom:photom.py:619 Slice 25: 369 2047 1783 1838 DEBUG stpipe.photom:photom.py:619 Slice 25: 369 2047 1783 1838 DEBUG stpipe.photom:photom.py:619 Slice 26: 222 2047 139 189 DEBUG stpipe.photom:photom.py:619 Slice 26: 222 2047 139 189 DEBUG stpipe.photom:photom.py:619 Slice 27: 374 2047 1832 1887 DEBUG stpipe.photom:photom.py:619 Slice 27: 374 2047 1832 1887 DEBUG stpipe.photom:photom.py:619 Slice 28: 218 2047 89 139 DEBUG stpipe.photom:photom.py:619 Slice 28: 218 2047 89 139 DEBUG stpipe.photom:photom.py:619 Slice 29: 379 2047 1881 1936 DEBUG stpipe.photom:photom.py:619 Slice 29: 379 2047 1881 1936 INFO stpipe.photom:step.py:928 Saved model in jwdata0010010_11010_0001_NRS1_photom.fits INFO stpipe.photom:step.py:470 Step photom done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 ____________________ test_nirspec_lamp_fs_spec2[extract_2d] ____________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSTRT2 has different values: E a> 918 E b> 919 E E Data contains differences: E Data differs at [1, 1]: E a> 7.8790336 E b> 7.895912 E Data differs at [2, 1]: E a> 7.1727624 E b> 7.138387 E Data differs at [3, 1]: E a> 7.1864924 E b> 7.7791295 E Data differs at [4, 1]: E a> 8.488396 E b> 8.30729 E Data differs at [5, 1]: E a> 8.091365 E b> 8.075245 E Data differs at [6, 1]: E a> 7.611582 E b> 7.285578 E Data differs at [7, 1]: E a> 7.6412067 E b> 7.6529727 E Data differs at [8, 1]: E a> 8.311155 E b> 8.707414 E Data differs at [9, 1]: E a> 7.9412 E b> 9.288069 E Data differs at [10, 1]: E a> 7.9953065 E b> 8.11928 E ... E 60297 different pixels found (99.76% different). E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [54, 1]: E a> 0 E b> 4 E Data differs at [91, 1]: E a> 0 E b> 4 E Data differs at [113, 1]: E a> 4 E b> 0 E Data differs at [134, 1]: E a> 0 E b> 4 E Data differs at [147, 1]: E a> 0 E b> 4 E Data differs at [157, 1]: E a> 0 E b> 4 E Data differs at [161, 1]: E a> 4 E b> 0 E Data differs at [192, 1]: E a> 0 E b> 4 E Data differs at [215, 1]: E a> 4 E b> 0 E Data differs at [236, 1]: E a> 0 E b> 4 E ... E 6325 different pixels found (10.46% different). E E Extension HDU 3 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.43525583 E b> 0.434676 E Data differs at [2, 1]: E a> 0.41344056 E b> 0.40850815 E Data differs at [3, 1]: E a> 0.42419714 E b> 0.45107073 E Data differs at [4, 1]: E a> 0.43999326 E b> 0.45117962 E Data differs at [5, 1]: E a> 0.41931367 E b> 0.4294056 E Data differs at [6, 1]: E a> 0.42927435 E b> 0.39980277 E Data differs at [7, 1]: E a> 0.42770875 E b> 0.40669695 E Data differs at [8, 1]: E a> 0.43864995 E b> 0.45259553 E Data differs at [9, 1]: E a> 0.41494167 E b> 0.533785 E Data differs at [10, 1]: E a> 0.46476573 E b> 0.43006828 E ... E 60299 different pixels found (99.76% different). E E Extension HDU 4 (WAVELENGTH, 1): E E Data contains differences: E Data differs at [1, 4]: E a> nan E b> 0.992814 E Data differs at [2, 4]: E a> nan E b> 0.9934496 E Data differs at [3, 4]: E a> nan E b> 0.9940852 E Data differs at [4, 4]: E a> nan E b> 0.9947208 E Data differs at [5, 4]: E a> nan E b> 0.9953564 E Data differs at [6, 4]: E a> nan E b> 0.99599195 E Data differs at [7, 4]: E a> nan E b> 0.99662757 E Data differs at [8, 4]: E a> nan E b> 0.99726313 E Data differs at [9, 4]: E a> nan E b> 0.9978987 E Data differs at [10, 4]: E a> nan E b> 0.99853426 E ... E 45612 different pixels found (75.46% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.12939285 E b> 0.13782738 E Data differs at [2, 1]: E a> 0.12229334 E b> 0.10630864 E Data differs at [3, 1]: E a> 0.1294325 E b> 0.12811598 E Data differs at [4, 1]: E a> 0.13293746 E b> 0.14354621 E Data differs at [5, 1]: E a> 0.11721945 E b> 0.12080387 E Data differs at [6, 1]: E a> 0.12068921 E b> 0.101559065 E Data differs at [7, 1]: E a> 0.12608178 E b> 0.105102286 E Data differs at [8, 1]: E a> 0.13768041 E b> 0.14537552 E Data differs at [9, 1]: E a> 0.12573494 E b> 0.17241931 E Data differs at [10, 1]: E a> 0.15676537 E b> 0.13223708 E ... E 60301 different pixels found (99.77% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.06005479 E b> 0.05111583 E Data differs at [2, 1]: E a> 0.048639752 E b> 0.060570274 E Data differs at [3, 1]: E a> 0.0505107 E b> 0.075348824 E Data differs at [4, 1]: E a> 0.060656607 E b> 0.060016852 E Data differs at [5, 1]: E a> 0.058604494 E b> 0.06358531 E Data differs at [6, 1]: E a> 0.06358726 E b> 0.058283202 E Data differs at [7, 1]: E a> 0.056852985 E b> 0.060300127 E Data differs at [8, 1]: E a> 0.05473337 E b> 0.0594672 E Data differs at [9, 1]: E a> 0.046441663 E b> 0.11250708 E Data differs at [10, 1]: E a> 0.059241798 E b> 0.052721653 E ... E 60304 different pixels found (99.77% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63687c9640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:48: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 ____________________ test_nirspec_lamp_fs_spec2[flat_field] ____________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSTRT2 has different values: E a> 918 E b> 919 E E Data contains differences: E Data differs at [1, 1]: E a> 7.8790336 E b> 7.895912 E Data differs at [2, 1]: E a> 7.1727624 E b> 7.138387 E Data differs at [3, 1]: E a> 7.1864924 E b> 7.7791295 E Data differs at [4, 1]: E a> 8.488396 E b> 8.30729 E Data differs at [5, 1]: E a> 8.091365 E b> 8.075245 E Data differs at [6, 1]: E a> 7.611582 E b> 7.285578 E Data differs at [7, 1]: E a> 7.6412067 E b> 7.6529727 E Data differs at [8, 1]: E a> 8.311155 E b> 8.707414 E Data differs at [9, 1]: E a> 7.9412 E b> 9.288069 E Data differs at [10, 1]: E a> 7.9953065 E b> 8.11928 E ... E 60298 different pixels found (99.76% different). E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [54, 1]: E a> 1 E b> 5 E Data differs at [91, 1]: E a> 1 E b> 5 E Data differs at [113, 1]: E a> 5 E b> 1 E Data differs at [134, 1]: E a> 1 E b> 5 E Data differs at [147, 1]: E a> 1 E b> 5 E Data differs at [157, 1]: E a> 1 E b> 5 E Data differs at [161, 1]: E a> 5 E b> 1 E Data differs at [192, 1]: E a> 1 E b> 5 E Data differs at [215, 1]: E a> 5 E b> 1 E Data differs at [236, 1]: E a> 1 E b> 5 E ... E 8851 different pixels found (14.64% different). E E Extension HDU 3 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.43525583 E b> 0.434676 E Data differs at [2, 1]: E a> 0.41344056 E b> 0.40850815 E Data differs at [3, 1]: E a> 0.42419714 E b> 0.45107073 E Data differs at [4, 1]: E a> 0.43999326 E b> 0.45117962 E Data differs at [5, 1]: E a> 0.41931367 E b> 0.4294056 E Data differs at [6, 1]: E a> 0.42927435 E b> 0.39980277 E Data differs at [7, 1]: E a> 0.42770875 E b> 0.40669695 E Data differs at [8, 1]: E a> 0.43864995 E b> 0.45259553 E Data differs at [9, 1]: E a> 0.41494167 E b> 0.533785 E Data differs at [10, 1]: E a> 0.46476573 E b> 0.43006828 E ... E 60302 different pixels found (99.77% different). E E Extension HDU 4 (WAVELENGTH, 1): E E Data contains differences: E Data differs at [1, 4]: E a> nan E b> 0.992814 E Data differs at [2, 4]: E a> nan E b> 0.9934496 E Data differs at [3, 4]: E a> nan E b> 0.9940852 E Data differs at [4, 4]: E a> nan E b> 0.9947208 E Data differs at [5, 4]: E a> nan E b> 0.9953564 E Data differs at [6, 4]: E a> nan E b> 0.99599195 E Data differs at [7, 4]: E a> nan E b> 0.99662757 E Data differs at [8, 4]: E a> nan E b> 0.99726313 E Data differs at [9, 4]: E a> nan E b> 0.9978987 E Data differs at [10, 4]: E a> nan E b> 0.99853426 E ... E 45612 different pixels found (75.46% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.12939285 E b> 0.13782738 E Data differs at [2, 1]: E a> 0.12229334 E b> 0.10630864 E Data differs at [3, 1]: E a> 0.1294325 E b> 0.12811598 E Data differs at [4, 1]: E a> 0.13293746 E b> 0.14354621 E Data differs at [5, 1]: E a> 0.11721945 E b> 0.12080387 E Data differs at [6, 1]: E a> 0.12068921 E b> 0.101559065 E Data differs at [7, 1]: E a> 0.12608178 E b> 0.105102286 E Data differs at [8, 1]: E a> 0.13768041 E b> 0.14537552 E Data differs at [9, 1]: E a> 0.12573494 E b> 0.17241931 E Data differs at [10, 1]: E a> 0.15676537 E b> 0.13223708 E ... E 60305 different pixels found (99.77% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.06005479 E b> 0.05111583 E Data differs at [2, 1]: E a> 0.048639752 E b> 0.060570274 E Data differs at [3, 1]: E a> 0.0505107 E b> 0.075348824 E Data differs at [4, 1]: E a> 0.060656607 E b> 0.060016852 E Data differs at [5, 1]: E a> 0.058604494 E b> 0.06358531 E Data differs at [6, 1]: E a> 0.06358726 E b> 0.058283202 E Data differs at [7, 1]: E a> 0.056852985 E b> 0.060300127 E Data differs at [8, 1]: E a> 0.05473337 E b> 0.0594672 E Data differs at [9, 1]: E a> 0.046441663 E b> 0.11250708 E Data differs at [10, 1]: E a> 0.059241798 E b> 0.052721653 E ... E 60301 different pixels found (99.77% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636912fb20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:48: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 _______________________ test_nirspec_lamp_fs_spec2[cal] ________________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSTRT2 has different values: E a> 918 E b> 919 E E Data contains differences: E Data differs at [1, 1]: E a> 7.8790336 E b> 7.895912 E Data differs at [2, 1]: E a> 7.1727624 E b> 7.138387 E Data differs at [3, 1]: E a> 7.1864924 E b> 7.7791295 E Data differs at [4, 1]: E a> 8.488396 E b> 8.30729 E Data differs at [5, 1]: E a> 8.091365 E b> 8.075245 E Data differs at [6, 1]: E a> 7.611582 E b> 7.285578 E Data differs at [7, 1]: E a> 7.6412067 E b> 7.6529727 E Data differs at [8, 1]: E a> 8.311155 E b> 8.707414 E Data differs at [9, 1]: E a> 7.9412 E b> 9.288069 E Data differs at [10, 1]: E a> 7.9953065 E b> 8.11928 E ... E 60298 different pixels found (99.76% different). E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [54, 1]: E a> 1 E b> 5 E Data differs at [91, 1]: E a> 1 E b> 5 E Data differs at [113, 1]: E a> 5 E b> 1 E Data differs at [134, 1]: E a> 1 E b> 5 E Data differs at [147, 1]: E a> 1 E b> 5 E Data differs at [157, 1]: E a> 1 E b> 5 E Data differs at [161, 1]: E a> 5 E b> 1 E Data differs at [192, 1]: E a> 1 E b> 5 E Data differs at [215, 1]: E a> 5 E b> 1 E Data differs at [236, 1]: E a> 1 E b> 5 E ... E 8851 different pixels found (14.64% different). E E Extension HDU 3 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.43525583 E b> 0.434676 E Data differs at [2, 1]: E a> 0.41344056 E b> 0.40850815 E Data differs at [3, 1]: E a> 0.42419714 E b> 0.45107073 E Data differs at [4, 1]: E a> 0.43999326 E b> 0.45117962 E Data differs at [5, 1]: E a> 0.41931367 E b> 0.4294056 E Data differs at [6, 1]: E a> 0.42927435 E b> 0.39980277 E Data differs at [7, 1]: E a> 0.42770875 E b> 0.40669695 E Data differs at [8, 1]: E a> 0.43864995 E b> 0.45259553 E Data differs at [9, 1]: E a> 0.41494167 E b> 0.533785 E Data differs at [10, 1]: E a> 0.46476573 E b> 0.43006828 E ... E 60302 different pixels found (99.77% different). E E Extension HDU 4 (WAVELENGTH, 1): E E Data contains differences: E Data differs at [1, 4]: E a> nan E b> 0.992814 E Data differs at [2, 4]: E a> nan E b> 0.9934496 E Data differs at [3, 4]: E a> nan E b> 0.9940852 E Data differs at [4, 4]: E a> nan E b> 0.9947208 E Data differs at [5, 4]: E a> nan E b> 0.9953564 E Data differs at [6, 4]: E a> nan E b> 0.99599195 E Data differs at [7, 4]: E a> nan E b> 0.99662757 E Data differs at [8, 4]: E a> nan E b> 0.99726313 E Data differs at [9, 4]: E a> nan E b> 0.9978987 E Data differs at [10, 4]: E a> nan E b> 0.99853426 E ... E 45612 different pixels found (75.46% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.12939285 E b> 0.13782738 E Data differs at [2, 1]: E a> 0.12229334 E b> 0.10630864 E Data differs at [3, 1]: E a> 0.1294325 E b> 0.12811598 E Data differs at [4, 1]: E a> 0.13293746 E b> 0.14354621 E Data differs at [5, 1]: E a> 0.11721945 E b> 0.12080387 E Data differs at [6, 1]: E a> 0.12068921 E b> 0.101559065 E Data differs at [7, 1]: E a> 0.12608178 E b> 0.105102286 E Data differs at [8, 1]: E a> 0.13768041 E b> 0.14537552 E Data differs at [9, 1]: E a> 0.12573494 E b> 0.17241931 E Data differs at [10, 1]: E a> 0.15676537 E b> 0.13223708 E ... E 60305 different pixels found (99.77% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.06005479 E b> 0.05111583 E Data differs at [2, 1]: E a> 0.048639752 E b> 0.060570274 E Data differs at [3, 1]: E a> 0.0505107 E b> 0.075348824 E Data differs at [4, 1]: E a> 0.060656607 E b> 0.060016852 E Data differs at [5, 1]: E a> 0.058604494 E b> 0.06358531 E Data differs at [6, 1]: E a> 0.06358726 E b> 0.058283202 E Data differs at [7, 1]: E a> 0.056852985 E b> 0.060300127 E Data differs at [8, 1]: E a> 0.05473337 E b> 0.0594672 E Data differs at [9, 1]: E a> 0.046441663 E b> 0.11250708 E Data differs at [10, 1]: E a> 0.059241798 E b> 0.052721653 E ... E 60301 different pixels found (99.77% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63688f0f70>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:48: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 ___________________ test_nirspec_lamp_ifu_spec2[assign_wcs] ____________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'assign_wcs' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_assign_wcs.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_assign_wcs.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308687580>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError ---------------------------- Captured stderr setup ----------------------------- 2021-08-21 06:07:25,008 - stpipe - INFO - PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0006.asdf 2021-08-21 06:07:25,040 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:07:25,040 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:07:25,042 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:07:25,042 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:07:25,043 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:07:25,044 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:07:25,046 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:07:25,047 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:07:25,048 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:07:25,048 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:07:25,049 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:07:25,050 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:07:25,050 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:07:25,051 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:07:25,052 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:07:25,053 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:07:25,053 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:07:25,054 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:07:25,055 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:07:25,056 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:07:25,057 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:07:25,058 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:07:25,058 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:07:25,058 - stpipe - INFO - OS: Linux 2021-08-21 06:07:25,199 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits',). 2021-08-21 06:07:25,211 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:07:25,361 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00005_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'specwcs', 'wavelengthrange'] 2021-08-21 06:07:25,369 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:07:25,370 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:07:25,371 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:07:25,372 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:07:25,373 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:07:25,373 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'. 2021-08-21 06:07:25,373 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:07:25,374 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:07:25,374 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'. 2021-08-21 06:07:25,374 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:07:25,375 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. 2021-08-21 06:07:25,376 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. 2021-08-21 06:07:25,377 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. 2021-08-21 06:07:25,379 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:07:25,379 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:07:25,382 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:07:25,383 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 2021-08-21 06:07:25,383 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits ... 2021-08-21 06:07:25,714 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_rate.fits>,). 2021-08-21 06:07:25,715 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:07:25,893 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:07:25,893 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3161331710000003 deg 2021-08-21 06:07:25,894 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200584613 deg 2021-08-21 06:07:25,894 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:07:25,903 - stpipe.Spec2Pipeline.assign_wcs - INFO - Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2021-08-21 06:07:25,959 - stpipe.Spec2Pipeline.assign_wcs - INFO - Applied Barycentric velocity correction : 0.9999953090767777 2021-08-21 06:07:29,303 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2021-08-21 06:07:30,399 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:07:32,309 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw00626030001_02103_00005_nrs1_assign_wcs.fits 2021-08-21 06:07:32,309 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:07:32,704 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). 2021-08-21 06:07:32,705 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:07:32,705 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:07:32,707 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:07:33,076 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). 2021-08-21 06:07:33,077 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:33,078 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:07:33,079 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:07:33,455 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>,). 2021-08-21 06:07:33,456 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:33,478 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2021-08-21 06:07:33,479 - stpipe.JwstStep - INFO - JwstStep instance created. 2021-08-21 06:07:33,628 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:07:33,629 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.3161331710000003 deg 2021-08-21 06:07:33,629 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.005914304200584613 deg 2021-08-21 06:07:33,630 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2021-08-21 06:07:33,639 - stpipe.Spec2Pipeline.msa_flagging - INFO - Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2021-08-21 06:07:33,639 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:07:33,733 - stpipe.Spec2Pipeline.msa_flagging - INFO - Applied Barycentric velocity correction : 0.9999953090767777 2021-08-21 06:07:33,764 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2021-08-21 06:07:33,810 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2021-08-21 06:07:33,839 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2021-08-21 06:07:33,920 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2021-08-21 06:07:33,949 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:07:49,342 - stpipe.Spec2Pipeline.msa_flagging - INFO - Saved model in jw00626030001_02103_00005_nrs1_msa_flagging.fits 2021-08-21 06:07:49,343 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:07:49,536 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:49,537 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:07:49,537 - stpipe.Spec2Pipeline.extract_2d - INFO - Step skipped. 2021-08-21 06:07:49,538 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:07:49,717 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:49,718 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:49,718 - stpipe.Spec2Pipeline.srctype - INFO - Step skipped. 2021-08-21 06:07:49,719 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:07:49,893 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:49,896 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:07:49,897 - stpipe.Spec2Pipeline.master_background - INFO - Step skipped. 2021-08-21 06:07:49,897 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:07:50,074 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:50,075 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:50,075 - stpipe.Spec2Pipeline.wavecorr - INFO - Step skipped. 2021-08-21 06:07:50,076 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:07:50,256 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:50,257 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:13:17,427 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw00626030001_02103_00005_nrs1_flat_field.fits 2021-08-21 06:13:17,427 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:13:17,756 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2021-08-21 06:13:17,757 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:13:17,757 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped. 2021-08-21 06:13:17,758 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:13:18,073 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2021-08-21 06:13:18,074 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:13:18,074 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2021-08-21 06:13:18,075 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:13:18,387 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2021-08-21 06:13:18,388 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:13:18,388 - stpipe.Spec2Pipeline.photom - INFO - Step skipped. 2021-08-21 06:13:18,389 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:13:18,733 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). 2021-08-21 06:13:18,736 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'multi', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': True} 2021-08-21 06:13:18,736 - stpipe.Spec2Pipeline.cube_build - INFO - Step skipped. 2021-08-21 06:13:18,737 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build done 2021-08-21 06:13:18,965 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). 2021-08-21 06:13:18,967 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:13:18,967 - stpipe.Spec2Pipeline.extract_1d - INFO - Step skipped. 2021-08-21 06:13:18,968 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:13:18,968 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 2021-08-21 06:13:18,968 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:13:20,864 - stpipe.Spec2Pipeline - INFO - Saved model in jw00626030001_02103_00005_nrs1_cal.fits 2021-08-21 06:13:20,864 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS INFO stpipe:pipeline.py:179 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0006.asdf INFO stpipe:pipeline.py:179 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0006.asdf INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw00626030001_02103_00005_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'specwcs', 'wavelengthrange'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:913 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:913 Applied Barycentric velocity correction : 0.9999953090767777 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:25 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:321 JwstStep instance created. DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1005 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1005 Applied Barycentric velocity correction : 0.9999953090767777 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_msa_flagging.fits INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} INFO stpipe.Spec2Pipeline.extract_2d:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.srctype:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.wavecorr:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is IFUImageModel of exposure type NRS_AUTOWAVE DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FFLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type SFLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 95 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 95 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 92 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 92 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 96 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 96 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 171 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 171 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 64 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 64 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 117 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 117 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 115 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 115 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 54 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 54 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 125 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 125 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 41 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 41 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 90 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 90 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 43 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 43 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 98 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 98 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 49 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 49 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 47 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 47 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 100 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 100 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 55 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 55 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 111 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 111 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 40 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 40 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 85 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 85 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 50 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 50 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.photom:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.cube_build:step.py:367 Step cube_build running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.cube_build:step.py:371 Step cube_build parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'multi', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': True} INFO stpipe.Spec2Pipeline.cube_build:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.cube_build:step.py:470 Step cube_build done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} INFO stpipe.Spec2Pipeline.extract_1d:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 __________________ test_nirspec_lamp_ifu_spec2[msa_flagging] ___________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'msa_flagging' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_msa_flagging.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_msa_flagging.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63687df370>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 ___________________ test_nirspec_lamp_ifu_spec2[flat_field] ____________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [145, 85]: E a> 1 E b> 0 E Data differs at [146, 85]: E a> 1 E b> 0 E Data differs at [147, 85]: E a> 1 E b> 0 E Data differs at [148, 85]: E a> 1 E b> 0 E Data differs at [149, 85]: E a> 3 E b> 2 E Data differs at [150, 85]: E a> 1 E b> 0 E Data differs at [151, 85]: E a> 1 E b> 0 E Data differs at [152, 85]: E a> 1 E b> 0 E Data differs at [153, 85]: E a> 1 E b> 0 E Data differs at [154, 85]: E a> 1 E b> 0 E ... E 6425 different pixels found (0.15% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63687df310>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 _______________________ test_nirspec_lamp_ifu_spec2[cal] _______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [145, 85]: E a> 1 E b> 0 E Data differs at [146, 85]: E a> 1 E b> 0 E Data differs at [147, 85]: E a> 1 E b> 0 E Data differs at [148, 85]: E a> 1 E b> 0 E Data differs at [149, 85]: E a> 3 E b> 2 E Data differs at [150, 85]: E a> 1 E b> 0 E Data differs at [151, 85]: E a> 1 E b> 0 E Data differs at [152, 85]: E a> 1 E b> 0 E Data differs at [153, 85]: E a> 1 E b> 0 E Data differs at [154, 85]: E a> 1 E b> 0 E ... E 6425 different pixels found (0.15% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368f49040>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 __________________________ test_nirspec_mos_mbkg[cal] __________________________ suffix = 'cal' run_spec2_mbkg = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...th_bkgslits_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 'masterbg1d', 'masterbg2d'] ) def test_nirspec_mos_mbkg(suffix, run_spec2_mbkg, fitsdiff_default_kwargs): """Run spec2 with master background""" rtdata = run_spec2_mbkg > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/nrs_mos_with_bkgslits_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E Keyword SLTSIZE2 has different values: E a> 25 E b> 19 E Keyword SLTSTRT2 has different values: E a> 1183 E ? ^ E b> 1184 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 10 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 11 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1423 E ? ^ E b> 1424 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 12 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 13 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 14 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 15 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 16 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 17 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 18 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 19 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 20 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 21 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1843 E ? ^ E b> 1844 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 22 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 23 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 24 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 25 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 29 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 30 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 31 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 1706 E ? ^ E b> 1707 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 32 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 33 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 34 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 35 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 36 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 37 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 38 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 39 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 40 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 41 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1793 E ? ^ E b> 1794 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 42 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 43 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 44 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 45 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 46 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 47 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 48 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 49 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 50 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 51 (SCI, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1303 E ? ^ E b> 1304 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 52 (DQ, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 53 (ERR, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 54 (WAVELENGTH, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 55 (BARSHADOW, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 56 (VAR_POISSON, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 57 (VAR_RNOISE, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 58 (VAR_FLAT, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 59 (PATHLOSS_PS, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 60 (PATHLOSS_UN, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 61 (SCI, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1887 E ? ^ E b> 1888 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 62 (DQ, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 63 (ERR, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 64 (WAVELENGTH, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 65 (BARSHADOW, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 66 (VAR_POISSON, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 67 (VAR_RNOISE, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 68 (VAR_FLAT, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 69 (PATHLOSS_PS, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 70 (PATHLOSS_UN, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 71 (SCI, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1922 E ? ^ E b> 1923 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 72 (DQ, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 73 (ERR, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 74 (WAVELENGTH, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 75 (BARSHADOW, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 76 (VAR_POISSON, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 77 (VAR_RNOISE, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 78 (VAR_FLAT, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 79 (PATHLOSS_PS, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 80 (PATHLOSS_UN, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308463fd0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:100: AssertionError ---------------------------- Captured stderr setup ----------------------------- 2021-08-21 06:15:58,099 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:15:58,100 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:15:58,101 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:15:58,102 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:15:58,102 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:15:58,103 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:15:58,106 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:15:58,107 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:15:58,107 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:15:58,108 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:15:58,109 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:15:58,109 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:15:58,110 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:15:58,111 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:15:58,112 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:15:58,112 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:15:58,113 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:15:58,114 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:15:58,114 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:15:58,115 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:15:58,117 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:15:58,117 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:15:58,118 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:15:58,118 - stpipe - INFO - OS: Linux 2021-08-21 06:15:58,831 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits',). 2021-08-21 06:15:58,843 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:15:58,993 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'nrs_mos_with_bkgslits_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:15:59,008 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 06:15:59,009 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 06:15:59,009 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 06:15:59,010 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:15:59,011 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:15:59,013 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:15:59,013 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:15:59,013 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:15:59,014 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:15:59,015 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:15:59,015 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 06:15:59,016 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 06:15:59,017 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:15:59,017 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:15:59,017 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 06:15:59,019 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:15:59,020 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:15:59,022 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:15:59,024 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:15:59,025 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 06:15:59,026 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 06:15:59,026 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:15:59,027 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:15:59,027 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 06:15:59,028 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:15:59,028 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 06:15:59,030 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:15:59,031 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:15:59,031 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:15:59,032 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits 2021-08-21 06:15:59,032 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits ... 2021-08-21 06:15:59,312 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:15:59,313 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:15:59,467 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 2021-08-21 06:15:59,471 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 5 is background only; assigned source_id = 36 2021-08-21 06:15:59,472 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 6 is background only; assigned source_id = 37 2021-08-21 06:15:59,475 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 10 is background only; assigned source_id = 38 2021-08-21 06:15:59,478 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 16 is background only; assigned source_id = 39 2021-08-21 06:15:59,509 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.0 deg 2021-08-21 06:15:59,509 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.0 deg 2021-08-21 06:15:59,510 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.3763368051194907 deg 2021-08-21 06:15:59,510 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:15:59,794 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] 2021-08-21 06:15:59,795 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 8 open slitlets 2021-08-21 06:15:59,822 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.0 deg 2021-08-21 06:15:59,822 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.0 deg 2021-08-21 06:15:59,822 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.3763368051194907 deg 2021-08-21 06:15:59,823 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:15:59,832 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:15:59,949 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 1 2021-08-21 06:15:59,958 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:15:59,958 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 7 open slits in quadrant 3 2021-08-21 06:16:00,014 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2021-08-21 06:16:00,014 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:16:00,138 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} 2021-08-21 06:16:00,486 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:16:00,492 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:16:00,611 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). 2021-08-21 06:16:00,612 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:16:00,612 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:16:00,613 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:16:00,719 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). 2021-08-21 06:16:00,720 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:16:00,720 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:16:00,721 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:16:00,826 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:00,827 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:16:00,843 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2021-08-21 06:16:00,844 - stpipe.JwstStep - INFO - JwstStep instance created. 2021-08-21 06:16:00,961 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.0 deg 2021-08-21 06:16:00,961 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.0 deg 2021-08-21 06:16:00,961 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.3763368051194907 deg 2021-08-21 06:16:00,962 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2021-08-21 06:16:00,973 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:16:01,091 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2021-08-21 06:16:01,131 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2021-08-21 06:16:01,155 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2021-08-21 06:16:01,227 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2021-08-21 06:16:01,251 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:16:12,952 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:16:13,170 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:13,171 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:16:13,189 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2021-08-21 06:16:13,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 6 2021-08-21 06:16:13,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1773 2048 2021-08-21 06:16:13,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1182 1207 2021-08-21 06:16:13,533 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:13,542 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 2021-08-21 06:16:13,543 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 2021-08-21 06:16:13,757 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 3 2021-08-21 06:16:13,758 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1206 2048 2021-08-21 06:16:13,758 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1422 1445 2021-08-21 06:16:14,043 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:14,052 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 2021-08-21 06:16:14,053 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 2021-08-21 06:16:14,258 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 4 2021-08-21 06:16:14,258 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1267 2048 2021-08-21 06:16:14,258 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1842 1865 2021-08-21 06:16:14,397 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:14,406 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 2021-08-21 06:16:14,407 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 2021-08-21 06:16:14,610 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 5 2021-08-21 06:16:14,610 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 769 2048 2021-08-21 06:16:14,611 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1705 1733 2021-08-21 06:16:14,776 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:14,785 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 2021-08-21 06:16:14,785 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 2021-08-21 06:16:15,160 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 8 2021-08-21 06:16:15,160 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1407 2048 2021-08-21 06:16:15,160 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1792 1815 2021-08-21 06:16:15,290 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:15,299 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 2021-08-21 06:16:15,299 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 2021-08-21 06:16:15,500 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2021-08-21 06:16:15,500 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1266 2048 2021-08-21 06:16:15,500 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1302 1325 2021-08-21 06:16:15,633 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:15,641 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 2021-08-21 06:16:15,641 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 2021-08-21 06:16:16,025 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 14 2021-08-21 06:16:16,025 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1070 2048 2021-08-21 06:16:16,025 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1886 1911 2021-08-21 06:16:16,164 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:16,172 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 2021-08-21 06:16:16,172 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 2021-08-21 06:16:16,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 16 2021-08-21 06:16:16,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1036 2048 2021-08-21 06:16:16,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1921 1946 2021-08-21 06:16:16,509 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:16,517 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 2021-08-21 06:16:16,517 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 2021-08-21 06:16:16,782 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:16:16,978 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:16,979 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:16:16,986 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2021-08-21 06:16:16,986 - stpipe.Spec2Pipeline.srctype - INFO - source_id=37, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,987 - stpipe.Spec2Pipeline.srctype - INFO - source_id=35, stellarity=0.9200, type=POINT 2021-08-21 06:16:16,987 - stpipe.Spec2Pipeline.srctype - INFO - source_id=29, stellarity=0.1500, type=EXTENDED 2021-08-21 06:16:16,987 - stpipe.Spec2Pipeline.srctype - INFO - source_id=36, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,988 - stpipe.Spec2Pipeline.srctype - INFO - source_id=15, stellarity=0.8200, type=POINT 2021-08-21 06:16:16,988 - stpipe.Spec2Pipeline.srctype - INFO - source_id=38, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,989 - stpipe.Spec2Pipeline.srctype - INFO - source_id=6, stellarity=0.4800, type=EXTENDED 2021-08-21 06:16:16,989 - stpipe.Spec2Pipeline.srctype - INFO - source_id=39, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,990 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:16:17,149 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:17,152 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:16:17,159 - stpipe.Spec2Pipeline.master_background - INFO - Calculating master background 2021-08-21 06:16:17,322 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:17,323 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:16:25,976 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 6 2021-08-21 06:16:27,165 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 3 2021-08-21 06:16:30,661 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 4 2021-08-21 06:16:33,883 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 5 2021-08-21 06:16:39,098 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:16:41,742 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:16:45,005 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 14 2021-08-21 06:16:48,934 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 16 2021-08-21 06:16:52,918 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:16:53,325 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:53,326 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:16:53,363 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:16:53,400 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:16:54,729 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:16:54,744 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:16:54,759 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:16:54,773 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:16:54,790 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:16:54,808 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:16:54,822 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 6 2021-08-21 06:16:54,837 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 7 2021-08-21 06:16:54,854 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:16:55,114 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:55,115 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:16:55,145 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:16:56,552 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 6 2021-08-21 06:16:56,605 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 3 2021-08-21 06:16:56,718 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 4 2021-08-21 06:16:56,828 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 5 2021-08-21 06:16:57,006 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:16:57,099 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:16:57,209 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 14 2021-08-21 06:16:57,343 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 16 2021-08-21 06:16:57,482 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:16:57,805 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:57,807 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:16:57,860 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:16:57,861 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:16:59,299 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 6 2021-08-21 06:16:59,299 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,304 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 3 2021-08-21 06:16:59,304 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,310 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 4 2021-08-21 06:16:59,310 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,315 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 5 2021-08-21 06:16:59,315 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,321 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:16:59,321 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,326 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:16:59,326 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,331 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 14 2021-08-21 06:16:59,332 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,337 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 16 2021-08-21 06:16:59,337 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,345 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:16:59,345 - stpipe.Spec2Pipeline.master_background - INFO - Creating MOS master background from background slitlets 2021-08-21 06:16:59,360 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_6 2021-08-21 06:16:59,360 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_5 2021-08-21 06:16:59,361 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_10 2021-08-21 06:16:59,361 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_16 2021-08-21 06:16:59,494 - stpipe.Spec2Pipeline.master_background - INFO - Applying resampling and 1D extraction to background slits 2021-08-21 06:16:59,510 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2021-08-21 06:16:59,829 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:59,830 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:16:59,860 - stpipe.ResampleSpecStep - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: pixfrac=1.0 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: kernel='square' 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: fillval='INDEF' 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: weight_type='ivm' 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: pscale_ratio=1.0 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits 2021-08-21 06:17:00,401 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:00,427 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,429 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:00,454 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,457 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:00,481 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,485 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:00,510 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,521 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 2021-08-21 06:17:00,718 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:00,769 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,780 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:00,832 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,844 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:00,893 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,905 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:00,955 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,980 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 2021-08-21 06:17:01,129 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:01,163 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,169 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:01,203 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,211 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:01,243 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,251 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:01,285 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,304 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 2021-08-21 06:17:01,474 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:01,514 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,522 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:01,562 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,572 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:01,613 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,622 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:01,665 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,687 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 2021-08-21 06:17:01,697 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2021-08-21 06:17:01,714 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2021-08-21 06:17:02,015 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:02,017 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:17:02,041 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:17:02,059 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:17:02,097 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:17:02,097 - stpipe.Extract1dStep - INFO - Working on slit 6 2021-08-21 06:17:02,097 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,101 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,102 - stpipe.Extract1dStep - INFO - xstart=0, xstop=274, ystart=3.5, ystop=10.5 2021-08-21 06:17:02,176 - stpipe.Extract1dStep - INFO - Working on slit 5 2021-08-21 06:17:02,176 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,184 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,185 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1278, ystart=3.5, ystop=10.5 2021-08-21 06:17:02,407 - stpipe.Extract1dStep - INFO - Working on slit 10 2021-08-21 06:17:02,407 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,413 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,414 - stpipe.Extract1dStep - INFO - xstart=0, xstop=781, ystart=3.5, ystop=10.5 2021-08-21 06:17:02,561 - stpipe.Extract1dStep - INFO - Working on slit 16 2021-08-21 06:17:02,561 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,568 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,568 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1011, ystart=3.0, ystop=10.0 2021-08-21 06:17:02,749 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2021-08-21 06:17:02,749 - stpipe.Spec2Pipeline.master_background - INFO - Combining 1D background spectra into master background 2021-08-21 06:17:02,749 - stpipe.Spec2Pipeline.master_background - INFO - Using exposure time as the weight. 2021-08-21 06:17:02,826 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 1 2021-08-21 06:17:02,828 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 2 2021-08-21 06:17:02,835 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 3 2021-08-21 06:17:02,840 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 4 2021-08-21 06:17:02,845 - stpipe.Spec2Pipeline.master_background - WARNING - 2 output pixel numbers were NaN 2021-08-21 06:17:02,846 - stpipe.Spec2Pipeline.master_background - WARNING - 1 elements of output had no corresponding input data; 2021-08-21 06:17:02,846 - stpipe.Spec2Pipeline.master_background - WARNING - these elements will be omitted. 2021-08-21 06:17:02,889 - stpipe.Spec2Pipeline.master_background - INFO - Interpolating 1D master background to all MOS 2D slitlets 2021-08-21 06:17:04,300 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 6 2021-08-21 06:17:04,301 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 3 2021-08-21 06:17:04,302 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 4 2021-08-21 06:17:04,302 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 5 2021-08-21 06:17:04,303 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 8 2021-08-21 06:17:04,303 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 10 2021-08-21 06:17:04,304 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 14 2021-08-21 06:17:04,304 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 16 2021-08-21 06:17:04,608 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:04,609 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:17:04,616 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:17:04,616 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:17:04,616 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:17:05,740 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 6 2021-08-21 06:17:05,740 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,745 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 3 2021-08-21 06:17:05,746 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,751 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 4 2021-08-21 06:17:05,751 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,756 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 5 2021-08-21 06:17:05,756 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:17:05,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,767 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:17:05,767 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,772 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 14 2021-08-21 06:17:05,772 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,778 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 16 2021-08-21 06:17:05,778 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,784 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:17:06,142 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:06,144 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:17:07,244 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 6 2021-08-21 06:17:07,247 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 3 2021-08-21 06:17:07,251 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 4 2021-08-21 06:17:07,255 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 5 2021-08-21 06:17:07,258 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:17:07,262 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:17:07,265 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 14 2021-08-21 06:17:07,269 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 16 2021-08-21 06:17:07,274 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:17:07,624 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:07,625 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:17:07,632 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:17:08,723 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:17:08,728 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:17:08,732 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:17:08,736 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:17:08,740 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:17:08,745 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:17:08,749 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 6 2021-08-21 06:17:08,754 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 7 2021-08-21 06:17:08,759 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:17:09,181 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:09,183 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:17:09,190 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_rate.fits> 2021-08-21 06:17:10,283 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 6 2021-08-21 06:17:10,287 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 3 2021-08-21 06:17:10,290 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 4 2021-08-21 06:17:10,294 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 5 2021-08-21 06:17:10,297 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:17:10,300 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:17:10,303 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 14 2021-08-21 06:17:10,307 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 16 2021-08-21 06:17:10,312 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:17:10,317 - stpipe.Spec2Pipeline.master_background - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:17:11,973 - stpipe.Spec2Pipeline.master_background - INFO - Saved model in nrs_mos_with_bkgslits_masterbg1d.fits 2021-08-21 06:17:13,832 - stpipe.Spec2Pipeline.master_background - INFO - Saved model in nrs_mos_with_bkgslits_masterbg2d.fits 2021-08-21 06:17:13,833 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:17:14,223 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:14,224 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:17:14,256 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf 2021-08-21 06:17:15,350 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 6 2021-08-21 06:17:15,350 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 3 2021-08-21 06:17:15,428 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:17:15,431 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 4 2021-08-21 06:17:15,431 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 5 2021-08-21 06:17:15,431 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 8 2021-08-21 06:17:15,498 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:17:15,501 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 10 2021-08-21 06:17:15,501 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 14 2021-08-21 06:17:15,501 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 16 2021-08-21 06:17:15,503 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:17:15,891 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:15,893 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:17:24,092 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 6 2021-08-21 06:17:25,164 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 3 2021-08-21 06:17:28,296 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 4 2021-08-21 06:17:31,583 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 5 2021-08-21 06:17:36,353 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 8 2021-08-21 06:17:38,735 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2021-08-21 06:17:41,587 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 14 2021-08-21 06:17:45,200 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 16 2021-08-21 06:17:49,144 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:17:49,703 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:49,706 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:17:49,736 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:17:49,775 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:17:50,900 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2021-08-21 06:17:50,915 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2021-08-21 06:17:50,930 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2021-08-21 06:17:50,944 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2021-08-21 06:17:50,960 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2021-08-21 06:17:50,976 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 5 2021-08-21 06:17:50,990 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 6 2021-08-21 06:17:51,005 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 7 2021-08-21 06:17:51,022 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:17:51,402 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:51,403 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:17:51,432 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:17:52,571 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 6 2021-08-21 06:17:52,625 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 3 2021-08-21 06:17:52,634 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2021-08-21 06:17:52,638 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 4 2021-08-21 06:17:52,747 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 5 2021-08-21 06:17:52,930 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 8 2021-08-21 06:17:52,940 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 8 (source not uniform) 2021-08-21 06:17:52,944 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2021-08-21 06:17:53,053 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 14 2021-08-21 06:17:53,189 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 16 2021-08-21 06:17:53,330 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:17:53,776 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:53,778 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:17:53,834 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:17:53,834 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2021-08-21 06:17:54,991 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 6 2021-08-21 06:17:54,992 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:54,997 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 3 2021-08-21 06:17:54,997 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:17:55,002 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 4 2021-08-21 06:17:55,002 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,007 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 5 2021-08-21 06:17:55,008 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,013 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 8 2021-08-21 06:17:55,013 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:17:55,018 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2021-08-21 06:17:55,019 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,024 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 14 2021-08-21 06:17:55,024 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,029 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 16 2021-08-21 06:17:55,030 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,037 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:17:55,548 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from nrs_mos_with_bkgslits_cal.fits>,). 2021-08-21 06:17:55,551 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:17:55,593 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:17:55,595 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:17:55,595 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits 2021-08-21 06:17:56,564 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:56,591 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,594 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:56,619 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,623 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:56,649 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,652 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:56,677 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,689 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 2021-08-21 06:17:56,850 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:56,887 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:56,894 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:56,929 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:56,937 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:56,973 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:56,981 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:57,015 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:57,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.162050147 -27.807721575 53.162359602 -27.807721575 53.162359602 -27.807411164 53.162050147 -27.807411164 2021-08-21 06:17:57,194 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:57,231 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,237 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:57,271 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,278 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:57,314 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,322 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:57,356 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,375 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.172455538 -27.816239537 53.172768443 -27.816239537 53.172768443 -27.815925884 53.172455538 -27.815925884 2021-08-21 06:17:57,586 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:57,641 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,652 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:57,706 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,719 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:57,773 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,785 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:57,837 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,863 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 2021-08-21 06:17:58,010 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:58,044 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,050 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:58,082 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,089 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:58,122 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,129 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:58,161 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,179 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.174810158 -27.812383895 53.175123060 -27.812383895 53.175123060 -27.812070952 53.174810158 -27.812070952 2021-08-21 06:17:58,337 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:58,373 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,380 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:58,414 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,421 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:58,457 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,465 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:58,498 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,517 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 2021-08-21 06:17:58,687 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:58,727 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,735 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:58,774 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:58,824 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,833 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:58,874 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,895 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.168606661 -27.821093649 53.168919392 -27.821093649 53.168919392 -27.820779180 53.168606661 -27.820779180 2021-08-21 06:17:59,068 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:59,109 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,117 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:59,155 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,165 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:59,206 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,215 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:59,254 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,275 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 2021-08-21 06:18:00,159 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in nrs_mos_with_bkgslits_s2d.fits 2021-08-21 06:18:00,160 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:18:00,506 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from nrs_mos_with_bkgslits_s2d.fits>,). 2021-08-21 06:18:00,507 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:18:00,577 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:18:00,602 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:18:00,638 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:18:00,639 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 6 2021-08-21 06:18:00,639 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:00,643 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:00,643 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=274, ystart=3.5, ystop=10.5 2021-08-21 06:18:00,715 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 3 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 410.92, which is outside the bounding box, 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=841, ystart=3.5, ystop=10.5 2021-08-21 06:18:00,877 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:18:02,179 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 4 2021-08-21 06:18:02,179 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:02,185 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:02,185 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=780, ystart=3.5, ystop=10.5 2021-08-21 06:18:02,335 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 5 2021-08-21 06:18:02,335 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:02,343 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:02,344 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1278, ystart=3.5, ystop=10.5 2021-08-21 06:18:02,567 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 8 2021-08-21 06:18:02,575 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 87.34, which is outside the bounding box, 2021-08-21 06:18:02,575 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:18:02,575 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:02,576 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=640, ystart=3.5, ystop=10.5 2021-08-21 06:18:02,698 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:18:03,695 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2021-08-21 06:18:03,695 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:03,702 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:03,702 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=781, ystart=3.5, ystop=10.5 2021-08-21 06:18:03,851 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 14 2021-08-21 06:18:03,851 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:03,858 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:03,858 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=977, ystart=3.5, ystop=10.5 2021-08-21 06:18:04,034 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 16 2021-08-21 06:18:04,034 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:04,041 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:04,041 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1011, ystart=3.0, ystop=10.0 2021-08-21 06:18:04,476 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in nrs_mos_with_bkgslits_x1d.fits 2021-08-21 06:18:04,476 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:18:04,477 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits 2021-08-21 06:18:04,477 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:18:05,969 - stpipe.Spec2Pipeline - INFO - Saved model in nrs_mos_with_bkgslits_cal.fits 2021-08-21 06:18:05,969 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'nrs_mos_with_bkgslits_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 1 [(3, 1, 3, 108, 121, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 108, 122, 35, 'N', 'OPEN', 0.47603804, 0.29847124, 1, 'Y'), (3, 1, 3, 108, 123, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 37, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 38, 29, 'N', 'OPEN', 0.48960054, 0.63718337, 1, 'Y'), (4, 1, 3, 91, 39, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 64, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 65, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 66, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 169, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 170, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 171, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 47, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 48, 15, 'N', 'OPEN', 0.3641984, 0.17683797, 1, 'Y'), (8, 1, 3, 36, 49, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 145, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 146, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 147, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 28, 6, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 29, 6, 'N', 'OPEN', 0.4311356, 0.19721484, 1, 'Y'), (14, 1, 3, 168, 30, 31, 'N', 'OPEN', 0.69895035, 0.5455596, 1, 'N'), (16, 1, 3, 182, 21, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 22, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 23, 0, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 1 [(3, 1, 3, 108, 121, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 108, 122, 35, 'N', 'OPEN', 0.47603804, 0.29847124, 1, 'Y'), (3, 1, 3, 108, 123, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 37, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 38, 29, 'N', 'OPEN', 0.48960054, 0.63718337, 1, 'Y'), (4, 1, 3, 91, 39, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 64, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 65, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 66, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 169, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 170, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 171, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 47, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 48, 15, 'N', 'OPEN', 0.3641984, 0.17683797, 1, 'Y'), (8, 1, 3, 36, 49, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 145, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 146, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 147, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 28, 6, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 29, 6, 'N', 'OPEN', 0.4311356, 0.19721484, 1, 'Y'), (14, 1, 3, 168, 30, 31, 'N', 'OPEN', 0.69895035, 0.5455596, 1, 'N'), (16, 1, 3, 182, 21, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 22, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 23, 0, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 5 is background only; assigned source_id = 36 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 5 is background only; assigned source_id = 36 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 6 is background only; assigned source_id = 37 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 6 is background only; assigned source_id = 37 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 10 is background only; assigned source_id = 38 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 10 is background only; assigned source_id = 38 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 16 is background only; assigned source_id = 39 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 16 is background only; assigned source_id = 39 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 8 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 8 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 7 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 7 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:25 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:321 JwstStep instance created. DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 6 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 6 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1773 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1773 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1182 1207 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1182 1207 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1206 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1206 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1422 1445 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1422 1445 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1267 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1267 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1842 1865 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1842 1865 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 5 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 5 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 769 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 769 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1705 1733 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1705 1733 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1407 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1407 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1792 1815 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1792 1815 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1266 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1266 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1302 1325 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1302 1325 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 14 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 14 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1070 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1070 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1886 1911 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1886 1911 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 16 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 16 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1036 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1036 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1921 1946 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1921 1946 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=37, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=37, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=35, stellarity=0.9200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=35, stellarity=0.9200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=29, stellarity=0.1500, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=29, stellarity=0.1500, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=36, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=36, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=15, stellarity=0.8200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=15, stellarity=0.8200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=38, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=38, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=6, stellarity=0.4800, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=6, stellarity=0.4800, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=39, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=39, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:130 Calculating master background INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done DEBUG stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:244 Calculating 1D master background INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:97 Creating MOS master background from background slitlets DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:step.py:774 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.Spec2Pipeline.master_background:step.py:795 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:321 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:367 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.ResampleSpecStep:step.py:371 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.ResampleSpecStep:step.py:470 Step ResampleSpecStep done DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:step.py:774 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.Spec2Pipeline.master_background:step.py:795 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:321 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:367 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Extract1dStep:step.py:371 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:step.py:470 Step Extract1dStep done INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.Spec2Pipeline.master_background:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.Spec2Pipeline.master_background:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.Spec2Pipeline.master_background:combine1d.py:529 Using exposure time as the weight. INFO stpipe.Spec2Pipeline.master_background:combine1d.py:529 Using exposure time as the weight. DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:243 these elements will be omitted. WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:243 these elements will be omitted. DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_rate.fits> DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:step.py:928 Saved model in nrs_mos_with_bkgslits_masterbg1d.fits INFO stpipe.Spec2Pipeline.master_background:step.py:928 Saved model in nrs_mos_with_bkgslits_masterbg2d.fits INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 6 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 6 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 3 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 5 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 5 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 8 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 14 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 14 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 16 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 16 INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 6 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 3 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6710 out of 19366 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6710 out of 19366 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 4 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 5 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5133 out of 14743 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5133 out of 14743 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 14 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 16 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 6 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 7 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 6 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 5 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 8 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 8 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 14 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 16 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 6 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 6 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 4 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 4 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 5 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 5 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 14 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 14 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 16 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 16 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from nrs_mos_with_bkgslits_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 37 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 37 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 35 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 35 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 29 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 29 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 36 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 36 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 15 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 15 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 38 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 38 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 6 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 6 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 39 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 39 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.162050147 -27.807721575 53.162359602 -27.807721575 53.162359602 -27.807411164 53.162050147 -27.807411164 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.162050147 -27.807721575 53.162359602 -27.807721575 53.162359602 -27.807411164 53.162050147 -27.807411164 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.172455538 -27.816239537 53.172768443 -27.816239537 53.172768443 -27.815925884 53.172455538 -27.815925884 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.172455538 -27.816239537 53.172768443 -27.816239537 53.172768443 -27.815925884 53.172455538 -27.815925884 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.174810158 -27.812383895 53.175123060 -27.812383895 53.175123060 -27.812070952 53.174810158 -27.812070952 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.174810158 -27.812383895 53.175123060 -27.812383895 53.175123060 -27.812070952 53.174810158 -27.812070952 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168606661 -27.821093649 53.168919392 -27.821093649 53.168919392 -27.820779180 53.168606661 -27.820779180 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168606661 -27.821093649 53.168919392 -27.821093649 53.168919392 -27.820779180 53.168606661 -27.820779180 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in nrs_mos_with_bkgslits_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from nrs_mos_with_bkgslits_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 6 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 6 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 3 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 3 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 410.92, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 410.92, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 420 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 420 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=841, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=841, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=780, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=780, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 87.34, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 87.34, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 320 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 320 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=640, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=640, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 14 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 14 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=977, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=977, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 16 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 16 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in nrs_mos_with_bkgslits_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in nrs_mos_with_bkgslits_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 ______________________ test_nirspec_mos_mbkg[masterbg2d] _______________________ suffix = 'masterbg2d' run_spec2_mbkg = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...sterbg2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 'masterbg1d', 'masterbg2d'] ) def test_nirspec_mos_mbkg(suffix, run_spec2_mbkg, fitsdiff_default_kwargs): """Run spec2 with master background""" rtdata = run_spec2_mbkg > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_masterbg2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/nrs_mos_with_bkgslits_masterbg2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E Keyword SLTSIZE2 has different values: E a> 25 E b> 19 E Keyword SLTSTRT2 has different values: E a> 1183 E ? ^ E b> 1184 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 10 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 11 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1423 E ? ^ E b> 1424 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 12 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 13 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 14 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 15 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 16 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 17 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 18 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 19 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 20 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 21 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1843 E ? ^ E b> 1844 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 22 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 23 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 24 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 25 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 29 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 30 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 31 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 1706 E ? ^ E b> 1707 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 32 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 33 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 34 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 35 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 36 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 37 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 38 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 39 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 40 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 41 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1793 E ? ^ E b> 1794 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 42 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 43 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 44 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 45 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 46 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 47 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 48 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 49 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 50 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 51 (SCI, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1303 E ? ^ E b> 1304 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 52 (DQ, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 53 (ERR, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 54 (WAVELENGTH, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 55 (BARSHADOW, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 56 (VAR_POISSON, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 57 (VAR_RNOISE, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 58 (VAR_FLAT, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 59 (PATHLOSS_PS, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 60 (PATHLOSS_UN, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 61 (SCI, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1887 E ? ^ E b> 1888 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 62 (DQ, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 63 (ERR, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 64 (WAVELENGTH, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 65 (BARSHADOW, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 66 (VAR_POISSON, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 67 (VAR_RNOISE, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 68 (VAR_FLAT, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 69 (PATHLOSS_PS, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 70 (PATHLOSS_UN, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 71 (SCI, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1922 E ? ^ E b> 1923 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 72 (DQ, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 73 (ERR, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 74 (WAVELENGTH, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 75 (BARSHADOW, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 76 (VAR_POISSON, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 77 (VAR_RNOISE, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 78 (VAR_FLAT, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 79 (PATHLOSS_PS, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 80 (PATHLOSS_UN, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308804640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:100: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 _______________________ test_nirspec_mos_mbkg_user[cal] ________________________ suffix = 'cal' run_spec2_mbkg_user = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...l.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 's2d', 'x1d'] ) def test_nirspec_mos_mbkg_user(suffix, run_spec2_mbkg_user, fitsdiff_default_kwargs): """Run spec2 with master background and user-supplied mbkg""" rtdata = run_spec2_mbkg_user > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg_user') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/jw00626030001_02103_00001_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E Keyword SLTSIZE2 has different values: E a> 27 E b> 20 E Keyword SLTSTRT2 has different values: E a> 1916 E ? ^ E b> 1917 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 10 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 11 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E Keyword SLTSIZE2 has different values: E a> 25 E b> 20 E Keyword SLTSTRT2 has different values: E a> 709 E b> 710 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 12 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 13 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 14 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 15 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 16 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 17 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 18 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 19 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 20 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 21 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 22 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 23 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 24 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 25 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 29 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 30 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 31 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 33 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E Keyword SLTSIZE2 has different values: E a> 18 E b> 17 E Keyword SLTSTRT2 has different values: E a> 1355 E ? ^ E b> 1356 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 43 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 44 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 45 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 46 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 48 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 49 (SCI, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 50 (DQ, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 51 (ERR, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 52 (WAVELENGTH, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 53 (BARSHADOW, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 54 (VAR_POISSON, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 55 (VAR_RNOISE, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 56 (VAR_FLAT, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 57 (PATHLOSS_PS, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 58 (PATHLOSS_UN, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f635687df40>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:110: AssertionError ---------------------------- Captured stderr setup ----------------------------- 2021-08-21 06:18:10,484 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:18:10,485 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:18:10,486 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:18:10,487 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:18:10,488 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:18:10,488 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:18:10,491 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:18:10,492 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:18:10,492 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:18:10,493 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:18:10,494 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:18:10,494 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:18:10,496 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:18:10,497 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:18:10,498 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:18:10,498 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:18:10,499 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:18:10,500 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:18:10,500 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:18:10,501 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:18:10,502 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:18:10,503 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:18:10,503 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:18:10,503 - stpipe - INFO - OS: Linux 2021-08-21 06:18:10,622 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits',). 2021-08-21 06:18:10,634 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:18:10,792 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:18:10,804 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 06:18:10,806 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 06:18:10,807 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 06:18:10,809 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:18:10,810 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:18:10,811 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:18:10,811 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:18:10,812 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:18:10,813 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:18:10,813 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:18:10,813 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 06:18:10,815 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 06:18:10,815 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:18:10,816 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:18:10,816 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 06:18:10,818 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:18:10,819 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 06:18:10,819 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:18:10,820 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:18:10,820 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:18:10,820 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:18:10,821 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:18:10,823 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:18:10,824 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 06:18:10,826 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 06:18:10,827 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:18:10,827 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:18:10,828 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 06:18:10,828 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:18:10,829 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 06:18:10,829 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:18:10,831 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:18:10,831 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:18:10,832 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 2021-08-21 06:18:10,832 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits ... 2021-08-21 06:18:11,117 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:11,118 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:18:11,265 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 2021-08-21 06:18:11,278 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 8 is background only; assigned source_id = 2316 2021-08-21 06:18:11,331 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:18:11,331 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.316133170999999 deg 2021-08-21 06:18:11,332 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200586192 deg 2021-08-21 06:18:11,332 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:18:11,585 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] 2021-08-21 06:18:11,585 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 6 open slitlets 2021-08-21 06:18:11,613 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:18:11,613 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.316133170999999 deg 2021-08-21 06:18:11,613 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200586192 deg 2021-08-21 06:18:11,614 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:18:11,623 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:18:11,738 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 1 2021-08-21 06:18:11,746 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 2 2021-08-21 06:18:11,754 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 3 open slits in quadrant 3 2021-08-21 06:18:11,779 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 4 2021-08-21 06:18:11,787 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:18:11,905 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} 2021-08-21 06:18:12,268 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:18:12,274 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:18:12,393 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). 2021-08-21 06:18:12,394 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:18:12,394 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:18:12,395 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:18:12,510 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). 2021-08-21 06:18:12,511 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:18:12,511 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:18:12,512 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:18:12,627 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:12,628 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:18:12,645 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2021-08-21 06:18:12,646 - stpipe.JwstStep - INFO - JwstStep instance created. 2021-08-21 06:18:12,763 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:18:12,763 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.316133170999999 deg 2021-08-21 06:18:12,764 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.005914304200586192 deg 2021-08-21 06:18:12,764 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2021-08-21 06:18:12,773 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:18:12,892 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2021-08-21 06:18:12,933 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2021-08-21 06:18:12,958 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2021-08-21 06:18:13,035 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2021-08-21 06:18:13,063 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:18:24,252 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:18:24,495 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:24,496 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:18:24,513 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2021-08-21 06:18:24,698 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 20 2021-08-21 06:18:24,698 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1821 2048 2021-08-21 06:18:24,699 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1915 1942 2021-08-21 06:18:24,822 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:24,830 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 2021-08-21 06:18:24,831 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 2021-08-21 06:18:25,002 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 21 2021-08-21 06:18:25,002 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1777 2048 2021-08-21 06:18:25,003 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 708 733 2021-08-21 06:18:25,125 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:25,133 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 2021-08-21 06:18:25,133 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 2021-08-21 06:18:25,456 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 1 2021-08-21 06:18:25,456 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 909 2048 2021-08-21 06:18:25,456 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1845 1872 2021-08-21 06:18:25,598 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:25,607 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 2021-08-21 06:18:25,607 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 2021-08-21 06:18:25,784 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 2 2021-08-21 06:18:25,784 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 710 2048 2021-08-21 06:18:25,784 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1614 1643 2021-08-21 06:18:25,936 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:25,944 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 2021-08-21 06:18:25,945 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 2021-08-21 06:18:26,120 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 8 2021-08-21 06:18:26,121 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 717 2048 2021-08-21 06:18:26,121 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1354 1372 2021-08-21 06:18:26,252 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:26,260 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 2021-08-21 06:18:26,261 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 2021-08-21 06:18:26,602 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2021-08-21 06:18:26,602 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 605 2038 2021-08-21 06:18:26,602 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 707 735 2021-08-21 06:18:26,750 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:26,758 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 2021-08-21 06:18:26,759 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 2021-08-21 06:18:26,960 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:18:27,132 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:27,133 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:18:27,140 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2021-08-21 06:18:27,140 - stpipe.Spec2Pipeline.srctype - INFO - source_id=443, stellarity=1.0000, type=POINT 2021-08-21 06:18:27,141 - stpipe.Spec2Pipeline.srctype - INFO - source_id=482, stellarity=0.2000, type=EXTENDED 2021-08-21 06:18:27,141 - stpipe.Spec2Pipeline.srctype - INFO - source_id=227, stellarity=0.2000, type=EXTENDED 2021-08-21 06:18:27,142 - stpipe.Spec2Pipeline.srctype - INFO - source_id=279, stellarity=1.0000, type=POINT 2021-08-21 06:18:27,142 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2316, stellarity=0.0000, type=EXTENDED 2021-08-21 06:18:27,142 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2315, stellarity=0.8000, type=POINT 2021-08-21 06:18:27,144 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:18:27,293 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:27,296 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:18:27,303 - stpipe.Spec2Pipeline.master_background - INFO - Calculating master background from user-supplied background jw00626030001_02103_00001_nrs1_masterbg1d.fits 2021-08-21 06:18:27,508 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:27,509 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:18:35,675 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 20 2021-08-21 06:18:36,581 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 21 2021-08-21 06:18:37,650 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 1 2021-08-21 06:18:41,833 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 2 2021-08-21 06:18:46,547 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:18:48,376 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:18:53,911 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:18:54,265 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:54,266 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:18:54,299 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:18:54,336 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:18:55,397 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:18:55,411 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - WARNING - Source is outside slit. 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:18:55,442 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:18:55,457 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:18:55,474 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:18:55,707 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:55,708 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:18:55,734 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:18:56,577 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 20 2021-08-21 06:18:56,626 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 21 2021-08-21 06:18:56,678 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 1 2021-08-21 06:18:56,837 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 2 2021-08-21 06:18:57,029 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:18:57,130 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:18:57,333 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:18:57,599 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:57,600 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:18:57,648 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:18:57,648 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:18:58,527 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 20 2021-08-21 06:18:58,527 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,532 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 21 2021-08-21 06:18:58,533 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,537 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 1 2021-08-21 06:18:58,537 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,544 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 2 2021-08-21 06:18:58,544 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,550 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:18:58,551 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,556 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:18:58,557 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,564 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:18:58,565 - stpipe.Spec2Pipeline.master_background - INFO - Interpolating 1D master background to all MOS 2D slitlets 2021-08-21 06:18:59,685 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 20 2021-08-21 06:18:59,686 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 21 2021-08-21 06:18:59,686 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 1 2021-08-21 06:18:59,687 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 2 2021-08-21 06:18:59,688 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 8 2021-08-21 06:18:59,688 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 10 2021-08-21 06:18:59,946 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:59,947 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:18:59,954 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:18:59,954 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:18:59,954 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:19:00,761 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:19:00,818 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 20 2021-08-21 06:19:00,819 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,823 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 21 2021-08-21 06:19:00,824 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,828 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 1 2021-08-21 06:19:00,828 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,834 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 2 2021-08-21 06:19:00,834 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,840 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:19:00,840 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,845 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:19:00,846 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,852 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:19:01,156 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:01,158 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:19:02,002 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 20 2021-08-21 06:19:02,006 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 21 2021-08-21 06:19:02,009 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 1 2021-08-21 06:19:02,013 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 2 2021-08-21 06:19:02,017 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:19:02,021 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:19:02,026 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:19:02,324 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:02,325 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:19:02,332 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:19:03,166 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:19:03,171 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:19:03,175 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:19:03,175 - stpipe.Spec2Pipeline.master_background.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:19:03,175 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:19:03,179 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:19:03,184 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:19:03,189 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:19:03,522 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:03,524 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:19:03,531 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits> 2021-08-21 06:19:04,369 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 20 2021-08-21 06:19:04,372 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 21 2021-08-21 06:19:04,375 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 1 2021-08-21 06:19:04,379 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 2 2021-08-21 06:19:04,382 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:19:04,386 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:19:04,391 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:19:04,396 - stpipe.Spec2Pipeline.master_background - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:19:05,642 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:19:05,962 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:05,963 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:19:05,993 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf 2021-08-21 06:19:06,846 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 20 2021-08-21 06:19:06,906 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:19:06,908 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 21 2021-08-21 06:19:06,908 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 1 2021-08-21 06:19:06,908 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 2 2021-08-21 06:19:07,014 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:19:07,019 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 8 2021-08-21 06:19:07,019 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 10 2021-08-21 06:19:07,123 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:19:07,130 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:19:07,458 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:07,460 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:19:15,563 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 20 2021-08-21 06:19:16,471 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 21 2021-08-21 06:19:17,544 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 1 2021-08-21 06:19:21,791 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 2 2021-08-21 06:19:26,737 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 8 2021-08-21 06:19:28,574 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2021-08-21 06:19:34,397 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:19:34,866 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:34,869 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:19:34,898 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:19:34,936 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:19:35,772 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2021-08-21 06:19:35,786 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - WARNING - Source is outside slit. 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2021-08-21 06:19:35,818 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2021-08-21 06:19:35,832 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 5 2021-08-21 06:19:35,850 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:19:36,166 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:36,167 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:19:36,194 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:19:37,058 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 20 2021-08-21 06:19:37,067 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 20 (source not uniform) 2021-08-21 06:19:37,070 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 21 2021-08-21 06:19:37,123 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 1 2021-08-21 06:19:37,281 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 2 2021-08-21 06:19:37,291 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 2 (source not uniform) 2021-08-21 06:19:37,294 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 8 2021-08-21 06:19:37,389 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2021-08-21 06:19:37,400 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 10 (source not uniform) 2021-08-21 06:19:37,406 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:19:37,774 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:37,776 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:19:37,823 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:19:37,823 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:19:38,668 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2021-08-21 06:19:38,722 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 20 2021-08-21 06:19:38,723 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:19:38,727 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 21 2021-08-21 06:19:38,728 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:38,732 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 1 2021-08-21 06:19:38,733 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:38,740 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 2 2021-08-21 06:19:38,740 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:19:38,746 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 8 2021-08-21 06:19:38,747 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:38,752 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2021-08-21 06:19:38,752 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:19:38,760 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:19:39,196 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_cal.fits>,). 2021-08-21 06:19:39,198 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:19:39,234 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:19:39,234 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits 2021-08-21 06:19:39,996 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:40,021 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,023 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:40,048 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,051 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:40,075 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,077 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:40,103 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,114 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.156599247 -28.977471802 53.157027253 -28.977471802 53.157027253 -28.977283305 53.156599247 -28.977283305 2021-08-21 06:19:40,229 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:40,256 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,258 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:40,285 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,288 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:40,314 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,317 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:40,344 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,356 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.120210201 -28.993373375 53.120625420 -28.993373375 53.120625420 -28.993190967 53.120210201 -28.993190967 2021-08-21 06:19:40,547 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:40,595 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,605 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:40,653 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,664 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:40,710 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,721 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:40,769 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,793 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.167900825 -29.001917421 53.168329572 -29.001917421 53.168329572 -29.001732020 53.167900825 -29.001732020 2021-08-21 06:19:41,004 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:41,057 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,069 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:41,121 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,133 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:41,184 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,197 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:41,249 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,275 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.163666676 -29.009833799 53.164123837 -29.009833799 53.164123837 -29.009636814 53.163666676 -29.009636814 2021-08-21 06:19:41,411 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:41,449 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,453 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:41,490 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,495 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:41,531 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,536 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:41,574 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,589 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.155498868 -29.012771347 53.155619938 -29.012771347 53.155619938 -29.012719152 53.155498868 -29.012719152 2021-08-21 06:19:41,808 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:41,862 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:41,873 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:41,927 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:41,940 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:41,994 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:42,008 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:42,062 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:42,092 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.137343841 -29.023333510 53.137760806 -29.023333510 53.137760806 -29.023153834 53.137343841 -29.023153834 2021-08-21 06:19:42,437 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw00626030001_02103_00001_nrs1_s2d.fits 2021-08-21 06:19:42,438 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:19:42,784 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_s2d.fits>,). 2021-08-21 06:19:42,785 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:19:42,815 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:19:42,836 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:19:42,873 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:19:42,873 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 20 2021-08-21 06:19:42,879 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 59.41, which is outside the bounding box, 2021-08-21 06:19:42,879 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:19:42,880 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:42,880 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=226, ystart=3.5, ystop=10.5 2021-08-21 06:19:42,940 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:19:43,292 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 21 2021-08-21 06:19:43,292 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:19:43,296 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:43,296 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=270, ystart=3.5, ystop=10.5 2021-08-21 06:19:43,367 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 1 2021-08-21 06:19:43,367 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:19:43,375 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:43,375 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1138, ystart=3.5, ystop=10.5 2021-08-21 06:19:43,570 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 2 2021-08-21 06:19:43,583 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at -54.30, which is outside the bounding box, 2021-08-21 06:19:43,583 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:19:43,584 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:43,584 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1337, ystart=4.0, ystop=11.0 2021-08-21 06:19:43,806 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:19:45,874 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 8 2021-08-21 06:19:45,874 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:19:45,879 - stpipe.Spec2Pipeline.extract_1d - WARNING - extract_width was truncated from 8 to 5 2021-08-21 06:19:45,880 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:45,880 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1330, ystart=-1.5, ystop=5.5 2021-08-21 06:19:45,882 - stpipe.Spec2Pipeline.extract_1d - WARNING - Source extraction limit extends below -0.5 2021-08-21 06:19:45,883 - stpipe.Spec2Pipeline.extract_1d - WARNING - Source extraction limit extends above 4.5 2021-08-21 06:19:46,100 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2021-08-21 06:19:46,112 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 79.51, which is outside the bounding box, 2021-08-21 06:19:46,112 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:19:46,113 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:46,113 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1432, ystart=3.5, ystop=10.5 2021-08-21 06:19:46,346 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw00626030001_02103_00001_nrs1_x1d.fits 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:19:49,806 - stpipe.Spec2Pipeline - INFO - Saved model in jw00626030001_02103_00001_nrs1_cal.fits 2021-08-21 06:19:49,806 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET 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(1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_3pointnod_1_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_3pointnod_1_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 5 [(1, 5, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 5, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 5, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 5, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 5, 3, 218, 136, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 5, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 22, 443, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (20, 5, 1, 251, 23, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 24, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 22, 482, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (21, 5, 2, 251, 23, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 24, 482, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 5 [(1, 5, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 5, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 5, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 5, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 5, 3, 218, 136, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 5, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 22, 443, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (20, 5, 1, 251, 23, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 24, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 22, 482, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (21, 5, 2, 251, 23, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 24, 482, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 8 is background only; assigned source_id = 2316 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 8 is background only; assigned source_id = 2316 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 6 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 6 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 3 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 3 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:25 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:321 JwstStep instance created. DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 20 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 20 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1821 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1821 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1915 1942 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1915 1942 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 21 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 21 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1777 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1777 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 733 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 733 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 909 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 909 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1845 1872 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1845 1872 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 710 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 710 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1614 1643 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1614 1643 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 717 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 717 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1354 1372 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1354 1372 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 605 2038 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 605 2038 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 707 735 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 707 735 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=482, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=482, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=227, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=227, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=279, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=279, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2316, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2316, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2315, stellarity=0.8000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2315, stellarity=0.8000, type=POINT INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:112 Calculating master background from user-supplied background jw00626030001_02103_00001_nrs1_masterbg1d.fits DEBUG stpipe.Spec2Pipeline.master_background:util.py:193 Opening jw00626030001_02103_00001_nrs1_masterbg1d.fits as <class 'jwst.datamodels.multicombinedspec.MultiCombinedSpecModel'> DEBUG stpipe.Spec2Pipeline.master_background:util.py:193 Opening jw00626030001_02103_00001_nrs1_masterbg1d.fits as <class 'jwst.datamodels.multicombinedspec.MultiCombinedSpecModel'> DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2732 out of 6129 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2732 out of 6129 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18700 out of 38802 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18700 out of 38802 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18463 out of 40124 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18463 out of 40124 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done DEBUG stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:241 User background provided <MultiCombinedSpecModel from jw00626030001_02103_00001_nrs1_masterbg1d.fits> INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 20 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 20 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 21 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 21 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 1 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 1 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 2 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 2 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits> DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 20 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 20 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 21 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 21 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 2 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 10 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 20 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2734 out of 6129 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2734 out of 6129 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 21 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18711 out of 38802 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18711 out of 38802 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18470 out of 40124 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18470 out of 40124 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 20 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 20 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 20 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 21 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 2 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 2 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 10 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 10 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 21 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 21 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 1 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2316 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2316 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.156599247 -28.977471802 53.157027253 -28.977471802 53.157027253 -28.977283305 53.156599247 -28.977283305 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.156599247 -28.977471802 53.157027253 -28.977471802 53.157027253 -28.977283305 53.156599247 -28.977283305 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.120210201 -28.993373375 53.120625420 -28.993373375 53.120625420 -28.993190967 53.120210201 -28.993190967 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.120210201 -28.993373375 53.120625420 -28.993373375 53.120625420 -28.993190967 53.120210201 -28.993190967 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.167900825 -29.001917421 53.168329572 -29.001917421 53.168329572 -29.001732020 53.167900825 -29.001732020 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.167900825 -29.001917421 53.168329572 -29.001917421 53.168329572 -29.001732020 53.167900825 -29.001732020 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.163666676 -29.009833799 53.164123837 -29.009833799 53.164123837 -29.009636814 53.163666676 -29.009636814 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.163666676 -29.009833799 53.164123837 -29.009833799 53.164123837 -29.009636814 53.163666676 -29.009636814 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.155498868 -29.012771347 53.155619938 -29.012771347 53.155619938 -29.012719152 53.155498868 -29.012719152 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.155498868 -29.012771347 53.155619938 -29.012771347 53.155619938 -29.012719152 53.155498868 -29.012719152 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.137343841 -29.023333510 53.137760806 -29.023333510 53.137760806 -29.023153834 53.137343841 -29.023153834 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.137343841 -29.023333510 53.137760806 -29.023333510 53.137760806 -29.023153834 53.137343841 -29.023153834 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in jw00626030001_02103_00001_nrs1_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 20 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 20 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 59.41, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 59.41, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=226, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=226, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 21 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 21 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=270, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=270, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1138, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1138, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 2 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at -54.30, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at -54.30, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 668 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 668 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.5], [11.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.5], [11.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1337, ystart=4.0, ystop=11.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1337, ystart=4.0, ystop=11.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:768 extract_width was truncated from 8 to 5 WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:768 extract_width was truncated from 8 to 5 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[-2.0], [6.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[-2.0], [6.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1330, ystart=-1.5, ystop=5.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1330, ystart=-1.5, ystop=5.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:188 Source extraction limit extends below -0.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:188 Source extraction limit extends below -0.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:193 Source extraction limit extends above 4.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:193 Source extraction limit extends above 4.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 79.51, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 79.51, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 716 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 716 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1432, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1432, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in jw00626030001_02103_00001_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 _______________________ test_nirspec_mos_mbkg_user[s2d] ________________________ suffix = 's2d' run_spec2_mbkg_user = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 's2d', 'x1d'] ) def test_nirspec_mos_mbkg_user(suffix, run_spec2_mbkg_user, fitsdiff_default_kwargs): """Run spec2 with master background and user-supplied mbkg""" rtdata = run_spec2_mbkg_user > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg_user') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/jw00626030001_02103_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 20 E Keyword SLTSTRT2 has different values: E a> 1916 E ? ^ E b> 1917 E ? ^ E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 25 E b> 20 E Keyword SLTSTRT2 has different values: E a> 709 E b> 710 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 18 E b> 17 E Keyword SLTSTRT2 has different values: E a> 1355 E ? ^ E b> 1356 E ? ^ E E Extension HDU 36 (SCI, 6): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636624e7f0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:110: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 __________________________ test_nirspec_ifu_mbkg_user __________________________ rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ound.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} def test_nirspec_ifu_mbkg_user(rtdata, fitsdiff_default_kwargs): """Test NIRSpec IFU data with a user-supplied background file.""" # Get user-supplied background user_background = "prism_bkg_x1d.fits" rtdata.get_data(f"nirspec/ifu/{user_background}") # Get input data rtdata.get_data("nirspec/ifu/prism_sci_bkg_cal.fits") collect_pipeline_cfgs("config") args = ["config/master_background.cfg", rtdata.input, "--user_background", user_background] Step.from_cmdline(args) output = "prism_sci_bkg_master_background.fits" rtdata.output = output # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_user/{output}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_master_background.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/truth/prism_sci_bkg_master_background.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [641, 88]: E a> 513 E b> 512 E Data differs at [642, 88]: E a> 513 E b> 512 E Data differs at [643, 88]: E a> 517 E b> 516 E Data differs at [644, 88]: E a> 513 E b> 512 E Data differs at [645, 88]: E a> 513 E b> 512 E Data differs at [646, 88]: E a> 513 E b> 512 E Data differs at [647, 88]: E a> 513 E b> 512 E Data differs at [648, 88]: E a> 513 E b> 512 E Data differs at [649, 88]: E a> 513 E b> 512 E Data differs at [650, 88]: E a> 517 E b> 516 E ... E 24214 different pixels found (0.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630818e1c0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:161: AssertionError ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ----------------------------- Captured stderr call ----------------------------- 2021-08-21 06:20:07,486 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:20:07,487 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:20:07,487 - stpipe - INFO - OS: Linux 2021-08-21 06:20:07,785 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits',). 2021-08-21 06:20:07,786 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0', 'user_background': 'prism_bkg_x1d.fits', 'save_background': False, 'force_subtract': False} 2021-08-21 06:22:11,803 - stpipe.master_background - INFO - Applying point source pathloss updates to IFU background 2021-08-21 06:22:11,804 - stpipe.master_background - WARNING - Pathloss_point array not found in input 2021-08-21 06:22:11,804 - stpipe.master_background - WARNING - Skipping pathloss background updates 2021-08-21 06:22:24,115 - stpipe.master_background - INFO - Saved model in prism_sci_bkg_master_background.fits 2021-08-21 06:22:24,116 - stpipe.master_background - INFO - Step master_background done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0', 'user_background': 'prism_bkg_x1d.fits', 'save_background': False, 'force_subtract': False} DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening prism_bkg_x1d.fits as <class 'jwst.datamodels.spec.SpecModel'> DEBUG stpipe.master_background:util.py:193 Opening prism_bkg_x1d.fits as <class 'jwst.datamodels.spec.SpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in prism_sci_bkg_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 _____________________ test_nirspec_ifu_mbkg_nod[on-source] _____________________ rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..., 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_master_background.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") collect_pipeline_cfgs("config") args = ["config/master_background.cfg", rtdata.input, "--save_background=True"] Step.from_cmdline(args) rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_master_background.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/truth/ifu_prism_source_on_NRS1_master_background.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [641, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [642, 88]: E a> 2561 E ? ^ E b> 2560 E ? ^ E Data differs at [643, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [644, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [645, 88]: E a> 513 E b> 512 E Data differs at [646, 88]: E a> 513 E b> 512 E Data differs at [647, 88]: E a> 513 E b> 512 E Data differs at [648, 88]: E a> 513 E b> 512 E Data differs at [649, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [650, 88]: E a> 513 E b> 512 E ... E 24214 different pixels found (0.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308aaba60>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:188: AssertionError ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ----------------------------- Captured stderr call ----------------------------- 2021-08-21 06:22:39,577 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:22:39,577 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:22:39,578 - stpipe - INFO - OS: Linux 2021-08-21 06:22:40,109 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). 2021-08-21 06:22:40,111 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0', 'user_background': None, 'save_background': True, 'force_subtract': False} 2021-08-21 06:22:50,405 - stpipe.master_background - INFO - Using exposure time as the weight. 2021-08-21 06:22:50,405 - stpipe.master_background - WARNING - There is no WCS in the input. 2021-08-21 06:22:50,416 - stpipe.master_background - INFO - Accumulating data from input spectrum 1 2021-08-21 06:24:56,058 - stpipe.master_background - INFO - Applying point source pathloss updates to IFU background 2021-08-21 06:24:56,059 - stpipe.master_background - WARNING - Pathloss_point array not found in input 2021-08-21 06:24:56,059 - stpipe.master_background - WARNING - Skipping pathloss background updates 2021-08-21 06:25:02,868 - stpipe.master_background - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2021-08-21 06:25:08,027 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2021-08-21 06:25:13,620 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2021-08-21 06:25:13,620 - stpipe.master_background - INFO - Step master_background done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:master_background_step.py:121 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 ____________________ test_nirspec_ifu_mbkg_nod[on-source2d] ____________________ rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") collect_pipeline_cfgs("config") args = ["config/master_background.cfg", rtdata.input, "--save_background=True"] Step.from_cmdline(args) rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/truth/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [641, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [642, 88]: E a> 2561 E ? ^ E b> 2560 E ? ^ E Data differs at [643, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [644, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [645, 88]: E a> 513 E b> 512 E Data differs at [646, 88]: E a> 513 E b> 512 E Data differs at [647, 88]: E a> 513 E b> 512 E Data differs at [648, 88]: E a> 513 E b> 512 E Data differs at [649, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [650, 88]: E a> 513 E b> 512 E ... E 24214 different pixels found (0.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630842fb50>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:188: AssertionError ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ----------------------------- Captured stderr call ----------------------------- 2021-08-21 06:28:27,718 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:28:27,718 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:28:27,718 - stpipe - INFO - OS: Linux 2021-08-21 06:28:28,437 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). 2021-08-21 06:28:28,439 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1', 'user_background': None, 'save_background': True, 'force_subtract': False} 2021-08-21 06:28:40,477 - stpipe.master_background - INFO - Using exposure time as the weight. 2021-08-21 06:28:40,477 - stpipe.master_background - WARNING - There is no WCS in the input. 2021-08-21 06:28:40,489 - stpipe.master_background - INFO - Accumulating data from input spectrum 1 2021-08-21 06:30:50,775 - stpipe.master_background - INFO - Applying point source pathloss updates to IFU background 2021-08-21 06:30:50,776 - stpipe.master_background - WARNING - Pathloss_point array not found in input 2021-08-21 06:30:50,776 - stpipe.master_background - WARNING - Skipping pathloss background updates 2021-08-21 06:30:57,673 - stpipe.master_background - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2021-08-21 06:31:03,020 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2021-08-21 06:31:08,783 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2021-08-21 06:31:08,784 - stpipe.master_background - INFO - Step master_background done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:master_background_step.py:121 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 ______________________ test_nirspec_mos_spec2[extract_2d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...: 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307c34580>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 _______________________ test_nirspec_mos_spec2[wavecorr] _______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...e': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368b12220>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 ______________________ test_nirspec_mos_spec2[flat_field] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...: 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 31 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 33 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 34 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 35 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367f67df0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 _______________________ test_nirspec_mos_spec2[srctype] ________________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...te': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63690f5d30>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 _______________________ test_nirspec_mos_spec2[pathloss] _______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...e': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 16 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 17 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 23 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 24 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 25 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 26 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 27 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 28 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 29 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 30 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 31 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 32 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 33 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 34 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 35 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 36 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 37 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 38 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 39 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 40 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 41 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 42 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 43 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6356622400>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 ______________________ test_nirspec_mos_spec2[barshadow] _______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'barshadow' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 9 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 23 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 24 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 25 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 26 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 27 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 28 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 29 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 30 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 31 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 33 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 43 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 44 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 45 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 46 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 48 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367f67400>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 _________________________ test_nirspec_mos_spec2[cal] __________________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 9 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 23 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 24 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 25 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 26 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 27 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 28 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 29 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 30 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 31 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 33 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 43 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 44 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 45 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 46 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 48 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63686e7250>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 _________________________ test_nirspec_mos_spec2[s2d] __________________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6355b75be0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 ______________________ test_nirspec_mos_spec3[s00000-s2d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00000' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7874 different pixels found (28.11% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7873 different pixels found (28.10% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7856 different pixels found (28.04% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7855 different pixels found (28.04% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6356246e20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 ______________________ test_nirspec_mos_spec3[s00227-s2d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 21598 different pixels found (64.15% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 21575 different pixels found (64.08% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 20726 different pixels found (61.56% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 18715 different pixels found (55.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f62fc0789a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 ______________________ test_nirspec_mos_spec3[s00227-x1d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...7748 additional difference(s) found. E ... E 7758 different table data element(s) found (33.28% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6355d1e520>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 ______________________ test_nirspec_mos_spec3[s00279-crf] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits'} suffix = 'crf', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [611, 21]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 1 different pixels found (0.00% different). E E Extension HDU 10 (DQ, 2): E E Data contains differences: E Data differs at [732, 15]: E a> 34078721 E ? ^^ E b> 34078737 E ? ^^ E 1 different pixels found (0.00% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f632a5e7430>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 ______________________ test_nirspec_mos_spec3[s00279-s2d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Data contains differences: E Data differs at [611, 14]: E a> 186.4526 E b> 186.76375 E Data differs at [612, 14]: E a> 185.1949 E b> 186.1065 E Data differs at [611, 15]: E a> 119.78825 E b> 125.61985 E Data differs at [612, 15]: E a> 93.1466 E b> 112.163315 E 4 different pixels found (0.01% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 19448 different pixels found (55.82% different). E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [611, 14]: E a> 103.00755 E b> 102.83631 E Data differs at [612, 14]: E a> 103.868866 E b> 103.3612 E Data differs at [611, 15]: E a> 13.6098385 E b> 12.980075 E Data differs at [612, 15]: E a> 9.937675 E b> 8.2588825 E 4 different pixels found (0.01% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 18903 different pixels found (54.26% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 17736 different pixels found (50.91% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 15469 different pixels found (44.40% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367c99a90>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 ______________________ test_nirspec_mos_spec3[s00279-x1d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX data differs in row 610: E a> 416848245.4419136 E b> 422990983.78419876 E Column FLUX data differs in row 611: E a> 387624299.76463324 E b> 407552621.6030122 E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E ...3998 additional difference(s) found. E ... E 4008 different table data element(s) found (16.62% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6366e609a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 ______________________ test_nirspec_mos_spec3[s00443-s2d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 21960 different pixels found (65.02% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 20360 different pixels found (60.28% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 20545 different pixels found (60.83% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 10784 different pixels found (31.93% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6356b09640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 ______________________ test_nirspec_mos_spec3[s00443-x1d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...3881 additional difference(s) found. E ... E 3891 different table data element(s) found (16.64% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f632a24ca90>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 ______________________ test_nirspec_mos_spec3[s00482-s2d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 15793 different pixels found (46.91% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 15782 different pixels found (46.87% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 13038 different pixels found (38.72% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 11093 different pixels found (32.95% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6357183b20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 ______________________ test_nirspec_mos_spec3[s00482-x1d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...7734 additional difference(s) found. E ... E 7744 different table data element(s) found (33.22% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63679a4490>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 ______________________ test_nirspec_mos_spec3[s02315-s2d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 23833 different pixels found (63.88% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 21852 different pixels found (58.57% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 22553 different pixels found (60.45% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 10915 different pixels found (29.25% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368c80ac0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 ______________________ test_nirspec_mos_spec3[s02315-x1d] ______________________ run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...4286 additional difference(s) found. E ... E 4296 different table data element(s) found (16.63% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368baef70>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 ________________________ test_verify_detector1[dq_init] ________________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...verify_nrs1_dq_init.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'dq_init' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_dq_init.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_dq_init.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f62fc0780d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ---------------------------- Captured stderr setup ----------------------------- 2021-08-21 06:36:59,100 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf 2021-08-21 06:36:59,114 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created. 2021-08-21 06:36:59,114 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2021-08-21 06:36:59,115 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created. 2021-08-21 06:36:59,116 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created. 2021-08-21 06:36:59,116 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created. 2021-08-21 06:36:59,117 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created. 2021-08-21 06:36:59,118 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created. 2021-08-21 06:36:59,119 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created. 2021-08-21 06:36:59,119 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2021-08-21 06:36:59,120 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created. 2021-08-21 06:36:59,121 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created. 2021-08-21 06:36:59,121 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2021-08-21 06:36:59,122 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created. 2021-08-21 06:36:59,123 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created. 2021-08-21 06:36:59,124 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created. 2021-08-21 06:36:59,124 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2021-08-21 06:36:59,125 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2021-08-21 06:36:59,125 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:36:59,125 - stpipe - INFO - OS: Linux 2021-08-21 06:36:59,248 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits',). 2021-08-21 06:36:59,256 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}}} 2021-08-21 06:36:59,406 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'nrs_verify_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] 2021-08-21 06:36:59,415 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. 2021-08-21 06:36:59,417 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. 2021-08-21 06:36:59,419 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. 2021-08-21 06:36:59,420 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. 2021-08-21 06:36:59,422 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'. 2021-08-21 06:36:59,422 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. 2021-08-21 06:36:59,424 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. 2021-08-21 06:36:59,426 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2021-08-21 06:36:59,426 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2021-08-21 06:36:59,426 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. 2021-08-21 06:36:59,427 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. 2021-08-21 06:36:59,429 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'. 2021-08-21 06:36:59,429 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'. 2021-08-21 06:36:59,429 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ... 2021-08-21 06:36:59,712 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). 2021-08-21 06:36:59,713 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:36:59,804 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed 2021-08-21 06:36:59,805 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped 2021-08-21 06:36:59,806 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done 2021-08-21 06:36:59,914 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). 2021-08-21 06:36:59,915 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:36:59,933 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits 2021-08-21 06:37:00,586 - stpipe.Detector1Pipeline.dq_init - INFO - Saved model in nrs_verify_nrs1_dq_init.fits 2021-08-21 06:37:00,586 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done 2021-08-21 06:37:00,697 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dq_init.fits>,). 2021-08-21 06:37:00,697 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:00,716 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits 2021-08-21 06:37:01,222 - stpipe.Detector1Pipeline.saturation - INFO - Detected 253780 saturated pixels 2021-08-21 06:37:01,240 - stpipe.Detector1Pipeline.saturation - INFO - Detected 128 A/D floor pixels 2021-08-21 06:37:01,531 - stpipe.Detector1Pipeline.saturation - INFO - Saved model in nrs_verify_nrs1_saturation.fits 2021-08-21 06:37:01,531 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done 2021-08-21 06:37:01,665 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). 2021-08-21 06:37:01,666 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:01,666 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped. 2021-08-21 06:37:01,667 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done 2021-08-21 06:37:01,769 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). 2021-08-21 06:37:01,770 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:01,789 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits 2021-08-21 06:37:02,488 - stpipe.Detector1Pipeline.superbias - INFO - Saved model in nrs_verify_nrs1_superbias.fits 2021-08-21 06:37:02,488 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done 2021-08-21 06:37:02,611 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_superbias.fits>,). 2021-08-21 06:37:02,612 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2021-08-21 06:37:02,630 - stpipe.Detector1Pipeline.refpix - INFO - Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits 2021-08-21 06:37:13,135 - stpipe.Detector1Pipeline.refpix - INFO - Saved model in nrs_verify_nrs1_refpix.fits 2021-08-21 06:37:13,135 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done 2021-08-21 06:37:13,438 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_refpix.fits>,). 2021-08-21 06:37:13,439 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:13,459 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits 2021-08-21 06:37:13,604 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored 2021-08-21 06:37:14,244 - stpipe.Detector1Pipeline.linearity - INFO - Saved model in nrs_verify_nrs1_linearity.fits 2021-08-21 06:37:14,245 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done 2021-08-21 06:37:14,369 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_linearity.fits>,). 2021-08-21 06:37:14,370 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None} 2021-08-21 06:37:14,432 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits 2021-08-21 06:37:19,566 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=2, nframes=1, groupgap=0 2021-08-21 06:37:19,567 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=65, nframes=1, groupgap=0 2021-08-21 06:37:20,335 - stpipe.Detector1Pipeline.dark_current - INFO - Saved model in nrs_verify_nrs1_dark_current.fits 2021-08-21 06:37:20,335 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done 2021-08-21 06:37:21,023 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dark_current.fits>,). 2021-08-21 06:37:21,024 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} 2021-08-21 06:37:21,047 - stpipe.Detector1Pipeline.jump - WARNING - Cannot apply jump detection when NGROUPS<=2; 2021-08-21 06:37:21,047 - stpipe.Detector1Pipeline.jump - WARNING - Jump step will be skipped 2021-08-21 06:37:21,344 - stpipe.Detector1Pipeline.jump - INFO - Saved model in nrs_verify_nrs1_jump.fits 2021-08-21 06:37:21,344 - stpipe.Detector1Pipeline.jump - INFO - Step jump done 2021-08-21 06:37:21,455 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_jump.fits>,). 2021-08-21 06:37:21,456 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} 2021-08-21 06:37:21,521 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits 2021-08-21 06:37:21,570 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits 2021-08-21 06:37:21,592 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols 2021-08-21 06:37:21,593 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal 2021-08-21 06:37:26,496 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 2 2021-08-21 06:37:26,496 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1 2021-08-21 06:37:26,699 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done 2021-08-21 06:37:26,834 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_jump.fits>,). 2021-08-21 06:37:26,835 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:26,888 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2021-08-21 06:37:26,901 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:37:27,018 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from nrs_verify_nrs1_jump.fits>,). 2021-08-21 06:37:27,019 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:27,074 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2021-08-21 06:37:27,086 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:37:27,226 - stpipe.Detector1Pipeline - INFO - Saved model in nrs_verify_nrs1_rateints.fits 2021-08-21 06:37:27,226 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1 2021-08-21 06:37:27,364 - stpipe.Detector1Pipeline - INFO - Saved model in nrs_verify_nrs1_rate.fits 2021-08-21 06:37:27,364 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe.Detector1Pipeline:step.py:321 Detector1Pipeline instance created. INFO stpipe.Detector1Pipeline.group_scale:step.py:321 GroupScaleStep instance created. INFO stpipe.Detector1Pipeline.dq_init:step.py:321 DQInitStep instance created. INFO stpipe.Detector1Pipeline.saturation:step.py:321 SaturationStep instance created. INFO stpipe.Detector1Pipeline.ipc:step.py:321 IPCStep instance created. INFO stpipe.Detector1Pipeline.superbias:step.py:321 SuperBiasStep instance created. INFO stpipe.Detector1Pipeline.refpix:step.py:321 RefPixStep instance created. INFO stpipe.Detector1Pipeline.rscd:step.py:321 RscdStep instance created. INFO stpipe.Detector1Pipeline.firstframe:step.py:321 FirstFrameStep instance created. INFO stpipe.Detector1Pipeline.lastframe:step.py:321 LastFrameStep instance created. INFO stpipe.Detector1Pipeline.linearity:step.py:321 LinearityStep instance created. INFO stpipe.Detector1Pipeline.dark_current:step.py:321 DarkCurrentStep instance created. INFO stpipe.Detector1Pipeline.reset:step.py:321 ResetStep instance created. INFO stpipe.Detector1Pipeline.persistence:step.py:321 PersistenceStep instance created. INFO stpipe.Detector1Pipeline.jump:step.py:321 JumpStep instance created. INFO stpipe.Detector1Pipeline.ramp_fit:step.py:321 RampFitStep instance created. INFO stpipe.Detector1Pipeline.gain_scale:step.py:321 GainScaleStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Detector1Pipeline:step.py:367 Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits',). INFO stpipe.Detector1Pipeline:step.py:371 Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}}} DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'nrs_verify_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for PERSAT reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RESET reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RSCD reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPDENSITY reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPPARS reference file is 'N/A'. INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:fits_support.py:701 Input model type Level1bModel does not match the requested model <class 'jwst.datamodels.ramp.RampModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline:fits_support.py:701 Input model type Level1bModel does not match the requested model <class 'jwst.datamodels.ramp.RampModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure INFO stpipe.Detector1Pipeline.group_scale:step.py:367 Step group_scale running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). INFO stpipe.Detector1Pipeline.group_scale:step.py:371 Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:49 NFRAMES and FRMDIVSR are equal; correction not needed INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:50 Step will be skipped INFO stpipe.Detector1Pipeline.group_scale:step.py:470 Step group_scale done INFO stpipe.Detector1Pipeline.dq_init:step.py:367 Step dq_init running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). INFO stpipe.Detector1Pipeline.dq_init:step.py:371 Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dq_init:dq_init_step.py:63 Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.dq_init:step.py:928 Saved model in nrs_verify_nrs1_dq_init.fits INFO stpipe.Detector1Pipeline.dq_init:step.py:470 Step dq_init done INFO stpipe.Detector1Pipeline.saturation:step.py:367 Step saturation running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dq_init.fits>,). INFO stpipe.Detector1Pipeline.saturation:step.py:371 Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.saturation:saturation_step.py:25 Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 253780 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 253780 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 128 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 128 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:step.py:928 Saved model in nrs_verify_nrs1_saturation.fits INFO stpipe.Detector1Pipeline.saturation:step.py:470 Step saturation done INFO stpipe.Detector1Pipeline.ipc:step.py:367 Step ipc running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). INFO stpipe.Detector1Pipeline.ipc:step.py:371 Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.ipc:step.py:401 Step skipped. INFO stpipe.Detector1Pipeline.ipc:step.py:470 Step ipc done INFO stpipe.Detector1Pipeline.superbias:step.py:367 Step superbias running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). INFO stpipe.Detector1Pipeline.superbias:step.py:371 Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:superbias_step.py:27 Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:step.py:928 Saved model in nrs_verify_nrs1_superbias.fits INFO stpipe.Detector1Pipeline.superbias:step.py:470 Step superbias done INFO stpipe.Detector1Pipeline.refpix:step.py:367 Step refpix running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_superbias.fits>,). INFO stpipe.Detector1Pipeline.refpix:step.py:371 Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:36 Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3188 3189 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3188 3189 INFO stpipe.Detector1Pipeline.refpix:step.py:928 Saved model in nrs_verify_nrs1_refpix.fits INFO stpipe.Detector1Pipeline.refpix:step.py:470 Step refpix done INFO stpipe.Detector1Pipeline.linearity:step.py:367 Step linearity running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_refpix.fits>,). INFO stpipe.Detector1Pipeline.linearity:step.py:371 Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.linearity:linearity_step.py:23 Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.linearity:step.py:928 Saved model in nrs_verify_nrs1_linearity.fits INFO stpipe.Detector1Pipeline.linearity:step.py:470 Step linearity done INFO stpipe.Detector1Pipeline.dark_current:step.py:367 Step dark_current running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_linearity.fits>,). INFO stpipe.Detector1Pipeline.dark_current:step.py:371 Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None} DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:dark_current_step.py:28 Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=2, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=2, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=2, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=2, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:step.py:928 Saved model in nrs_verify_nrs1_dark_current.fits INFO stpipe.Detector1Pipeline.dark_current:step.py:470 Step dark_current done INFO stpipe.Detector1Pipeline.jump:step.py:367 Step jump running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dark_current.fits>,). INFO stpipe.Detector1Pipeline.jump:step.py:371 Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". WARNING stpipe.Detector1Pipeline.jump:jump_step.py:36 Cannot apply jump detection when NGROUPS<=2; WARNING stpipe.Detector1Pipeline.jump:jump_step.py:37 Jump step will be skipped DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.jump:step.py:928 Saved model in nrs_verify_nrs1_jump.fits INFO stpipe.Detector1Pipeline.jump:step.py:470 Step jump done INFO stpipe.Detector1Pipeline.ramp_fit:step.py:367 Step ramp_fit running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.ramp_fit:step.py:371 Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=1 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 293551: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 293551: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -26394787840.000000, -6730.806641, 369509216.000000, 12928614.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -26394787840.000000, -6730.806641, 369509216.000000, 12928614.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (2, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (2, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 2048 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 4.816360 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 4.816360 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:step.py:470 Step ramp_fit done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<CubeModel(1, 2048, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline:step.py:928 Saved model in nrs_verify_nrs1_rateints.fits INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:step.py:928 Saved model in nrs_verify_nrs1_rate.fits INFO stpipe.Detector1Pipeline:step.py:470 Step Detector1Pipeline done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 ______________________ test_verify_detector1[saturation] _______________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._nrs1_saturation.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'saturation' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_saturation.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_saturation.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636914e070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 _______________________ test_verify_detector1[superbias] _______________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fy_nrs1_superbias.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'superbias' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_superbias.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_superbias.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636608a6d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 ________________________ test_verify_detector1[refpix] _________________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s_verify_nrs1_refpix.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'refpix' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_refpix.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_refpix.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f62fd502370>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 _______________________ test_verify_detector1[linearity] _______________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fy_nrs1_linearity.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'linearity' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_linearity.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_linearity.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636591ec40>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 _____________________ test_verify_detector1[dark_current] ______________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...1_dark_current.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'dark_current' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_dark_current.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_dark_current.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f633e189910>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 _________________________ test_verify_detector1[jump] __________________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h/nrs_verify_nrs1_jump.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'jump' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_jump.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_jump.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b40af0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 _________________________ test_verify_detector1[rate] __________________________ run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h/nrs_verify_nrs1_rate.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'rate' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_rate.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367c18ee0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 ________________________ test_verify_image2[assign_wcs] ________________________ run_image2 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._nrs1_assign_wcs.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'assign_wcs' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'assign_wcs', 'flat_field', 'cal', ]) def test_verify_image2(run_image2, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_assign_wcs.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_assign_wcs.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f632a58c610>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:96: AssertionError ---------------------------- Captured stderr setup ----------------------------- 2021-08-21 06:37:46,948 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created. 2021-08-21 06:37:46,949 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:37:46,950 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:37:46,951 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:37:46,952 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:37:46,953 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created. 2021-08-21 06:37:46,953 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:37:46,953 - stpipe - INFO - OS: Linux 2021-08-21 06:37:47,118 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits',). 2021-08-21 06:37:47,122 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}}} 2021-08-21 06:37:47,157 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'nrs_verify_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'disperser', 'distortion', 'drizpars', 'filteroffset', 'fore', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'specwcs', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:37:47,188 - stpipe.Image2Pipeline - INFO - Override for AREA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits'. 2021-08-21 06:37:47,188 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf'. 2021-08-21 06:37:47,190 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf'. 2021-08-21 06:37:47,191 - stpipe.Image2Pipeline - INFO - Override for DFLAT reference file is 'N/A'. 2021-08-21 06:37:47,191 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Override for FFLAT reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Override for FLAT reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_flat_0061.fits'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Override for FPA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf'. 2021-08-21 06:37:47,197 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is 'N/A'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Override for SFLAT reference file is 'N/A'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:37:47,200 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf'. 2021-08-21 06:37:47,201 - stpipe.Image2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:37:47,201 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ... 2021-08-21 06:37:47,202 - stpipe.Image2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 2021-08-21 06:37:47,202 - stpipe.Image2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits ... 2021-08-21 06:37:47,358 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_rate.fits>,). 2021-08-21 06:37:47,359 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:37:47,509 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1973863539999999 deg 2021-08-21 06:37:47,509 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.338891834 deg 2021-08-21 06:37:47,510 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_y correction: 0.00038973010203694256 deg 2021-08-21 06:37:47,510 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_x correction: -8.547146608108846e-05 deg 2021-08-21 06:37:47,621 - stpipe.Image2Pipeline.assign_wcs - INFO - Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. 2021-08-21 06:37:47,763 - stpipe.Image2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 06:37:47,977 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 2021-08-21 06:37:47,977 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 2021-08-21 06:37:47,977 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:37:48,228 - stpipe.Image2Pipeline.assign_wcs - INFO - Saved model in nrs_verify_nrs1_assign_wcs.fits 2021-08-21 06:37:48,229 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:37:48,347 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_assign_wcs.fits>,). 2021-08-21 06:37:48,348 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:37:48,354 - stpipe.Image2Pipeline.flat_field - WARNING - Exposure type is NRS_VERIFY; flat-fielding will be skipped because it is not currently supported for this mode. 2021-08-21 06:37:48,778 - stpipe.Image2Pipeline.flat_field - INFO - Saved model in nrs_verify_nrs1_flat_field.fits 2021-08-21 06:37:48,779 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:37:48,898 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_flat_field.fits>,). 2021-08-21 06:37:48,899 - stpipe.Image2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: N/A 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - WARNING - No PHOTOM reference file found 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - WARNING - Photom step will be skipped 2021-08-21 06:37:49,341 - stpipe.Image2Pipeline.photom - INFO - Saved model in nrs_verify_nrs1_photom.fits 2021-08-21 06:37:49,342 - stpipe.Image2Pipeline.photom - INFO - Step photom done 2021-08-21 06:37:49,342 - stpipe.Image2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 2021-08-21 06:37:49,343 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2 2021-08-21 06:37:49,582 - stpipe.Image2Pipeline - INFO - Saved model in nrs_verify_nrs1_cal.fits 2021-08-21 06:37:49,582 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done ------------------------------ Captured log setup ------------------------------ DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-IMAGE2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-IMAGE2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-IMAGE2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-IMAGE2PIPELINE reference files found. INFO stpipe.Image2Pipeline:step.py:321 Image2Pipeline instance created. INFO stpipe.Image2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Image2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Image2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Image2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Image2Pipeline.resample:step.py:321 ResampleStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Image2Pipeline:step.py:367 Step Image2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits',). INFO stpipe.Image2Pipeline:step.py:371 Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}}} DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Image2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'nrs_verify_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'disperser', 'distortion', 'drizpars', 'filteroffset', 'fore', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'specwcs', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Image2Pipeline:pipeline.py:288 Override for AREA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for DFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for FFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for FLAT reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_flat_0061.fits'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for FPA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for SFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Image2Pipeline:calwebb_image2.py:49 Starting calwebb_image2 ... INFO stpipe.Image2Pipeline:calwebb_image2.py:58 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 INFO stpipe.Image2Pipeline:calwebb_image2.py:125 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits ... DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Image2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_rate.fits>,). INFO stpipe.Image2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1973863539999999 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1973863539999999 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.338891834 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.338891834 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.00038973010203694256 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.00038973010203694256 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: -8.547146608108846e-05 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: -8.547146608108846e-05 deg DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:776 Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:776 Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:util.py:957 Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:util.py:957 Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:81 assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:81 assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:step.py:928 Saved model in nrs_verify_nrs1_assign_wcs.fits INFO stpipe.Image2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Image2Pipeline.flat_field:step.py:367 Step flat_field running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_assign_wcs.fits>,). INFO stpipe.Image2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:72 Input is ImageModel of exposure type NRS_VERIFY WARNING stpipe.Image2Pipeline.flat_field:flat_field_step.py:78 Exposure type is NRS_VERIFY; flat-fielding will be skipped because it is not currently supported for this mode. DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.flat_field:step.py:928 Saved model in nrs_verify_nrs1_flat_field.fits INFO stpipe.Image2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Image2Pipeline.photom:step.py:367 Step photom running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_flat_field.fits>,). INFO stpipe.Image2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None} DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:photom_step.py:33 Input is ImageModel DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.photom:photom_step.py:52 Using photom reference file: N/A INFO stpipe.Image2Pipeline.photom:photom_step.py:53 Using area reference file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits WARNING stpipe.Image2Pipeline.photom:photom_step.py:57 No PHOTOM reference file found WARNING stpipe.Image2Pipeline.photom:photom_step.py:58 Photom step will be skipped DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.photom:step.py:928 Saved model in nrs_verify_nrs1_photom.fits INFO stpipe.Image2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Image2Pipeline:calwebb_image2.py:164 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 INFO stpipe.Image2Pipeline:calwebb_image2.py:80 ... ending calwebb_image2 INFO stpipe.Image2Pipeline:step.py:928 Saved model in nrs_verify_nrs1_cal.fits INFO stpipe.Image2Pipeline:step.py:470 Step Image2Pipeline done ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 ________________________ test_verify_image2[flat_field] ________________________ run_image2 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._nrs1_flat_field.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'assign_wcs', 'flat_field', 'cal', ]) def test_verify_image2(run_image2, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f635759aa30>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:96: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 ___________________________ test_verify_image2[cal] ____________________________ run_image2 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...uth/nrs_verify_nrs1_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'assign_wcs', 'flat_field', 'cal', ]) def test_verify_image2(run_image2, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63663665e0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:96: AssertionError ------------------------------ Captured log call ------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 =============================== warnings summary =============================== miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py: 2 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py: 20 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_image2.py: 1 warning miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py: 2 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py: 28 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py: 10 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py: 1 warning /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/utils.py:72: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations indx = np.asarray(np.floor(np.asarray(value) + 0.5), dtype=np.int) miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py: 2 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py: 57 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py: 1 warning miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py: 151 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py: 28 warnings miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py: 5 warnings /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/gwcs/geometry.py:203: RuntimeWarning: invalid value encountered in remainder lon = np.mod(lon, 360.0 * u.deg if nquant else 360.0) miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:323: RuntimeWarning: overflow encountered in multiply self.input.var_poisson *= sens2d**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:324: RuntimeWarning: overflow encountered in multiply self.input.var_rnoise *= sens2d**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating meta.exposure.readpatt the following error occurred: 'ALLIRS2' is not one of ['ACQ1', 'ACQ2', 'BRIGHT1', 'BRIGHT2', 'DEEP2', 'DEEP8', 'FAST', 'FASTGRPAVG', 'FASTGRPAVG8', 'FASTGRPAVG16', 'FASTGRPAVG32', 'FASTGRPAVG64', 'FASTR1', 'FASTR100', 'FGS', 'FGS60', 'FGS8370', 'FGS840', 'FGSRAPID', 'FINEGUIDE', 'ID', 'MEDIUM2', 'MEDIUM8', 'NIS', 'NISRAPID', 'NRS', 'NRSIRS2', 'NRSN16R4', 'NRSN32R8', 'NRSN8R2', 'NRSRAPID', 'NRSIRS2RAPID', 'NRSRAPIDD1', 'NRSRAPIDD2', 'NRSRAPIDD6', 'NRSSLOW', 'RAPID', 'SHALLOW2', 'SHALLOW4', 'SLOW', 'SLOWR1', 'TRACK', 'ANY', 'N/A'] Failed validating 'enum' in schema: OrderedDict([('title', 'Readout pattern'), ('type', 'string'), ('enum', ['ACQ1', 'ACQ2', 'BRIGHT1', 'BRIGHT2', 'DEEP2', 'DEEP8', 'FAST', 'FASTGRPAVG', 'FASTGRPAVG8', 'FASTGRPAVG16', 'FASTGRPAVG32', 'FASTGRPAVG64', 'FASTR1', 'FASTR100', 'FGS', 'FGS60', 'FGS8370', 'FGS840', 'FGSRAPID', 'FINEGUIDE', 'ID', 'MEDIUM2', 'MEDIUM8', 'NIS', 'NISRAPID', 'NRS', 'NRSIRS2', 'NRSN16R4', 'NRSN32R8', 'NRSN8R2', 'NRSRAPID', 'NRSIRS2RAPID', 'NRSRAPIDD1', 'NRSRAPIDD2', 'NRSRAPIDD6', 'NRSSLOW', 'RAPID', 'SHALLOW2', 'SHALLOW4', 'SLOW', 'SLOWR1', 'TRACK', 'ANY', 'N/A']), ('fits_ke ... warnings.warn(errmsg, ValidationWarning) miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/ramp_fitting/ols_fit.py:1169: RuntimeWarning: invalid value encountered in multiply var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0) miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:813: RuntimeWarning: overflow encountered in multiply slit.var_flat *= conversion**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:806: RuntimeWarning: divide by zero encountered in true_divide slit.data /= conversion miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_photom_inverse /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:806: RuntimeWarning: invalid value encountered in true_divide slit.data /= conversion miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:809: RuntimeWarning: overflow encountered in multiply slit.var_poisson *= conversion**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:811: RuntimeWarning: overflow encountered in multiply slit.var_rnoise *= conversion**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/flatfield/flat_field.py:422: RuntimeWarning: invalid value encountered in multiply slit.var_flat = slit.data**2 / flat_data_squared * slit_flat.err**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/photom/photom.py:804: RuntimeWarning: invalid value encountered in multiply slit.data *= conversion miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/barshadow/bar_shadow.py:82: RuntimeWarning: overflow encountered in true_divide slitlet.var_poisson /= correction.data**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/barshadow/bar_shadow.py:85: RuntimeWarning: overflow encountered in true_divide slitlet.var_flat /= correction.data**2 miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_subarray.py::test_nirspec_detector1[group_scale] miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/ramp_fitting/ols_fit.py:1456: RuntimeWarning: divide by zero encountered in true_divide var_p2 = 1 / (s_inv_var_p3.sum(axis=0)) miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_f170lp] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/datamodels/util.py:209: NoTypeWarning: model_type not found. Opening jw00011001001_01120_00001_nrs1_rate.fits as a ImageModel warnings.warn(f"model_type not found. Opening {file_name} as a {class_name}", miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_f170lp] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/datamodels/util.py:209: NoTypeWarning: model_type not found. Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_f1700/truth/jw00011001001_01120_00001_nrs1_assign_wcs.fits as a ImageModel warnings.warn(f"model_type not found. Opening {file_name} as a {class_name}", miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_opaque] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/datamodels/util.py:209: NoTypeWarning: model_type not found. Opening jw00011001001_01120_00002_nrs1_rate.fits as a ImageModel warnings.warn(f"model_type not found. Opening {file_name} as a {class_name}", miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_opaque] /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/datamodels/util.py:209: NoTypeWarning: model_type not found. Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_opaq0/truth/jw00011001001_01120_00002_nrs1_assign_wcs.fits as a ImageModel warnings.warn(f"model_type not found. Opening {file_name} as a {class_name}", -- Docs: https://docs.pytest.org/en/stable/warnings.html - generated html file: file:///data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmprcgym63w/regtest_report.html - =========================== short test summary info ============================ FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[extract_2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[wavecorr] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[photom] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[calints] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[x1dints] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_nrs2_nodata_strun FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-extract_2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-wavecorr] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-pathloss] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-srctype] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-extract_2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-wavecorr] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-pathloss] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-srctype] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-extract_2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-wavecorr] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-pathloss] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-srctype] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[crf] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[extract_2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[assign_wcs] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[msa_flagging] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[masterbg2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_user FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[extract_2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[wavecorr] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[srctype] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[pathloss] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[barshadow] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[cal] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-crf] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-s2d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-x1d] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[saturation] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[superbias] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[refpix] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[linearity] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dark_current] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[jump] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[rate] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[assign_wcs] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[flat_field] FAILED ../../miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[cal] = 79 failed, 70 passed, 18 skipped, 302 deselected, 361 warnings in 2636.06s (0:43:56) =
HTML(html_report)
Report generated on 21-Aug-2021 at 06:40:50 by pytest-html v3.1.1
| BUILD_ID | 90 |
| BUILD_NUMBER | 90 |
| BUILD_TAG | jenkins-Notebooks-jwst_validation_notebooks_spacetelescope-90 |
| BUILD_URL | https://plwishmaster.stsci.edu:8081/job/Notebooks/job/jwst_validation_notebooks_spacetelescope/90/ |
| EXECUTOR_NUMBER | 10 |
| GIT_BRANCH | origin/master |
| GIT_COMMIT | a0fcf1da8e24c3771cfdd64717758394040055d7 |
| GIT_URL | https://github.com/spacetelescope/jwst_validation_notebooks |
| JENKINS_URL | https://plwishmaster.stsci.edu:8081/ |
| JOB_NAME | Notebooks/jwst_validation_notebooks_spacetelescope |
| NODE_NAME | jwcalibdev.stsci.edu |
| Packages | {"pluggy": "0.13.1", "py": "1.10.0", "pytest": "6.2.4"} |
| Platform | Linux-3.10.0-1160.31.1.el7.x86_64-x86_64-with-glibc2.10 |
| Plugins | {"asdf": "2.8.1", "ci-watson": "0.5", "forked": "1.3.0", "html": "3.1.1", "jwst": "1.2.3", "metadata": "1.11.0", "xdist": "2.3.0"} |
| Python | 3.8.10 |
| WORKSPACE | /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope |
149 tests ran in 2634.33 seconds.
(Un)check the boxes to filter the results.
70 passed, 18 skipped, 79 failed, 0 errors, 0 expected failures, 0 unexpected passes| Result | Test | Duration | Links |
|---|---|---|---|
| No results found. Try to check the filters | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[extract_2d] | 0.38 | |
|
run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes... 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308bc9580>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 4201920 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[wavecorr] | 0.26 | |
|
run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..., 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 199 E b: 198 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 60 E b: 62 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630824f070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 4970880 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[flat_field] | 0.34 | |
|
run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes... 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 208 E b: 207 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 60 E b: 62 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b2a0d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 5736960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[photom] | 0.70 | |
|
run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'photom' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_photom.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_photom.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 213 E b: 212 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 65 E b: 67 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b54f10>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_photom.fits HTTP/1.1" 200 5739840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[calints] | 0.36 | |
|
run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'calints' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_calints.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_calints.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 216 E b: 215 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 65 E b: 67 E Extra keyword 'SRCXPOS' in b: -5.33232539934e-07 E Extra keyword 'SRCYPOS' in b: -2.0494408111299e-06 E Keyword NAXIS2 has different values: E a> 32 E b> 31 E Keyword SLTSIZE2 has different values: E a> 36 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 2 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 3 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 E b: 2048 x 31 E No further data comparison performed. E E Extension HDU 5 (AREA, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 32 E b> 31 E E Data contains differences: E Data dimensions differ: E a: 2048 x 32 x 3 E b: 2048 x 31 x 3 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b62070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_calints.fits HTTP/1.1" 200 5739840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[x1dints] | 0.46 | |
|
run_tso_spec2_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1dints' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ['assign_wcs', 'extract_2d', 'wavecorr', 'flat_field', 'photom', 'calints', 'x1dints']) def test_nirspec_brightobj_spec2(run_tso_spec2_pipeline, fitsdiff_default_kwargs, suffix): """ Regression test of calwebb_spec2 pipeline performed on NIRSpec fixed-slit data that uses the NRS_BRIGHTOBJ mode (S1600A1 slit). """ rtdata = run_tso_spec2_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_brightobj_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_x1dints.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/truth/jw84600042001_02101_00001_nrs2_x1dints.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 219 E b: 218 E Extra keyword 'S_WAVCOR' in a: 'COMPLETE' E E Extension HDU 2 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -5.33232539934e-07 E Keyword SRCYPOS has different values: E a> 0.0 E b> -2.0494408111299e-06 E E Data contains differences: E Column FLUX data differs in row 4: E a> 5252083.361148835 E b> 5839510.679244995 E Column FLUX data differs in row 5: E a> 4869666.457176209 E b> 5723816.752433776 E Column FLUX data differs in row 6: E a> 3297265.112400055 E b> 4111152.648925782 E Column FLUX data differs in row 7: E a> 3075041.3164496426 E b> 3837684.2364668846 E Column FLUX data differs in row 8: E a> 5074391.007423401 E b> 6208268.165588379 E Column FLUX data differs in row 9: E a> 3532945.4243183145 E b> 4404144.197702408 E Column FLUX data differs in row 10: E a> 3064777.9405117035 E b> 3787600.3682613373 E Column FLUX data differs in row 11: E a> 4587812.4833107 E b> 5518095.61252594 E Column FLUX data differs in row 12: E a> 4692223.787307739 E b> 5792156.338691711 E Column FLUX data differs in row 13: E a> 3237568.736076356 E b> 4358486.771583557 E ...3191 additional difference(s) found. E ... E 3201 different table data element(s) found (8.68% different). E E Extension HDU 3 (EXTRACT1D, 2): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -5.33232539934e-07 E Keyword SRCYPOS has different values: E a> 0.0 E b> -2.0494408111299e-06 E E Data contains differences: E Column FLUX data differs in row 4: E a> -12219555.735588076 E b> -13271518.70727539 E Column FLUX data differs in row 5: E a> -9012681.30540848 E b> -9543453.81259918 E Column FLUX data differs in row 6: E a> -12670447.260141373 E b> -13155812.919139866 E Column FLUX data differs in row 7: E a> -10005099.35617447 E b> -10994460.940361023 E Column FLUX data differs in row 8: E a> -10103163.421154022 E b> -10879022.479057312 E Column FLUX data differs in row 9: E a> -9251464.724540712 E b> -9879301.190376282 E Column FLUX data differs in row 10: E a> -10005953.580141068 E b> -10359490.692615509 E Column FLUX data differs in row 11: E a> -11743096.232414247 E b> -12350980.758666992 E Column FLUX data differs in row 12: E a> -11047315.418720245 E b> -11685196.51889801 E Column FLUX data differs in row 13: E a> -12650693.416595463 E b> -13656512.022018433 E ...3191 additional difference(s) found. E ... E 3201 different table data element(s) found (8.68% different). E E Extension HDU 4 (EXTRACT1D, 3): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -5.33232539934e-07 E Keyword SRCYPOS has different values: E a> 0.0 E b> -2.0494408111299e-06 E E Data contains differences: E Column FLUX data differs in row 4: E a> -1703198.3137130742 E b> -1409407.8540802002 E Column FLUX data differs in row 5: E a> -966681.9237172606 E b> -754383.9626014231 E Column FLUX data differs in row 6: E a> -6079436.887055635 E b> -6127976.574003697 E Column FLUX data differs in row 7: E a> -4843835.3687524805 E b> -5001724.869012833 E Column FLUX data differs in row 8: E a> -4864043.176174164 E b> -5217665.135860443 E Column FLUX data differs in row 9: E a> -2234757.483005524 E b> -2022011.2800598145 E Column FLUX data differs in row 10: E a> -2243448.8981962204 E b> -2404173.821210861 E Column FLUX data differs in row 11: E a> -3476174.6525764475 E b> -3255656.599998474 E Column FLUX data differs in row 12: E a> -2331014.8119926453 E b> -2176809.549331665 E Column FLUX data differs in row 13: E a> -1589942.5894021993 E b> -1126596.2570905685 E ...3183 additional difference(s) found. E ... E 3193 different table data element(s) found (8.66% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307ae4e80>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py:55: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_x1dints.fits HTTP/1.1" 200 1016640 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_nrs2_nodata_strun | 0.95 | |
|
_jail = '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_strun0' rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ut': None, 'remote_results_path': None, 'test_name': None, 'traceback': None, 'truth': None, 'truth_remote': None} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} caplog = <_pytest.logging.LogCaptureFixture object at 0x7f63081ff610> @pytest.mark.bigdata def test_nirspec_nrs2_nodata_strun(_jail, rtdata, fitsdiff_default_kwargs, caplog): """ Test of calwebb_spec2 pipeline performed on NIRSpec IFU exposure that has a filter/grating combination that produces no data on the NRS2 detector. Pipeline should return with non-zero exit status. """ # Get the input file rtdata.get_data('nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits') # Call the Spec2Pipeline cmd = [ 'strun', 'jwst.pipeline.Spec2Pipeline', rtdata.input] > status = subprocess.run(cmd) /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py:108: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/subprocess.py:493: in run with Popen(*popenargs, **kwargs) as process: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/subprocess.py:858: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <subprocess.Popen object at 0x7f6308bbd280> args = ['strun', 'jwst.pipeline.Spec2Pipeline', '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_strun0/jw84700006001_02101_00001_nrs2_rate.fits'] executable = b'strun', preexec_fn = None, close_fds = True, pass_fds = () cwd = None, env = None, startupinfo = None, creationflags = 0, shell = False p2cread = -1, p2cwrite = -1, c2pread = -1, c2pwrite = -1, errread = -1 errwrite = -1, restore_signals = True, start_new_session = False def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, start_new_session): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and not close_fds and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session): self._posix_spawn(args, executable, env, restore_signals, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _posixsubprocess.fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, preexec_fn) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) child_exec_never_called = (err_msg == "noexec") if child_exec_never_called: err_msg = "" # The error must be from chdir(cwd). err_filename = cwd else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: 'strun' /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/subprocess.py:1704: FileNotFoundError -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-extract_2d] | 0.55 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636940b4f0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 11859840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-wavecorr] | 0.52 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...r.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 67 E b: 69 E Extra keyword 'SRCXPOS' in b: 0.004938526981283373 E Extra keyword 'SRCYPOS' in b: -0.02795306204991911 E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63683ea6a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 11859840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-flat_field] | 0.49 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Headers have different number of cards: E a: 67 E b: 69 E Extra keyword 'SRCXPOS' in b: 0.004938526981283373 E Extra keyword 'SRCYPOS' in b: -0.02795306204991911 E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 20 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 21 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 22 (FLATFIELD_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 23 (FLATFIELD_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 24 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 26 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 27 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 28 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 29 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 30 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 31 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 32 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 33 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 34 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 35 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 36 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 37 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630662f1c0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 14811840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-pathloss] | 0.52 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 26 (FLATFIELD_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 27 (FLATFIELD_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 28 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 29 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 30 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 31 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 32 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 33 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 34 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 35 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 36 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 37 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 38 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 39 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 40 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 41 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 42 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 43 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 44 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 45 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367b9ea00>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 17591040 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-srctype] | 0.55 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...pe.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6369565670>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 11859840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-cal] | 0.62 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 63 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 63 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 67 E b> 57 E E Data contains differences: E Data dimensions differ: E a: 1974 x 67 E b: 1974 x 57 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 26 (FLATFIELD_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 27 (FLATFIELD_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 28 (PHOTOM_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 29 (PHOTOM_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 69 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 2048 x 69 E b: 2048 x 63 E No further data comparison performed. E E Extension HDU 30 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 31 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 32 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 33 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 46 E b> 39 E E Data contains differences: E Data dimensions differ: E a: 2048 x 46 E b: 2048 x 39 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 43 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 44 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 45 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 46 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 41 E E Data contains differences: E Data dimensions differ: E a: 775 x 49 E b: 775 x 41 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368cc2c70>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 18639360 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-s2d] | 0.40 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 63 E b> 58 E Keyword SLTSTRT2 has different values: E a> 1058 E ? ^ E b> 1059 E ? ^ E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 67 E b> 57 E Keyword SLTSTRT2 has different values: E a> 1021 E ? ^ E b> 1022 E ? ^ E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 69 E b> 63 E Keyword SLTSTRT2 has different values: E a> 981 E b> 982 E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 46 E b> 39 E Keyword SLTSTRT2 has different values: E a> 961 E b> 963 E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 49 E b> 41 E Keyword SLTSTRT2 has different values: E a> 923 E b> 924 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63681e03a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 8412480 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-x1d] | 0.41 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_x1d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw00023001001_01101_00001_nrs1_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (EXTRACT1D, 3): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> 0.004938526981283373 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02795306204991911 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630763f640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 1491840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-extract_2d] | 0.27 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308022340>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_extract_2d.fits HTTP/1.1" 200 2983680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-wavecorr] | 0.27 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...r.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 46 E b: 48 E Extra keyword 'SRCXPOS' in b: -1.4909106595922e-05 E Extra keyword 'SRCYPOS' in b: -0.02798525129989059 E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63084dc910>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_wavecorr.fits HTTP/1.1" 200 2983680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-flat_field] | 0.22 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 46 E b: 48 E Extra keyword 'SRCXPOS' in b: -1.4909106595922e-05 E Extra keyword 'SRCYPOS' in b: -0.02798525129989059 E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (FLATFIELD_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (FLATFIELD_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308abcb20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_flat_field.fits HTTP/1.1" 200 4423680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-pathloss] | 0.31 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (FLATFIELD_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (FLATFIELD_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636840eac0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_pathloss.fits HTTP/1.1" 200 4423680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-srctype] | 0.24 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...pe.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368cc2c40>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_srctype.fits HTTP/1.1" 200 2983680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-cal] | 0.33 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s2_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 8 (FLATFIELD_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 9 (FLATFIELD_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 10 (PHOTOM_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E Extension HDU 11 (PHOTOM_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 59 E b> 58 E E Data contains differences: E Data dimensions differ: E a: 2048 x 59 E b: 2048 x 58 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308adee80>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 5379840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-s2d] | 0.78 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s2_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 65 E b> 61 E Keyword SLTSTRT2 has different values: E a> 6 E b> 7 E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63079c62e0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_s2d.fits HTTP/1.1" 200 2424960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-x1d] | 0.26 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s2_x1d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jw93045010001_02101_00001_nrs2_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Keyword SRCXPOS has different values: E a> 0.0 E b> -1.4909106595922e-05 E Keyword SRCYPOS has different values: E a> 0.0 E b> -0.02798525129989059 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307f54e20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_x1d.fits HTTP/1.1" 200 374400 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-extract_2d] | 0.42 | |
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run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63084dc400>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_extract_2d.fits HTTP/1.1" 200 6272640 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-wavecorr] | 0.81 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...r.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367c115b0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_wavecorr.fits HTTP/1.1" 200 6275520 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-flat_field] | 0.34 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 20 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 21 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 25 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368f6cfa0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_flat_field.fits HTTP/1.1" 200 7266240 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-pathloss] | 0.38 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 26 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 27 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 28 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 29 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 30 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 31 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 32 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 33 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 34 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368db5700>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_pathloss.fits HTTP/1.1" 200 8657280 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-srctype] | 0.40 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...pe.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6309887eb0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_srctype.fits HTTP/1.1" 200 6272640 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-cal] | 0.51 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 8 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 47 E b> 46 E E Data contains differences: E Data dimensions differ: E a: 1337 x 47 E b: 1337 x 46 E No further data comparison performed. E E Extension HDU 10 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 11 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 12 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 13 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 49 E b> 48 E E Data contains differences: E Data dimensions differ: E a: 1435 x 49 E b: 1435 x 48 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 25 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 53 E b> 52 E E Data contains differences: E Data dimensions differ: E a: 1407 x 53 E b: 1407 x 52 E No further data comparison performed. E E Extension HDU 26 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 27 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 28 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 29 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 30 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 31 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 32 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 33 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E Extension HDU 34 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 30 E b> 29 E E Data contains differences: E Data dimensions differ: E a: 1383 x 30 E b: 1383 x 29 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63084e9e20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_cal.fits HTTP/1.1" 200 8663040 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-s2d] | 0.30 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s1_s2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "wavecorr", "flat_field", "pathloss", "srctype", "cal", "s2d", "x1d"]) def test_nirspec_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec FS exposures.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_fs_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/truth/jwtest1013001_01101_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 47 E b> 46 E Keyword SLTSTRT2 has different values: E a> 159 E b> 160 E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 49 E b> 48 E Keyword SLTSTRT2 has different values: E a> 122 E b> 123 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 53 E b> 52 E Keyword SLTSTRT2 has different values: E a> 82 E b> 83 E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 30 E b> 29 E Keyword SLTSTRT2 has different values: E a> 62 E b> 63 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63695a4ee0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py:70: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_s2d.fits HTTP/1.1" 200 5232960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[crf] | 0.64 | |
|
run_pipeline = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'crf' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [35, 11]: E a> 33816576 E ? ^^ E b> 33816593 E ? ^^ E Data differs at [432, 15]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [544, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [109, 21]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [317, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1168, 28]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [625, 33]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [379, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [380, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E Extension HDU 9 (DQ, 2): E E Data contains differences: E Data differs at [730, 9]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [674, 10]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [306, 11]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1336, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [452, 18]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1198, 22]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [93, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1122, 26]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [565, 41]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E Extension HDU 16 (DQ, 3): E E Data contains differences: E Data differs at [703, 8]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [35, 11]: E a> 33816576 E ? ^^ E b> 33816593 E ? ^^ E Data differs at [432, 15]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [544, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1144, 19]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [109, 21]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [625, 33]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [379, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [380, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E Extension HDU 23 (DQ, 4): E E Data contains differences: E Data differs at [674, 10]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [306, 11]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1336, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1198, 22]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [93, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1831, 24]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1122, 26]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1164, 39]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [754, 40]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1660, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 10 different pixels found (0.01% different). E E Extension HDU 30 (DQ, 5): E E Data contains differences: E Data differs at [674, 10]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [306, 11]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1336, 17]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1198, 22]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [93, 23]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1122, 26]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1164, 39]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [565, 41]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E Data differs at [1660, 45]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 9 different pixels found (0.01% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63685e2b80>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:46: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits HTTP/1.1" 200 14901120 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[s2d] | 0.74 | |
|
run_pipeline = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 0.0002, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.01, Absolute tolerance: 0.0002 E E Extension HDU 1 (SCI, 1): E E Data contains differences: E Data differs at [36, 1]: E a> 33.11916 E b> 34.672256 E Data differs at [37, 1]: E a> 28.968235 E b> 27.085396 E Data differs at [704, 3]: E a> 30.883917 E b> 33.912716 E Data differs at [705, 3]: E a> 27.651571 E b> 31.413282 E Data differs at [2027, 3]: E a> -8.060477 E b> -25.82998 E Data differs at [2028, 3]: E a> 26.505146 E b> -28.224813 E Data differs at [704, 4]: E a> 33.062157 E b> 33.914352 E Data differs at [705, 4]: E a> 32.35609 E b> 33.373066 E Data differs at [1971, 4]: E a> -20.490318 E b> -29.006193 E Data differs at [1972, 4]: E a> -16.847645 E b> -30.439941 E ... E 86 different pixels found (0.06% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133403 different pixels found (99.73% different). E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [36, 1]: E a> 0.7884687 E b> 0.5702864 E Data differs at [37, 1]: E a> 0.5679413 E b> 0.026298497 E Data differs at [704, 3]: E a> 0.78772396 E b> 0.6457121 E Data differs at [705, 3]: E a> 0.78301054 E b> 0.5770483 E Data differs at [2027, 3]: E a> 1.2563422 E b> 1.1624389 E Data differs at [2028, 3]: E a> 0.9187524 E b> 0.7093565 E Data differs at [704, 4]: E a> 0.7875935 E b> 0.7476469 E Data differs at [705, 4]: E a> 0.78308487 E b> 0.7341094 E Data differs at [1971, 4]: E a> 1.5306216 E b> 1.269689 E Data differs at [1972, 4]: E a> 1.530625 E b> 1.1257659 E ... E 91 different pixels found (0.07% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133393 different pixels found (99.73% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133398 different pixels found (99.73% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 133403 different pixels found (99.73% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63663e1070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:46: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits HTTP/1.1" 200 4008960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[x1d] | 0.22 | |
|
run_pipeline = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h_remote': 'jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'x1d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) def test_nirspec_fs_spec3(run_pipeline, rtdata_module, fitsdiff_default_kwargs, suffix): """Test spec3 pipeline on a set of NIRSpec FS exposures.""" rtdata = rtdata_module output = f"jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_fs_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-2 fitsdiff_default_kwargs["atol"] = 2e-4 # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/truth/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Headers contain differences: E Headers have different number of cards: E a: 73 E b: 74 E Extra keyword 'SRCTYPE' in b: 'POINT' E E Data contains differences: E Column FLUX data differs in row 1166: E a> 20552185.34485313 E b> -2275204.5859990204 E Column FLUX data differs in row 1167: E a> 214990901.62202883 E b> 216343639.0930421 E Column FLUX data differs in row 1388: E a> 2518372174.9189553 E b> -173082809.74596182 E Column FLUX data differs in row 1389: E a> 244159868.5289282 E b> -196176042.26819104 E Column FLUX data differs in row 2417: E a> -180719724.93147817 E b> -205129919.95675185 E Column FLUX data differs in row 2418: E a> -184725402.79672292 E b> -197045698.6753315 E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E ...10022 additional difference(s) found. E ... E 10032 different table data element(s) found (16.67% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63681bd0d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py:46: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits HTTP/1.1" 200 576000 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_photom | 92.74 | |
|
run_photom = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...S1_photom.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata def test_photom(run_photom, fitsdiff_default_kwargs): """Regression test matching output files""" > rt.is_like_truth(run_photom, fitsdiff_default_kwargs, 'photom', truth_path=TRUTH_PATH) E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_photom.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/truth/jwdata0010010_11010_0001_NRS1_photom.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Primary HDU: E E Headers contain differences: E Headers have different number of cards: E a: 207 E b: 216 E Extra keyword 'EPH_TIME' in b: 0.0 E Extra keyword 'JWST_DX' in b: 0.0 E Extra keyword 'JWST_DY' in b: 0.0 E Extra keyword 'JWST_DZ' in b: 0.0 E Extra keyword 'JWST_X' in b: 0.0 E Extra keyword 'JWST_Y' in b: 0.0 E Extra keyword 'JWST_Z' in b: 0.0 E Extra keyword 'REFFRAME' in b: 'N/A' E Inconsistent duplicates of keyword '' : E Occurs 44 time(s) in a, 45 times in (b) E Keyword [9] has different values: E a> Aperture information E b> JWST ephemeris information E Keyword [10] has different values: E a> Time information E b> Aperture information E Keyword [11] has different values: E a> Guide star information E b> Time information E Keyword [12] has different values: E a> Reference file information E b> Guide star information E Keyword [13] has different values: E a> CRDS parameters E b> Reference file information E Keyword [14] has different values: E a> Pixel area reference file information E b> CRDS parameters E Keyword [15] has different values: E a> Nirspec Camera reference file information E ? ^ -- --- ---- E b> Pixel area reference file information E ? ^ +++++ E Keyword [16] has different values: E a> Nirspec Collimator reference file information E ? ^^^^ --- E b> Nirspec Camera reference file information E ? ^ ++ E Keyword [17] has different values: E a> Dark reference file information E ? ^ - E b> Nirspec Collimator reference file information E ? ^^^^^^^^^^^^^^ ++ E Keyword [18] has different values: E a> Disperser reference file information E ? ^^^^ ^^^ E b> Dark reference file information E ? ^ ^ E Keyword [19] has different values: E a> Distortion reference file information E ? ^^ ^^^^ E b> Disperser reference file information E ? ^^ ^^^ E Keyword [20] has different values: E a> Filter Offset reference file information E ? ^ ^ ^ ------ E b> Distortion reference file information E ? ^ ^ ^ +++ E Keyword [21] has different values: E a> Flat reference file information E ? - E b> Filter Offset reference file information E ? + +++++++++ E Keyword [22] has different values: E a> DFlat reference file information E ? - E b> Flat reference file information E Keyword [23] has different values: E a> FFlat reference file information E ? ^ E b> DFlat reference file information E ? ^ E Keyword [24] has different values: E a> SFlat reference file information E ? ^ E b> FFlat reference file information E ? ^ E Keyword [25] has different values: E a> Nirspec FORE Model reference file information E ? ^^^^^^^^ -------- E b> SFlat reference file information E ? ^ ++ E Keyword [26] has different values: E a> Nirspec FPA Model reference file information E ? ^^ E b> Nirspec FORE Model reference file information E ? ^^^ E Keyword [27] has different values: E a> Gain reference file information E b> Nirspec FPA Model reference file information E Keyword [28] has different values: E a> IFU fore reference file information E ? ^^^^^^^^ E b> Gain reference file information E ? ^^^^ E Keyword [29] has different values: E a> IFU post reference file information E ? ^ ^^ E b> IFU fore reference file information E ? ^ ^^ E Keyword [30] has different values: E a> IFU slicer reference file information E ? ^^^^^ E b> IFU post reference file information E ? ++ ^ E Keyword [31] has different values: E a> Linearity reference file information E ? ^ ^ - --- E b> IFU slicer reference file information E ? ^^^^^^ ^ E Keyword [32] has different values: E a> Mask reference file information E ? ^ ^^ E b> Linearity reference file information E ? ^^^^ ^^^^ E Keyword [33] has different values: E a> Nirspec MSA Model reference file information E b> Mask reference file information E Keyword [34] has different values: E a> Nirspec OTE Model reference file information E ? ^^^ E b> Nirspec MSA Model reference file information E ? ^^^ E Keyword [35] has different values: E a> Pathloss reference file information E b> Nirspec OTE Model reference file information E Keyword [36] has different values: E a> Photometric reference file information E ? ^^^^^^^^ E b> Pathloss reference file information E ? ++ + ^^ E Keyword [37] has different values: E a> Read noise reference file information E ? ^ ^^^^^ ^^ E b> Photometric reference file information E ? ^^^^^^ ^^ ^ E Keyword [38] has different values: E a> Reference pixels reference file information E ? ^ ------------ E b> Read noise reference file information E ? ^^^^^^^ E Keyword [39] has different values: E a> Regions reference file information E ? ^ ^^ E b> Reference pixels reference file information E ? ^^^^^^^^^ ^^^ E Keyword [40] has different values: E a> Saturation reference file information E ? ^^^^^^^ E b> Regions reference file information E ? ^^^ + E Keyword [41] has different values: E a> Spectral distortion reference file information E ? ^^^ -------- E b> Saturation reference file information E ? ^ + E Keyword [42] has different values: E a> Superbias reference file information E ? - ^ - E b> Spectral distortion reference file information E ? ++ ^^^^ +++++++ E Keyword [43] has different values: E a> Wavelength Range reference file information E b> Superbias reference file information E Keyword [44] has different values: E a> Calibration step information E b> Wavelength Range reference file information E Keyword FILENAME has different values: E a> jwdata0010010_11010_0001_NRS1_photom.fits E b> jwdata0010010_11010_0001_NRS1_photomstep.fits E ? ++++ E Keyword GWA_XTIL has different comments: E a> Grating wheel tilt along instrmnt model Y axis E b> Grating Y tilt angle relative to mirror E Keyword GWA_YTIL has different comments: E a> Grating wheel tilt along instrmnt model X axis E b> Grating X tilt angle relative to mirror E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Headers have different number of cards: E a: 57 E b: 54 E Extra keyword 'EPH_TIME' in a: 0.0 E Extra keyword 'REFFRAME' in a: 'N/A' E Inconsistent duplicates of keyword '' : E Occurs 3 time(s) in a, 2 times in (b) E Keyword has different values: E a> JWST ephemeris information E b> Photometry information E Keyword [2] has different values: E a> Photometry information E b> WCS parameters E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63478a5910>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py:83: AssertionError -----------------------------Captured stderr setup------------------------------ 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210602:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 31681: invalid start byte" 202108210603:DEBUG:jwst.associations.association_io.load:Error unserializing: "'utf-8' codec can't decode byte 0xc0 in position 7105: invalid start byte" 2021-08-21 06:03:07,191 - stpipe.photom - INFO - PhotomStep instance created. 2021-08-21 06:03:07,191 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:03:07,191 - stpipe - INFO - OS: Linux 2021-08-21 06:03:07,377 - stpipe.photom - INFO - Step photom running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). 2021-08-21 06:03:07,378 - stpipe.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} 2021-08-21 06:03:09,961 - stpipe.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits 2021-08-21 06:03:09,961 - stpipe.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits 2021-08-21 06:03:12,962 - stpipe.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:03:12,962 - stpipe.photom - INFO - detector: NRS1 2021-08-21 06:03:12,962 - stpipe.photom - INFO - exp_type: NRS_IFU 2021-08-21 06:03:12,962 - stpipe.photom - INFO - filter: F290LP 2021-08-21 06:03:12,962 - stpipe.photom - INFO - grating: G395H 2021-08-21 06:03:13,014 - stpipe.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:04:21,937 - stpipe.photom - INFO - Saved model in jwdata0010010_11010_0001_NRS1_photom.fits 2021-08-21 06:04:21,937 - stpipe.photom - INFO - Step photom done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jwdata0010010_11010_0001_NRS1_pathloss.fits HTTP/1.1" 200 152130240 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.photom:step.py:321 PhotomStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.photom:step.py:367 Step photom running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits',). INFO stpipe.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0', 'inverse': False, 'source_type': None} DEBUG stpipe.photom:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.photom:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_spec2_run_photom0/jwdata0010010_11010_0001_NRS1_pathloss.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.photom:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.photom:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.photom:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.photom:photom_step.py:33 Input is IFUImageModel DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits INFO stpipe.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.photom:photom.py:142 detector: NRS1 INFO stpipe.photom:photom.py:142 detector: NRS1 INFO stpipe.photom:photom.py:143 exp_type: NRS_IFU INFO stpipe.photom:photom.py:143 exp_type: NRS_IFU INFO stpipe.photom:photom.py:145 filter: F290LP INFO stpipe.photom:photom.py:145 filter: F290LP INFO stpipe.photom:photom.py:149 grating: G395H INFO stpipe.photom:photom.py:149 grating: G395H DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:photom.py:268 Converting conversion factor from flux to surface brightness DEBUG stpipe.photom:photom.py:268 Converting conversion factor from flux to surface brightness INFO stpipe.photom:photom.py:274 PHOTMJSR value: 4.25452e+10 INFO stpipe.photom:photom.py:274 PHOTMJSR value: 4.25452e+10 DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0009.fits as <class 'jwst.datamodels.pixelarea.NirspecIfuAreaModel'> DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.photom:photom.py:619 Slice 0: 274 2047 780 830 DEBUG stpipe.photom:photom.py:619 Slice 0: 274 2047 780 830 DEBUG stpipe.photom:photom.py:619 Slice 1: 311 2047 1196 1248 DEBUG stpipe.photom:photom.py:619 Slice 1: 311 2047 1196 1248 DEBUG stpipe.photom:photom.py:619 Slice 2: 270 2047 730 781 DEBUG stpipe.photom:photom.py:619 Slice 2: 270 2047 730 781 DEBUG stpipe.photom:photom.py:619 Slice 3: 316 2047 1245 1297 DEBUG stpipe.photom:photom.py:619 Slice 3: 316 2047 1245 1297 DEBUG stpipe.photom:photom.py:619 Slice 4: 265 2047 681 732 DEBUG stpipe.photom:photom.py:619 Slice 4: 265 2047 681 732 DEBUG stpipe.photom:photom.py:619 Slice 5: 320 2047 1295 1346 DEBUG stpipe.photom:photom.py:619 Slice 5: 320 2047 1295 1346 DEBUG stpipe.photom:photom.py:619 Slice 6: 261 2047 632 682 DEBUG stpipe.photom:photom.py:619 Slice 6: 261 2047 632 682 DEBUG stpipe.photom:photom.py:619 Slice 7: 325 2047 1344 1395 DEBUG stpipe.photom:photom.py:619 Slice 7: 325 2047 1344 1395 DEBUG stpipe.photom:photom.py:619 Slice 8: 257 2047 583 633 DEBUG stpipe.photom:photom.py:619 Slice 8: 257 2047 583 633 DEBUG stpipe.photom:photom.py:619 Slice 9: 330 2047 1393 1445 DEBUG stpipe.photom:photom.py:619 Slice 9: 330 2047 1393 1445 DEBUG stpipe.photom:photom.py:619 Slice 10: 253 2047 533 584 DEBUG stpipe.photom:photom.py:619 Slice 10: 253 2047 533 584 DEBUG stpipe.photom:photom.py:619 Slice 11: 335 2047 1441 1494 DEBUG stpipe.photom:photom.py:619 Slice 11: 335 2047 1441 1494 DEBUG stpipe.photom:photom.py:619 Slice 12: 249 2047 484 534 DEBUG stpipe.photom:photom.py:619 Slice 12: 249 2047 484 534 DEBUG stpipe.photom:photom.py:619 Slice 13: 339 2047 1490 1543 DEBUG stpipe.photom:photom.py:619 Slice 13: 339 2047 1490 1543 DEBUG stpipe.photom:photom.py:619 Slice 14: 245 2047 435 485 DEBUG stpipe.photom:photom.py:619 Slice 14: 245 2047 435 485 DEBUG stpipe.photom:photom.py:619 Slice 15: 344 2047 1539 1592 DEBUG stpipe.photom:photom.py:619 Slice 15: 344 2047 1539 1592 DEBUG stpipe.photom:photom.py:619 Slice 16: 241 2047 385 436 DEBUG stpipe.photom:photom.py:619 Slice 16: 241 2047 385 436 DEBUG stpipe.photom:photom.py:619 Slice 17: 349 2047 1588 1641 DEBUG stpipe.photom:photom.py:619 Slice 17: 349 2047 1588 1641 DEBUG stpipe.photom:photom.py:619 Slice 18: 237 2047 336 387 DEBUG stpipe.photom:photom.py:619 Slice 18: 237 2047 336 387 DEBUG stpipe.photom:photom.py:619 Slice 19: 354 2047 1637 1690 DEBUG stpipe.photom:photom.py:619 Slice 19: 354 2047 1637 1690 DEBUG stpipe.photom:photom.py:619 Slice 20: 234 2047 287 337 DEBUG stpipe.photom:photom.py:619 Slice 20: 234 2047 287 337 DEBUG stpipe.photom:photom.py:619 Slice 21: 359 2047 1686 1739 DEBUG stpipe.photom:photom.py:619 Slice 21: 359 2047 1686 1739 DEBUG stpipe.photom:photom.py:619 Slice 22: 230 2047 237 288 DEBUG stpipe.photom:photom.py:619 Slice 22: 230 2047 237 288 DEBUG stpipe.photom:photom.py:619 Slice 23: 364 2047 1735 1789 DEBUG stpipe.photom:photom.py:619 Slice 23: 364 2047 1735 1789 DEBUG stpipe.photom:photom.py:619 Slice 24: 226 2047 188 238 DEBUG stpipe.photom:photom.py:619 Slice 24: 226 2047 188 238 DEBUG stpipe.photom:photom.py:619 Slice 25: 369 2047 1783 1838 DEBUG stpipe.photom:photom.py:619 Slice 25: 369 2047 1783 1838 DEBUG stpipe.photom:photom.py:619 Slice 26: 222 2047 139 189 DEBUG stpipe.photom:photom.py:619 Slice 26: 222 2047 139 189 DEBUG stpipe.photom:photom.py:619 Slice 27: 374 2047 1832 1887 DEBUG stpipe.photom:photom.py:619 Slice 27: 374 2047 1832 1887 DEBUG stpipe.photom:photom.py:619 Slice 28: 218 2047 89 139 DEBUG stpipe.photom:photom.py:619 Slice 28: 218 2047 89 139 DEBUG stpipe.photom:photom.py:619 Slice 29: 379 2047 1881 1936 DEBUG stpipe.photom:photom.py:619 Slice 29: 379 2047 1881 1936 INFO stpipe.photom:step.py:928 Saved model in jwdata0010010_11010_0001_NRS1_photom.fits INFO stpipe.photom:step.py:470 Step photom done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/jwdata0010010_11010_0001_NRS1_photom.fits HTTP/1.1" 200 152133120 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[extract_2d] | 0.28 | |
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run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSTRT2 has different values: E a> 918 E b> 919 E E Data contains differences: E Data differs at [1, 1]: E a> 7.8790336 E b> 7.895912 E Data differs at [2, 1]: E a> 7.1727624 E b> 7.138387 E Data differs at [3, 1]: E a> 7.1864924 E b> 7.7791295 E Data differs at [4, 1]: E a> 8.488396 E b> 8.30729 E Data differs at [5, 1]: E a> 8.091365 E b> 8.075245 E Data differs at [6, 1]: E a> 7.611582 E b> 7.285578 E Data differs at [7, 1]: E a> 7.6412067 E b> 7.6529727 E Data differs at [8, 1]: E a> 8.311155 E b> 8.707414 E Data differs at [9, 1]: E a> 7.9412 E b> 9.288069 E Data differs at [10, 1]: E a> 7.9953065 E b> 8.11928 E ... E 60297 different pixels found (99.76% different). E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [54, 1]: E a> 0 E b> 4 E Data differs at [91, 1]: E a> 0 E b> 4 E Data differs at [113, 1]: E a> 4 E b> 0 E Data differs at [134, 1]: E a> 0 E b> 4 E Data differs at [147, 1]: E a> 0 E b> 4 E Data differs at [157, 1]: E a> 0 E b> 4 E Data differs at [161, 1]: E a> 4 E b> 0 E Data differs at [192, 1]: E a> 0 E b> 4 E Data differs at [215, 1]: E a> 4 E b> 0 E Data differs at [236, 1]: E a> 0 E b> 4 E ... E 6325 different pixels found (10.46% different). E E Extension HDU 3 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.43525583 E b> 0.434676 E Data differs at [2, 1]: E a> 0.41344056 E b> 0.40850815 E Data differs at [3, 1]: E a> 0.42419714 E b> 0.45107073 E Data differs at [4, 1]: E a> 0.43999326 E b> 0.45117962 E Data differs at [5, 1]: E a> 0.41931367 E b> 0.4294056 E Data differs at [6, 1]: E a> 0.42927435 E b> 0.39980277 E Data differs at [7, 1]: E a> 0.42770875 E b> 0.40669695 E Data differs at [8, 1]: E a> 0.43864995 E b> 0.45259553 E Data differs at [9, 1]: E a> 0.41494167 E b> 0.533785 E Data differs at [10, 1]: E a> 0.46476573 E b> 0.43006828 E ... E 60299 different pixels found (99.76% different). E E Extension HDU 4 (WAVELENGTH, 1): E E Data contains differences: E Data differs at [1, 4]: E a> nan E b> 0.992814 E Data differs at [2, 4]: E a> nan E b> 0.9934496 E Data differs at [3, 4]: E a> nan E b> 0.9940852 E Data differs at [4, 4]: E a> nan E b> 0.9947208 E Data differs at [5, 4]: E a> nan E b> 0.9953564 E Data differs at [6, 4]: E a> nan E b> 0.99599195 E Data differs at [7, 4]: E a> nan E b> 0.99662757 E Data differs at [8, 4]: E a> nan E b> 0.99726313 E Data differs at [9, 4]: E a> nan E b> 0.9978987 E Data differs at [10, 4]: E a> nan E b> 0.99853426 E ... E 45612 different pixels found (75.46% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.12939285 E b> 0.13782738 E Data differs at [2, 1]: E a> 0.12229334 E b> 0.10630864 E Data differs at [3, 1]: E a> 0.1294325 E b> 0.12811598 E Data differs at [4, 1]: E a> 0.13293746 E b> 0.14354621 E Data differs at [5, 1]: E a> 0.11721945 E b> 0.12080387 E Data differs at [6, 1]: E a> 0.12068921 E b> 0.101559065 E Data differs at [7, 1]: E a> 0.12608178 E b> 0.105102286 E Data differs at [8, 1]: E a> 0.13768041 E b> 0.14537552 E Data differs at [9, 1]: E a> 0.12573494 E b> 0.17241931 E Data differs at [10, 1]: E a> 0.15676537 E b> 0.13223708 E ... E 60301 different pixels found (99.77% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.06005479 E b> 0.05111583 E Data differs at [2, 1]: E a> 0.048639752 E b> 0.060570274 E Data differs at [3, 1]: E a> 0.0505107 E b> 0.075348824 E Data differs at [4, 1]: E a> 0.060656607 E b> 0.060016852 E Data differs at [5, 1]: E a> 0.058604494 E b> 0.06358531 E Data differs at [6, 1]: E a> 0.06358726 E b> 0.058283202 E Data differs at [7, 1]: E a> 0.056852985 E b> 0.060300127 E Data differs at [8, 1]: E a> 0.05473337 E b> 0.0594672 E Data differs at [9, 1]: E a> 0.046441663 E b> 0.11250708 E Data differs at [10, 1]: E a> 0.059241798 E b> 0.052721653 E ... E 60304 different pixels found (99.77% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63687c9640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:48: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_extract_2d.fits HTTP/1.1" 200 1558080 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[flat_field] | 0.26 | |
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run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSTRT2 has different values: E a> 918 E b> 919 E E Data contains differences: E Data differs at [1, 1]: E a> 7.8790336 E b> 7.895912 E Data differs at [2, 1]: E a> 7.1727624 E b> 7.138387 E Data differs at [3, 1]: E a> 7.1864924 E b> 7.7791295 E Data differs at [4, 1]: E a> 8.488396 E b> 8.30729 E Data differs at [5, 1]: E a> 8.091365 E b> 8.075245 E Data differs at [6, 1]: E a> 7.611582 E b> 7.285578 E Data differs at [7, 1]: E a> 7.6412067 E b> 7.6529727 E Data differs at [8, 1]: E a> 8.311155 E b> 8.707414 E Data differs at [9, 1]: E a> 7.9412 E b> 9.288069 E Data differs at [10, 1]: E a> 7.9953065 E b> 8.11928 E ... E 60298 different pixels found (99.76% different). E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [54, 1]: E a> 1 E b> 5 E Data differs at [91, 1]: E a> 1 E b> 5 E Data differs at [113, 1]: E a> 5 E b> 1 E Data differs at [134, 1]: E a> 1 E b> 5 E Data differs at [147, 1]: E a> 1 E b> 5 E Data differs at [157, 1]: E a> 1 E b> 5 E Data differs at [161, 1]: E a> 5 E b> 1 E Data differs at [192, 1]: E a> 1 E b> 5 E Data differs at [215, 1]: E a> 5 E b> 1 E Data differs at [236, 1]: E a> 1 E b> 5 E ... E 8851 different pixels found (14.64% different). E E Extension HDU 3 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.43525583 E b> 0.434676 E Data differs at [2, 1]: E a> 0.41344056 E b> 0.40850815 E Data differs at [3, 1]: E a> 0.42419714 E b> 0.45107073 E Data differs at [4, 1]: E a> 0.43999326 E b> 0.45117962 E Data differs at [5, 1]: E a> 0.41931367 E b> 0.4294056 E Data differs at [6, 1]: E a> 0.42927435 E b> 0.39980277 E Data differs at [7, 1]: E a> 0.42770875 E b> 0.40669695 E Data differs at [8, 1]: E a> 0.43864995 E b> 0.45259553 E Data differs at [9, 1]: E a> 0.41494167 E b> 0.533785 E Data differs at [10, 1]: E a> 0.46476573 E b> 0.43006828 E ... E 60302 different pixels found (99.77% different). E E Extension HDU 4 (WAVELENGTH, 1): E E Data contains differences: E Data differs at [1, 4]: E a> nan E b> 0.992814 E Data differs at [2, 4]: E a> nan E b> 0.9934496 E Data differs at [3, 4]: E a> nan E b> 0.9940852 E Data differs at [4, 4]: E a> nan E b> 0.9947208 E Data differs at [5, 4]: E a> nan E b> 0.9953564 E Data differs at [6, 4]: E a> nan E b> 0.99599195 E Data differs at [7, 4]: E a> nan E b> 0.99662757 E Data differs at [8, 4]: E a> nan E b> 0.99726313 E Data differs at [9, 4]: E a> nan E b> 0.9978987 E Data differs at [10, 4]: E a> nan E b> 0.99853426 E ... E 45612 different pixels found (75.46% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.12939285 E b> 0.13782738 E Data differs at [2, 1]: E a> 0.12229334 E b> 0.10630864 E Data differs at [3, 1]: E a> 0.1294325 E b> 0.12811598 E Data differs at [4, 1]: E a> 0.13293746 E b> 0.14354621 E Data differs at [5, 1]: E a> 0.11721945 E b> 0.12080387 E Data differs at [6, 1]: E a> 0.12068921 E b> 0.101559065 E Data differs at [7, 1]: E a> 0.12608178 E b> 0.105102286 E Data differs at [8, 1]: E a> 0.13768041 E b> 0.14537552 E Data differs at [9, 1]: E a> 0.12573494 E b> 0.17241931 E Data differs at [10, 1]: E a> 0.15676537 E b> 0.13223708 E ... E 60305 different pixels found (99.77% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.06005479 E b> 0.05111583 E Data differs at [2, 1]: E a> 0.048639752 E b> 0.060570274 E Data differs at [3, 1]: E a> 0.0505107 E b> 0.075348824 E Data differs at [4, 1]: E a> 0.060656607 E b> 0.060016852 E Data differs at [5, 1]: E a> 0.058604494 E b> 0.06358531 E Data differs at [6, 1]: E a> 0.06358726 E b> 0.058283202 E Data differs at [7, 1]: E a> 0.056852985 E b> 0.060300127 E Data differs at [8, 1]: E a> 0.05473337 E b> 0.0594672 E Data differs at [9, 1]: E a> 0.046441663 E b> 0.11250708 E Data differs at [10, 1]: E a> 0.059241798 E b> 0.052721653 E ... E 60301 different pixels found (99.77% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636912fb20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:48: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_flat_field.fits HTTP/1.1" 200 1805760 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[cal] | 0.33 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "extract_2d", "flat_field", "cal"]) def test_nirspec_lamp_fs_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in Fixed-Slit mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/truth/jw84600010001_02101_00004_nrs2_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSTRT2 has different values: E a> 918 E b> 919 E E Data contains differences: E Data differs at [1, 1]: E a> 7.8790336 E b> 7.895912 E Data differs at [2, 1]: E a> 7.1727624 E b> 7.138387 E Data differs at [3, 1]: E a> 7.1864924 E b> 7.7791295 E Data differs at [4, 1]: E a> 8.488396 E b> 8.30729 E Data differs at [5, 1]: E a> 8.091365 E b> 8.075245 E Data differs at [6, 1]: E a> 7.611582 E b> 7.285578 E Data differs at [7, 1]: E a> 7.6412067 E b> 7.6529727 E Data differs at [8, 1]: E a> 8.311155 E b> 8.707414 E Data differs at [9, 1]: E a> 7.9412 E b> 9.288069 E Data differs at [10, 1]: E a> 7.9953065 E b> 8.11928 E ... E 60298 different pixels found (99.76% different). E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [54, 1]: E a> 1 E b> 5 E Data differs at [91, 1]: E a> 1 E b> 5 E Data differs at [113, 1]: E a> 5 E b> 1 E Data differs at [134, 1]: E a> 1 E b> 5 E Data differs at [147, 1]: E a> 1 E b> 5 E Data differs at [157, 1]: E a> 1 E b> 5 E Data differs at [161, 1]: E a> 5 E b> 1 E Data differs at [192, 1]: E a> 1 E b> 5 E Data differs at [215, 1]: E a> 5 E b> 1 E Data differs at [236, 1]: E a> 1 E b> 5 E ... E 8851 different pixels found (14.64% different). E E Extension HDU 3 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.43525583 E b> 0.434676 E Data differs at [2, 1]: E a> 0.41344056 E b> 0.40850815 E Data differs at [3, 1]: E a> 0.42419714 E b> 0.45107073 E Data differs at [4, 1]: E a> 0.43999326 E b> 0.45117962 E Data differs at [5, 1]: E a> 0.41931367 E b> 0.4294056 E Data differs at [6, 1]: E a> 0.42927435 E b> 0.39980277 E Data differs at [7, 1]: E a> 0.42770875 E b> 0.40669695 E Data differs at [8, 1]: E a> 0.43864995 E b> 0.45259553 E Data differs at [9, 1]: E a> 0.41494167 E b> 0.533785 E Data differs at [10, 1]: E a> 0.46476573 E b> 0.43006828 E ... E 60302 different pixels found (99.77% different). E E Extension HDU 4 (WAVELENGTH, 1): E E Data contains differences: E Data differs at [1, 4]: E a> nan E b> 0.992814 E Data differs at [2, 4]: E a> nan E b> 0.9934496 E Data differs at [3, 4]: E a> nan E b> 0.9940852 E Data differs at [4, 4]: E a> nan E b> 0.9947208 E Data differs at [5, 4]: E a> nan E b> 0.9953564 E Data differs at [6, 4]: E a> nan E b> 0.99599195 E Data differs at [7, 4]: E a> nan E b> 0.99662757 E Data differs at [8, 4]: E a> nan E b> 0.99726313 E Data differs at [9, 4]: E a> nan E b> 0.9978987 E Data differs at [10, 4]: E a> nan E b> 0.99853426 E ... E 45612 different pixels found (75.46% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.12939285 E b> 0.13782738 E Data differs at [2, 1]: E a> 0.12229334 E b> 0.10630864 E Data differs at [3, 1]: E a> 0.1294325 E b> 0.12811598 E Data differs at [4, 1]: E a> 0.13293746 E b> 0.14354621 E Data differs at [5, 1]: E a> 0.11721945 E b> 0.12080387 E Data differs at [6, 1]: E a> 0.12068921 E b> 0.101559065 E Data differs at [7, 1]: E a> 0.12608178 E b> 0.105102286 E Data differs at [8, 1]: E a> 0.13768041 E b> 0.14537552 E Data differs at [9, 1]: E a> 0.12573494 E b> 0.17241931 E Data differs at [10, 1]: E a> 0.15676537 E b> 0.13223708 E ... E 60305 different pixels found (99.77% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> 0.06005479 E b> 0.05111583 E Data differs at [2, 1]: E a> 0.048639752 E b> 0.060570274 E Data differs at [3, 1]: E a> 0.0505107 E b> 0.075348824 E Data differs at [4, 1]: E a> 0.060656607 E b> 0.060016852 E Data differs at [5, 1]: E a> 0.058604494 E b> 0.06358531 E Data differs at [6, 1]: E a> 0.06358726 E b> 0.058283202 E Data differs at [7, 1]: E a> 0.056852985 E b> 0.060300127 E Data differs at [8, 1]: E a> 0.05473337 E b> 0.0594672 E Data differs at [9, 1]: E a> 0.046441663 E b> 0.11250708 E Data differs at [10, 1]: E a> 0.059241798 E b> 0.052721653 E ... E 60301 different pixels found (99.77% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63688f0f70>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py:48: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_cal.fits HTTP/1.1" 200 1805760 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[assign_wcs] | 359.38 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'assign_wcs' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_assign_wcs.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_assign_wcs.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308687580>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError -----------------------------Captured stderr setup------------------------------ 2021-08-21 06:07:25,008 - stpipe - INFO - PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0006.asdf 2021-08-21 06:07:25,040 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:07:25,040 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:07:25,042 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:07:25,042 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:07:25,043 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:07:25,044 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:07:25,046 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:07:25,047 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:07:25,048 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:07:25,048 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:07:25,049 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:07:25,050 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:07:25,050 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:07:25,051 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:07:25,052 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:07:25,053 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:07:25,053 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:07:25,054 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:07:25,055 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:07:25,056 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:07:25,057 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:07:25,058 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:07:25,058 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:07:25,058 - stpipe - INFO - OS: Linux 2021-08-21 06:07:25,199 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits',). 2021-08-21 06:07:25,211 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:07:25,361 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00005_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'specwcs', 'wavelengthrange'] 2021-08-21 06:07:25,369 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:07:25,370 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:07:25,371 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:07:25,372 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:07:25,373 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:07:25,373 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'. 2021-08-21 06:07:25,373 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:07:25,374 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:07:25,374 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'. 2021-08-21 06:07:25,374 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:07:25,375 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. 2021-08-21 06:07:25,376 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. 2021-08-21 06:07:25,377 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. 2021-08-21 06:07:25,379 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:07:25,379 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:07:25,381 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:07:25,382 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:07:25,383 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 2021-08-21 06:07:25,383 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits ... 2021-08-21 06:07:25,714 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_rate.fits>,). 2021-08-21 06:07:25,715 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:07:25,893 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:07:25,893 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3161331710000003 deg 2021-08-21 06:07:25,894 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200584613 deg 2021-08-21 06:07:25,894 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:07:25,903 - stpipe.Spec2Pipeline.assign_wcs - INFO - Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2021-08-21 06:07:25,959 - stpipe.Spec2Pipeline.assign_wcs - INFO - Applied Barycentric velocity correction : 0.9999953090767777 2021-08-21 06:07:29,303 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2021-08-21 06:07:30,399 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:07:32,309 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw00626030001_02103_00005_nrs1_assign_wcs.fits 2021-08-21 06:07:32,309 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:07:32,704 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). 2021-08-21 06:07:32,705 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:07:32,705 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:07:32,707 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:07:33,076 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). 2021-08-21 06:07:33,077 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:33,078 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:07:33,079 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:07:33,455 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>,). 2021-08-21 06:07:33,456 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:33,478 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2021-08-21 06:07:33,479 - stpipe.JwstStep - INFO - JwstStep instance created. 2021-08-21 06:07:33,628 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:07:33,629 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.3161331710000003 deg 2021-08-21 06:07:33,629 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.005914304200584613 deg 2021-08-21 06:07:33,630 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2021-08-21 06:07:33,639 - stpipe.Spec2Pipeline.msa_flagging - INFO - Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2021-08-21 06:07:33,639 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:07:33,733 - stpipe.Spec2Pipeline.msa_flagging - INFO - Applied Barycentric velocity correction : 0.9999953090767777 2021-08-21 06:07:33,764 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2021-08-21 06:07:33,810 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2021-08-21 06:07:33,839 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2021-08-21 06:07:33,920 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2021-08-21 06:07:33,949 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:07:49,342 - stpipe.Spec2Pipeline.msa_flagging - INFO - Saved model in jw00626030001_02103_00005_nrs1_msa_flagging.fits 2021-08-21 06:07:49,343 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:07:49,536 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:49,537 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:07:49,537 - stpipe.Spec2Pipeline.extract_2d - INFO - Step skipped. 2021-08-21 06:07:49,538 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:07:49,717 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:49,718 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:49,718 - stpipe.Spec2Pipeline.srctype - INFO - Step skipped. 2021-08-21 06:07:49,719 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:07:49,893 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:49,896 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:07:49,897 - stpipe.Spec2Pipeline.master_background - INFO - Step skipped. 2021-08-21 06:07:49,897 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:07:50,074 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:50,075 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} 2021-08-21 06:07:50,075 - stpipe.Spec2Pipeline.wavecorr - INFO - Step skipped. 2021-08-21 06:07:50,076 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:07:50,256 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). 2021-08-21 06:07:50,257 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:13:17,427 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw00626030001_02103_00005_nrs1_flat_field.fits 2021-08-21 06:13:17,427 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:13:17,756 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2021-08-21 06:13:17,757 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:13:17,757 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped. 2021-08-21 06:13:17,758 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:13:18,073 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2021-08-21 06:13:18,074 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:13:18,074 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2021-08-21 06:13:18,075 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:13:18,387 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). 2021-08-21 06:13:18,388 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:13:18,388 - stpipe.Spec2Pipeline.photom - INFO - Step skipped. 2021-08-21 06:13:18,389 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:13:18,733 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). 2021-08-21 06:13:18,736 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'multi', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': True} 2021-08-21 06:13:18,736 - stpipe.Spec2Pipeline.cube_build - INFO - Step skipped. 2021-08-21 06:13:18,737 - stpipe.Spec2Pipeline.cube_build - INFO - Step cube_build done 2021-08-21 06:13:18,965 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). 2021-08-21 06:13:18,967 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:13:18,967 - stpipe.Spec2Pipeline.extract_1d - INFO - Step skipped. 2021-08-21 06:13:18,968 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:13:18,968 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 2021-08-21 06:13:18,968 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:13:20,864 - stpipe.Spec2Pipeline - INFO - Saved model in jw00626030001_02103_00005_nrs1_cal.fits 2021-08-21 06:13:20,864 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw00626030001_02103_00005_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS INFO stpipe:pipeline.py:179 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0006.asdf INFO stpipe:pipeline.py:179 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0006.asdf INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw00626030001_02103_00005_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'specwcs', 'wavelengthrange'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:913 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:913 Applied Barycentric velocity correction : 0.9999953090767777 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:25 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:321 JwstStep instance created. DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.3161331710000003 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200584613 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:776 Combination REF_G235M missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1005 Applied Barycentric velocity correction : 0.9999953090767777 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1005 Applied Barycentric velocity correction : 0.9999953090767777 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_msa_flagging.fits INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} INFO stpipe.Spec2Pipeline.extract_2d:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.srctype:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.wavecorr:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is IFUImageModel of exposure type NRS_AUTOWAVE DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FFLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type SFLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 95 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 95 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 92 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 92 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 96 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 96 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 171 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 171 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 64 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 64 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 117 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 117 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 115 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 115 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 54 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 54 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 125 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 125 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 41 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 41 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 90 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 90 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 43 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 43 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 98 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 98 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 49 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 49 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 123 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 47 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 47 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 100 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 100 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 55 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 55 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 111 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 111 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 40 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 40 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 85 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 85 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 50 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 50 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 39 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 83 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1664 Using ifu_wcs.bounding_box. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1723 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.photom:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.cube_build:step.py:367 Step cube_build running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.cube_build:step.py:371 Step cube_build parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'multi', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': True} INFO stpipe.Spec2Pipeline.cube_build:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.cube_build:step.py:470 Step cube_build done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<IFUImageModel(2048, 2048) from jw00626030001_02103_00005_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} INFO stpipe.Spec2Pipeline.extract_1d:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw00626030001_02103_00005_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_assign_wcs.fits HTTP/1.1" 200 84980160 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[msa_flagging] | 1.84 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'msa_flagging' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_msa_flagging.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_msa_flagging.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63687df370>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_msa_flagging.fits HTTP/1.1" 200 84980160 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[flat_field] | 1.88 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ts', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [145, 85]: E a> 1 E b> 0 E Data differs at [146, 85]: E a> 1 E b> 0 E Data differs at [147, 85]: E a> 1 E b> 0 E Data differs at [148, 85]: E a> 1 E b> 0 E Data differs at [149, 85]: E a> 3 E b> 2 E Data differs at [150, 85]: E a> 1 E b> 0 E Data differs at [151, 85]: E a> 1 E b> 0 E Data differs at [152, 85]: E a> 1 E b> 0 E Data differs at [153, 85]: E a> 1 E b> 0 E Data differs at [154, 85]: E a> 1 E b> 0 E ... E 6425 different pixels found (0.15% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63687df310>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_flat_field.fits HTTP/1.1" 200 101761920 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py::test_nirspec_lamp_ifu_spec2[cal] | 1.88 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "flat_field", "cal"]) def test_nirspec_lamp_ifu_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec lamp exposure in IFU mode.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = replace_suffix( os.path.splitext(os.path.basename(rtdata.input))[0], suffix) + '.fits' rtdata.output = output # Get the truth files rtdata.get_truth(os.path.join("truth/test_nirspec_lamp_spec2", output)) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/jw00626030001_02103_00005_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_ifu_spec2_rtdata_module0/truth/jw00626030001_02103_00005_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [145, 85]: E a> 1 E b> 0 E Data differs at [146, 85]: E a> 1 E b> 0 E Data differs at [147, 85]: E a> 1 E b> 0 E Data differs at [148, 85]: E a> 1 E b> 0 E Data differs at [149, 85]: E a> 3 E b> 2 E Data differs at [150, 85]: E a> 1 E b> 0 E Data differs at [151, 85]: E a> 1 E b> 0 E Data differs at [152, 85]: E a> 1 E b> 0 E Data differs at [153, 85]: E a> 1 E b> 0 E Data differs at [154, 85]: E a> 1 E b> 0 E ... E 6425 different pixels found (0.15% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368f49040>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_ifu_spec2.py:48: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw00626030001_02103_00005_nrs1_cal.fits HTTP/1.1" 200 101761920 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[cal] | 130.89 | |
|
suffix = 'cal' run_spec2_mbkg = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...th_bkgslits_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 'masterbg1d', 'masterbg2d'] ) def test_nirspec_mos_mbkg(suffix, run_spec2_mbkg, fitsdiff_default_kwargs): """Run spec2 with master background""" rtdata = run_spec2_mbkg > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/nrs_mos_with_bkgslits_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E Keyword SLTSIZE2 has different values: E a> 25 E b> 19 E Keyword SLTSTRT2 has different values: E a> 1183 E ? ^ E b> 1184 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 10 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 11 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1423 E ? ^ E b> 1424 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 12 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 13 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 14 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 15 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 16 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 17 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 18 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 19 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 20 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 21 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1843 E ? ^ E b> 1844 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 22 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 23 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 24 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 25 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 29 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 30 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 31 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 1706 E ? ^ E b> 1707 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 32 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 33 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 34 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 35 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 36 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 37 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 38 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 39 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 40 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 41 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1793 E ? ^ E b> 1794 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 42 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 43 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 44 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 45 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 46 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 47 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 48 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 49 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 50 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 51 (SCI, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1303 E ? ^ E b> 1304 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 52 (DQ, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 53 (ERR, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 54 (WAVELENGTH, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 55 (BARSHADOW, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 56 (VAR_POISSON, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 57 (VAR_RNOISE, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 58 (VAR_FLAT, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 59 (PATHLOSS_PS, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 60 (PATHLOSS_UN, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 61 (SCI, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1887 E ? ^ E b> 1888 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 62 (DQ, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 63 (ERR, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 64 (WAVELENGTH, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 65 (BARSHADOW, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 66 (VAR_POISSON, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 67 (VAR_RNOISE, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 68 (VAR_FLAT, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 69 (PATHLOSS_PS, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 70 (PATHLOSS_UN, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 71 (SCI, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1922 E ? ^ E b> 1923 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 72 (DQ, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 73 (ERR, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 74 (WAVELENGTH, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 75 (BARSHADOW, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 76 (VAR_POISSON, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 77 (VAR_RNOISE, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 78 (VAR_FLAT, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 79 (PATHLOSS_PS, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 80 (PATHLOSS_UN, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308463fd0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:100: AssertionError -----------------------------Captured stderr setup------------------------------ 2021-08-21 06:15:58,099 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:15:58,100 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:15:58,101 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:15:58,102 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:15:58,102 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:15:58,103 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:15:58,106 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:15:58,107 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:15:58,107 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:15:58,108 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:15:58,109 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:15:58,109 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:15:58,110 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:15:58,111 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:15:58,112 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:15:58,112 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:15:58,113 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:15:58,114 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:15:58,114 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:15:58,115 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:15:58,117 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:15:58,117 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:15:58,118 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:15:58,118 - stpipe - INFO - OS: Linux 2021-08-21 06:15:58,831 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits',). 2021-08-21 06:15:58,843 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:15:58,993 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'nrs_mos_with_bkgslits_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:15:59,008 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 06:15:59,009 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 06:15:59,009 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 06:15:59,010 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:15:59,011 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:15:59,013 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:15:59,013 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:15:59,013 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:15:59,014 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:15:59,015 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:15:59,015 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 06:15:59,016 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 06:15:59,017 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:15:59,017 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:15:59,017 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 06:15:59,019 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:15:59,020 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:15:59,021 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:15:59,022 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:15:59,024 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:15:59,025 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 06:15:59,026 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 06:15:59,026 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:15:59,027 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:15:59,027 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 06:15:59,028 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:15:59,028 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 06:15:59,030 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:15:59,031 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:15:59,031 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:15:59,032 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits 2021-08-21 06:15:59,032 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits ... 2021-08-21 06:15:59,312 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:15:59,313 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:15:59,467 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 2021-08-21 06:15:59,471 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 5 is background only; assigned source_id = 36 2021-08-21 06:15:59,472 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 6 is background only; assigned source_id = 37 2021-08-21 06:15:59,475 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 10 is background only; assigned source_id = 38 2021-08-21 06:15:59,478 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 16 is background only; assigned source_id = 39 2021-08-21 06:15:59,509 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.0 deg 2021-08-21 06:15:59,509 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.0 deg 2021-08-21 06:15:59,510 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.3763368051194907 deg 2021-08-21 06:15:59,510 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:15:59,794 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] 2021-08-21 06:15:59,795 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 8 open slitlets 2021-08-21 06:15:59,822 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.0 deg 2021-08-21 06:15:59,822 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.0 deg 2021-08-21 06:15:59,822 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.3763368051194907 deg 2021-08-21 06:15:59,823 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:15:59,832 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:15:59,949 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 1 2021-08-21 06:15:59,958 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:15:59,958 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 7 open slits in quadrant 3 2021-08-21 06:16:00,014 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2021-08-21 06:16:00,014 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:16:00,138 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} 2021-08-21 06:16:00,486 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:16:00,492 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:16:00,611 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). 2021-08-21 06:16:00,612 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:16:00,612 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:16:00,613 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:16:00,719 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). 2021-08-21 06:16:00,720 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:16:00,720 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:16:00,721 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:16:00,826 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:00,827 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:16:00,843 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2021-08-21 06:16:00,844 - stpipe.JwstStep - INFO - JwstStep instance created. 2021-08-21 06:16:00,961 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.0 deg 2021-08-21 06:16:00,961 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.0 deg 2021-08-21 06:16:00,961 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.3763368051194907 deg 2021-08-21 06:16:00,962 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2021-08-21 06:16:00,973 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:16:01,091 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2021-08-21 06:16:01,131 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2021-08-21 06:16:01,155 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2021-08-21 06:16:01,227 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2021-08-21 06:16:01,251 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:16:12,952 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:16:13,170 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:13,171 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:16:13,189 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2021-08-21 06:16:13,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 6 2021-08-21 06:16:13,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1773 2048 2021-08-21 06:16:13,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1182 1207 2021-08-21 06:16:13,533 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:13,542 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 2021-08-21 06:16:13,543 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 2021-08-21 06:16:13,757 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 3 2021-08-21 06:16:13,758 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1206 2048 2021-08-21 06:16:13,758 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1422 1445 2021-08-21 06:16:14,043 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:14,052 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 2021-08-21 06:16:14,053 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 2021-08-21 06:16:14,258 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 4 2021-08-21 06:16:14,258 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1267 2048 2021-08-21 06:16:14,258 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1842 1865 2021-08-21 06:16:14,397 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:14,406 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 2021-08-21 06:16:14,407 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 2021-08-21 06:16:14,610 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 5 2021-08-21 06:16:14,610 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 769 2048 2021-08-21 06:16:14,611 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1705 1733 2021-08-21 06:16:14,776 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:14,785 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 2021-08-21 06:16:14,785 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 2021-08-21 06:16:15,160 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 8 2021-08-21 06:16:15,160 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1407 2048 2021-08-21 06:16:15,160 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1792 1815 2021-08-21 06:16:15,290 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:15,299 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 2021-08-21 06:16:15,299 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 2021-08-21 06:16:15,500 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2021-08-21 06:16:15,500 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1266 2048 2021-08-21 06:16:15,500 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1302 1325 2021-08-21 06:16:15,633 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:15,641 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 2021-08-21 06:16:15,641 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 2021-08-21 06:16:16,025 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 14 2021-08-21 06:16:16,025 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1070 2048 2021-08-21 06:16:16,025 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1886 1911 2021-08-21 06:16:16,164 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:16,172 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 2021-08-21 06:16:16,172 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 2021-08-21 06:16:16,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 16 2021-08-21 06:16:16,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1036 2048 2021-08-21 06:16:16,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1921 1946 2021-08-21 06:16:16,509 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:16:16,517 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 2021-08-21 06:16:16,517 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 2021-08-21 06:16:16,782 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:16:16,978 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:16,979 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:16:16,986 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2021-08-21 06:16:16,986 - stpipe.Spec2Pipeline.srctype - INFO - source_id=37, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,987 - stpipe.Spec2Pipeline.srctype - INFO - source_id=35, stellarity=0.9200, type=POINT 2021-08-21 06:16:16,987 - stpipe.Spec2Pipeline.srctype - INFO - source_id=29, stellarity=0.1500, type=EXTENDED 2021-08-21 06:16:16,987 - stpipe.Spec2Pipeline.srctype - INFO - source_id=36, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,988 - stpipe.Spec2Pipeline.srctype - INFO - source_id=15, stellarity=0.8200, type=POINT 2021-08-21 06:16:16,988 - stpipe.Spec2Pipeline.srctype - INFO - source_id=38, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,989 - stpipe.Spec2Pipeline.srctype - INFO - source_id=6, stellarity=0.4800, type=EXTENDED 2021-08-21 06:16:16,989 - stpipe.Spec2Pipeline.srctype - INFO - source_id=39, stellarity=0.0000, type=EXTENDED 2021-08-21 06:16:16,990 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:16:17,149 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:17,152 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:16:17,159 - stpipe.Spec2Pipeline.master_background - INFO - Calculating master background 2021-08-21 06:16:17,322 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:17,323 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:16:25,976 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 6 2021-08-21 06:16:27,165 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 3 2021-08-21 06:16:30,661 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 4 2021-08-21 06:16:33,883 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 5 2021-08-21 06:16:39,098 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:16:41,742 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:16:45,005 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 14 2021-08-21 06:16:48,934 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 16 2021-08-21 06:16:52,918 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:16:53,325 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:53,326 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:16:53,363 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:16:53,400 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:16:54,729 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:16:54,744 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:16:54,759 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:16:54,773 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:16:54,790 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:16:54,808 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:16:54,822 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 6 2021-08-21 06:16:54,837 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 7 2021-08-21 06:16:54,854 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:16:55,114 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:55,115 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:16:55,145 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:16:56,552 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 6 2021-08-21 06:16:56,605 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 3 2021-08-21 06:16:56,718 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 4 2021-08-21 06:16:56,828 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 5 2021-08-21 06:16:57,006 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:16:57,099 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:16:57,209 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 14 2021-08-21 06:16:57,343 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 16 2021-08-21 06:16:57,482 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:16:57,805 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:57,807 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:16:57,860 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:16:57,861 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:16:59,243 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:16:59,299 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 6 2021-08-21 06:16:59,299 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,304 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 3 2021-08-21 06:16:59,304 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,310 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 4 2021-08-21 06:16:59,310 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,315 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 5 2021-08-21 06:16:59,315 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,321 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:16:59,321 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,326 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:16:59,326 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,331 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 14 2021-08-21 06:16:59,332 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,337 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 16 2021-08-21 06:16:59,337 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:16:59,345 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:16:59,345 - stpipe.Spec2Pipeline.master_background - INFO - Creating MOS master background from background slitlets 2021-08-21 06:16:59,360 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_6 2021-08-21 06:16:59,360 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_5 2021-08-21 06:16:59,361 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_10 2021-08-21 06:16:59,361 - stpipe.Spec2Pipeline.master_background - INFO - Using background slitlet background_16 2021-08-21 06:16:59,494 - stpipe.Spec2Pipeline.master_background - INFO - Applying resampling and 1D extraction to background slits 2021-08-21 06:16:59,510 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2021-08-21 06:16:59,829 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:16:59,830 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:16:59,860 - stpipe.ResampleSpecStep - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: pixfrac=1.0 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: kernel='square' 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: fillval='INDEF' 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: weight_type='ivm' 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - setting: pscale_ratio=1.0 2021-08-21 06:16:59,861 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits 2021-08-21 06:17:00,401 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:00,427 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,429 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:00,454 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,457 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:00,481 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,485 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:00,510 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:00,521 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 2021-08-21 06:17:00,718 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:00,769 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,780 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:00,832 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,844 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:00,893 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,905 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:00,955 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:00,980 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 2021-08-21 06:17:01,129 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:01,163 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,169 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:01,203 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,211 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:01,243 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,251 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:01,285 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:01,304 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 2021-08-21 06:17:01,474 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:17:01,514 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,522 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:17:01,562 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,572 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:17:01,613 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,622 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:17:01,665 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:01,687 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 2021-08-21 06:17:01,697 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2021-08-21 06:17:01,714 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2021-08-21 06:17:02,015 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:02,017 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:17:02,041 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:17:02,059 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:17:02,097 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:17:02,097 - stpipe.Extract1dStep - INFO - Working on slit 6 2021-08-21 06:17:02,097 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,101 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,102 - stpipe.Extract1dStep - INFO - xstart=0, xstop=274, ystart=3.5, ystop=10.5 2021-08-21 06:17:02,176 - stpipe.Extract1dStep - INFO - Working on slit 5 2021-08-21 06:17:02,176 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,184 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,185 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1278, ystart=3.5, ystop=10.5 2021-08-21 06:17:02,407 - stpipe.Extract1dStep - INFO - Working on slit 10 2021-08-21 06:17:02,407 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,413 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,414 - stpipe.Extract1dStep - INFO - xstart=0, xstop=781, ystart=3.5, ystop=10.5 2021-08-21 06:17:02,561 - stpipe.Extract1dStep - INFO - Working on slit 16 2021-08-21 06:17:02,561 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:17:02,568 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:17:02,568 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1011, ystart=3.0, ystop=10.0 2021-08-21 06:17:02,749 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2021-08-21 06:17:02,749 - stpipe.Spec2Pipeline.master_background - INFO - Combining 1D background spectra into master background 2021-08-21 06:17:02,749 - stpipe.Spec2Pipeline.master_background - INFO - Using exposure time as the weight. 2021-08-21 06:17:02,826 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 1 2021-08-21 06:17:02,828 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 2 2021-08-21 06:17:02,835 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 3 2021-08-21 06:17:02,840 - stpipe.Spec2Pipeline.master_background - INFO - Accumulating data from input spectrum 4 2021-08-21 06:17:02,845 - stpipe.Spec2Pipeline.master_background - WARNING - 2 output pixel numbers were NaN 2021-08-21 06:17:02,846 - stpipe.Spec2Pipeline.master_background - WARNING - 1 elements of output had no corresponding input data; 2021-08-21 06:17:02,846 - stpipe.Spec2Pipeline.master_background - WARNING - these elements will be omitted. 2021-08-21 06:17:02,889 - stpipe.Spec2Pipeline.master_background - INFO - Interpolating 1D master background to all MOS 2D slitlets 2021-08-21 06:17:04,300 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 6 2021-08-21 06:17:04,301 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 3 2021-08-21 06:17:04,302 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 4 2021-08-21 06:17:04,302 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 5 2021-08-21 06:17:04,303 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 8 2021-08-21 06:17:04,303 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 10 2021-08-21 06:17:04,304 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 14 2021-08-21 06:17:04,304 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 16 2021-08-21 06:17:04,608 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:04,609 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:17:04,616 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:17:04,616 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:17:04,616 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:17:05,682 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:17:05,740 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 6 2021-08-21 06:17:05,740 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,745 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 3 2021-08-21 06:17:05,746 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,751 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 4 2021-08-21 06:17:05,751 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,756 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 5 2021-08-21 06:17:05,756 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:17:05,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,767 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:17:05,767 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,772 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 14 2021-08-21 06:17:05,772 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,778 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 16 2021-08-21 06:17:05,778 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:05,784 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:17:06,142 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:06,144 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:17:07,244 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 6 2021-08-21 06:17:07,247 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 3 2021-08-21 06:17:07,251 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 4 2021-08-21 06:17:07,255 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 5 2021-08-21 06:17:07,258 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:17:07,262 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:17:07,265 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 14 2021-08-21 06:17:07,269 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 16 2021-08-21 06:17:07,274 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:17:07,624 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:07,625 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:17:07,632 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:17:08,723 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:17:08,728 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:17:08,732 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:17:08,736 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:17:08,740 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:17:08,745 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:17:08,749 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 6 2021-08-21 06:17:08,754 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 7 2021-08-21 06:17:08,759 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:17:09,181 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:09,183 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:17:09,190 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_rate.fits> 2021-08-21 06:17:10,283 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 6 2021-08-21 06:17:10,287 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 3 2021-08-21 06:17:10,290 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 4 2021-08-21 06:17:10,294 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 5 2021-08-21 06:17:10,297 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:17:10,300 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:17:10,303 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 14 2021-08-21 06:17:10,307 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 16 2021-08-21 06:17:10,312 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:17:10,317 - stpipe.Spec2Pipeline.master_background - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:17:11,973 - stpipe.Spec2Pipeline.master_background - INFO - Saved model in nrs_mos_with_bkgslits_masterbg1d.fits 2021-08-21 06:17:13,832 - stpipe.Spec2Pipeline.master_background - INFO - Saved model in nrs_mos_with_bkgslits_masterbg2d.fits 2021-08-21 06:17:13,833 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:17:14,223 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:14,224 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:17:14,256 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf 2021-08-21 06:17:15,350 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 6 2021-08-21 06:17:15,350 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 3 2021-08-21 06:17:15,428 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:17:15,431 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 4 2021-08-21 06:17:15,431 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 5 2021-08-21 06:17:15,431 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 8 2021-08-21 06:17:15,498 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:17:15,501 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 10 2021-08-21 06:17:15,501 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 14 2021-08-21 06:17:15,501 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 16 2021-08-21 06:17:15,503 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:17:15,891 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:15,893 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:17:24,092 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 6 2021-08-21 06:17:25,164 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 3 2021-08-21 06:17:28,296 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 4 2021-08-21 06:17:31,583 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 5 2021-08-21 06:17:36,353 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 8 2021-08-21 06:17:38,735 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2021-08-21 06:17:41,587 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 14 2021-08-21 06:17:45,200 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 16 2021-08-21 06:17:49,144 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:17:49,703 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:49,706 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:17:49,736 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:17:49,775 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:17:50,900 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2021-08-21 06:17:50,915 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2021-08-21 06:17:50,930 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2021-08-21 06:17:50,944 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2021-08-21 06:17:50,960 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2021-08-21 06:17:50,976 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 5 2021-08-21 06:17:50,990 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 6 2021-08-21 06:17:51,005 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 7 2021-08-21 06:17:51,022 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:17:51,402 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:51,403 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:17:51,432 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:17:52,571 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 6 2021-08-21 06:17:52,625 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 3 2021-08-21 06:17:52,634 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2021-08-21 06:17:52,638 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 4 2021-08-21 06:17:52,747 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 5 2021-08-21 06:17:52,930 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 8 2021-08-21 06:17:52,940 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 8 (source not uniform) 2021-08-21 06:17:52,944 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2021-08-21 06:17:53,053 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 14 2021-08-21 06:17:53,189 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 16 2021-08-21 06:17:53,330 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:17:53,776 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). 2021-08-21 06:17:53,778 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:17:53,834 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:17:53,834 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2021-08-21 06:17:54,929 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2021-08-21 06:17:54,991 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 6 2021-08-21 06:17:54,992 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:54,997 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 3 2021-08-21 06:17:54,997 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:17:55,002 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 4 2021-08-21 06:17:55,002 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,007 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 5 2021-08-21 06:17:55,008 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,013 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 8 2021-08-21 06:17:55,013 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:17:55,018 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2021-08-21 06:17:55,019 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,024 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 14 2021-08-21 06:17:55,024 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,029 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 16 2021-08-21 06:17:55,030 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:17:55,037 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:17:55,548 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from nrs_mos_with_bkgslits_cal.fits>,). 2021-08-21 06:17:55,551 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:17:55,593 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:17:55,594 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:17:55,595 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:17:55,595 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits 2021-08-21 06:17:56,564 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:56,591 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,594 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:56,619 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,623 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:56,649 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,652 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:56,677 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:17:56,689 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 2021-08-21 06:17:56,850 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:56,887 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:56,894 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:56,929 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:56,937 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:56,973 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:56,981 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:57,015 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 842) --> (15, 842) 2021-08-21 06:17:57,035 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.162050147 -27.807721575 53.162359602 -27.807721575 53.162359602 -27.807411164 53.162050147 -27.807411164 2021-08-21 06:17:57,194 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:57,231 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,237 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:57,271 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,278 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:57,314 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,322 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:57,356 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 781) --> (15, 781) 2021-08-21 06:17:57,375 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.172455538 -27.816239537 53.172768443 -27.816239537 53.172768443 -27.815925884 53.172455538 -27.815925884 2021-08-21 06:17:57,586 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:57,641 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,652 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:57,706 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,719 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:57,773 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,785 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:57,837 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:17:57,863 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 2021-08-21 06:17:58,010 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:58,044 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,050 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:58,082 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,089 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:58,122 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,129 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:58,161 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 641) --> (15, 641) 2021-08-21 06:17:58,179 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.174810158 -27.812383895 53.175123060 -27.812383895 53.175123060 -27.812070952 53.174810158 -27.812070952 2021-08-21 06:17:58,337 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:58,373 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,380 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:58,414 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,421 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:58,457 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,465 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:58,498 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:17:58,517 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 2021-08-21 06:17:58,687 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:58,727 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,735 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:58,774 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:58,824 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,833 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:58,874 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 978) --> (15, 978) 2021-08-21 06:17:58,895 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.168606661 -27.821093649 53.168919392 -27.821093649 53.168919392 -27.820779180 53.168606661 -27.820779180 2021-08-21 06:17:59,068 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:17:59,109 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,117 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:17:59,155 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,165 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:17:59,206 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,215 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:17:59,254 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:17:59,275 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 2021-08-21 06:18:00,159 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in nrs_mos_with_bkgslits_s2d.fits 2021-08-21 06:18:00,160 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:18:00,506 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from nrs_mos_with_bkgslits_s2d.fits>,). 2021-08-21 06:18:00,507 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:18:00,577 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:18:00,602 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:18:00,638 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:18:00,639 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 6 2021-08-21 06:18:00,639 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:00,643 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:00,643 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=274, ystart=3.5, ystop=10.5 2021-08-21 06:18:00,715 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 3 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 410.92, which is outside the bounding box, 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:00,724 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=841, ystart=3.5, ystop=10.5 2021-08-21 06:18:00,877 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:18:02,179 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 4 2021-08-21 06:18:02,179 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:02,185 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:02,185 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=780, ystart=3.5, ystop=10.5 2021-08-21 06:18:02,335 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 5 2021-08-21 06:18:02,335 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:02,343 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:02,344 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1278, ystart=3.5, ystop=10.5 2021-08-21 06:18:02,567 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 8 2021-08-21 06:18:02,575 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 87.34, which is outside the bounding box, 2021-08-21 06:18:02,575 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:18:02,575 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:02,576 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=640, ystart=3.5, ystop=10.5 2021-08-21 06:18:02,698 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:18:03,695 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2021-08-21 06:18:03,695 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:03,702 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:03,702 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=781, ystart=3.5, ystop=10.5 2021-08-21 06:18:03,851 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 14 2021-08-21 06:18:03,851 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:03,858 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:03,858 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=977, ystart=3.5, ystop=10.5 2021-08-21 06:18:04,034 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 16 2021-08-21 06:18:04,034 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:18:04,041 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:18:04,041 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1011, ystart=3.0, ystop=10.0 2021-08-21 06:18:04,476 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in nrs_mos_with_bkgslits_x1d.fits 2021-08-21 06:18:04,476 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:18:04,477 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits 2021-08-21 06:18:04,477 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:18:05,969 - stpipe.Spec2Pipeline - INFO - Saved model in nrs_mos_with_bkgslits_cal.fits 2021-08-21 06:18:05,969 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ 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DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'nrs_mos_with_bkgslits_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 1 [(3, 1, 3, 108, 121, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 108, 122, 35, 'N', 'OPEN', 0.47603804, 0.29847124, 1, 'Y'), (3, 1, 3, 108, 123, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 37, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 38, 29, 'N', 'OPEN', 0.48960054, 0.63718337, 1, 'Y'), (4, 1, 3, 91, 39, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 64, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 65, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 66, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 169, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 170, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 171, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 47, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 48, 15, 'N', 'OPEN', 0.3641984, 0.17683797, 1, 'Y'), (8, 1, 3, 36, 49, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 145, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 146, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 147, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 28, 6, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 29, 6, 'N', 'OPEN', 0.4311356, 0.19721484, 1, 'Y'), (14, 1, 3, 168, 30, 31, 'N', 'OPEN', 0.69895035, 0.5455596, 1, 'N'), (16, 1, 3, 182, 21, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 22, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 23, 0, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 1 [(3, 1, 3, 108, 121, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 108, 122, 35, 'N', 'OPEN', 0.47603804, 0.29847124, 1, 'Y'), (3, 1, 3, 108, 123, 35, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 37, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 91, 38, 29, 'N', 'OPEN', 0.48960054, 0.63718337, 1, 'Y'), (4, 1, 3, 91, 39, 29, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 64, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 65, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (5, 1, 3, 282, 66, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 169, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 170, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (6, 1, 1, 336, 171, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 47, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 1, 3, 36, 48, 15, 'N', 'OPEN', 0.3641984, 0.17683797, 1, 'Y'), (8, 1, 3, 36, 49, 15, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 145, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 146, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 3, 83, 147, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 28, 6, 'Y', 'OPEN', nan, nan, 1, 'N'), (14, 1, 3, 168, 29, 6, 'N', 'OPEN', 0.4311356, 0.19721484, 1, 'Y'), (14, 1, 3, 168, 30, 31, 'N', 'OPEN', 0.69895035, 0.5455596, 1, 'N'), (16, 1, 3, 182, 21, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 22, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (16, 1, 3, 182, 23, 0, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 5 is background only; assigned source_id = 36 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 5 is background only; assigned source_id = 36 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 6 is background only; assigned source_id = 37 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 6 is background only; assigned source_id = 37 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 10 is background only; assigned source_id = 38 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 10 is background only; assigned source_id = 38 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 16 is background only; assigned source_id = 39 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 16 is background only; assigned source_id = 39 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [3, 4, 5, 6, 8, 10, 14, 16] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 8 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 8 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 7 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 7 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_msa.fits'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:25 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:321 JwstStep instance created. DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.3763368051194907 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(2048, 2048) from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 6 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 6 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1773 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1773 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1182 1207 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1182 1207 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171078528 -27.791415860 53.170750619 -27.791089880 53.170705035 -27.791125581 53.171032939 -27.791451565 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1206 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1206 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1422 1445 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1422 1445 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.162391167 -27.807712378 53.162058690 -27.807378878 53.162013132 -27.807414788 53.162345604 -27.807748292 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1267 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1267 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1842 1865 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1842 1865 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.172801385 -27.816231603 53.172466245 -27.815895667 53.172420535 -27.815931690 53.172755669 -27.816267630 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 5 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 5 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 769 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 769 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1705 1733 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1705 1733 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157746606 -27.822731627 53.157418384 -27.822400087 53.157372759 -27.822436254 53.157700976 -27.822767798 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1407 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1407 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1792 1815 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1792 1815 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.175158841 -27.812378836 53.174823590 -27.812043546 53.174777873 -27.812079509 53.175113118 -27.812414803 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1266 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1266 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1302 1325 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1302 1325 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.161307493 -27.803809420 53.160980308 -27.803481556 53.160934781 -27.803517409 53.161261961 -27.803845278 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 14 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 14 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1070 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1070 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1886 1911 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1886 1911 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -1.75 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168943086 -27.821076314 53.168608247 -27.820739620 53.168562546 -27.820775726 53.168897379 -27.821112425 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 16 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 16 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1036 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1036 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1921 1946 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1921 1946 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -2.9 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168838248 -27.822558720 53.168508090 -27.822226543 53.168462379 -27.822262674 53.168792532 -27.822594855 INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=37, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=37, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=35, stellarity=0.9200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=35, stellarity=0.9200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=29, stellarity=0.1500, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=29, stellarity=0.1500, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=36, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=36, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=15, stellarity=0.8200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=15, stellarity=0.8200, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=38, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=38, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=6, stellarity=0.4800, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=6, stellarity=0.4800, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=39, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=39, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': True, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:130 Calculating master background INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done DEBUG stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:244 Calculating 1D master background INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:97 Creating MOS master background from background slitlets DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:step.py:774 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.Spec2Pipeline.master_background:step.py:795 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:321 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:367 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.ResampleSpecStep:step.py:371 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_rate.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.ResampleSpecStep:step.py:470 Step ResampleSpecStep done DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:step.py:774 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.Spec2Pipeline.master_background:step.py:795 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:321 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:367 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Extract1dStep:step.py:371 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = 8 DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:step.py:470 Step Extract1dStep done INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.Spec2Pipeline.master_background:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.Spec2Pipeline.master_background:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.Spec2Pipeline.master_background:combine1d.py:529 Using exposure time as the weight. INFO stpipe.Spec2Pipeline.master_background:combine1d.py:529 Using exposure time as the weight. DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.Spec2Pipeline.master_background:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:243 these elements will be omitted. WARNING stpipe.Spec2Pipeline.master_background:combine1d.py:243 these elements will be omitted. DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 6 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 14 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 16 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_rate.fits> DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:step.py:928 Saved model in nrs_mos_with_bkgslits_masterbg1d.fits INFO stpipe.Spec2Pipeline.master_background:step.py:928 Saved model in nrs_mos_with_bkgslits_masterbg2d.fits INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 6 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 6 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 3 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 5 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 5 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 8 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 14 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 14 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 16 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 16 INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 6 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 3 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6710 out of 19366 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6710 out of 19366 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 4 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 5 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5133 out of 14743 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5133 out of 14743 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 14 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 16 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 6 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 7 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 6 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 5 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 8 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 8 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 14 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 16 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_rate.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 6 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 6 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 4 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 4 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 5 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 5 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 14 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 14 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 16 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 16 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from nrs_mos_with_bkgslits_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 37 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 37 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 35 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 35 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 29 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 29 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 36 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 36 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 15 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 15 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 38 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 38 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 6 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 6 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 39 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 39 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041289 -27.791419408 53.171041289 -27.791112165 53.170732234 -27.791112165 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 841.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 842) --> (15, 842) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.162050147 -27.807721575 53.162359602 -27.807721575 53.162359602 -27.807411164 53.162050147 -27.807411164 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.162050147 -27.807721575 53.162359602 -27.807721575 53.162359602 -27.807411164 53.162050147 -27.807411164 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 780.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 781) --> (15, 781) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.172455538 -27.816239537 53.172768443 -27.816239537 53.172768443 -27.815925884 53.172455538 -27.815925884 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.172455538 -27.816239537 53.172768443 -27.816239537 53.172768443 -27.815925884 53.172455538 -27.815925884 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.157409079 -27.822745996 53.157719735 -27.822745996 53.157719735 -27.822432196 53.157409079 -27.822432196 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 640.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 641) --> (15, 641) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.174810158 -27.812383895 53.175123060 -27.812383895 53.175123060 -27.812070952 53.174810158 -27.812070952 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.174810158 -27.812383895 53.175123060 -27.812383895 53.175123060 -27.812070952 53.174810158 -27.812070952 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824283 53.161281639 -27.803824283 53.161281639 -27.803514993 53.160972994 -27.803514993 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 977.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 978) --> (15, 978) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168606661 -27.821093649 53.168919392 -27.821093649 53.168919392 -27.820779180 53.168606661 -27.820779180 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168606661 -27.821093649 53.168919392 -27.821093649 53.168919392 -27.820779180 53.168606661 -27.820779180 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.168506803 -27.822558790 53.168797354 -27.822558790 53.168797354 -27.822266459 53.168506803 -27.822266459 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in nrs_mos_with_bkgslits_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from nrs_mos_with_bkgslits_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 6 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 6 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=274, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 3 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 3 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 410.92, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 410.92, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 420 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 420 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=841, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=841, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=780, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=780, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1278, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 87.34, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 87.34, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 320 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 320 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=640, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=640, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=781, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 14 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 14 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=977, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=977, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 16 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 16 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[2.5], [10.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1011, ystart=3.0, ystop=10.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in nrs_mos_with_bkgslits_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in nrs_mos_with_bkgslits_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_cal.fits HTTP/1.1" 200 7107840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[masterbg2d] | 0.52 | |
|
suffix = 'masterbg2d' run_spec2_mbkg = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...sterbg2d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 'masterbg1d', 'masterbg2d'] ) def test_nirspec_mos_mbkg(suffix, run_spec2_mbkg, fitsdiff_default_kwargs): """Run spec2 with master background""" rtdata = run_spec2_mbkg > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_with_bkgslits_masterbg2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/nrs_mos_with_bkgslits_masterbg2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E Keyword SLTSIZE2 has different values: E a> 25 E b> 19 E Keyword SLTSTRT2 has different values: E a> 1183 E ? ^ E b> 1184 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 10 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 19 E E Data contains differences: E Data dimensions differ: E a: 275 x 25 E b: 275 x 19 E No further data comparison performed. E E Extension HDU 11 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1423 E ? ^ E b> 1424 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 12 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 13 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 14 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 15 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 16 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 17 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 18 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 19 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 20 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 842 x 23 E b: 842 x 22 E No further data comparison performed. E E Extension HDU 21 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1843 E ? ^ E b> 1844 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 22 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 23 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 24 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 25 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 29 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 30 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 781 x 23 E b: 781 x 22 E No further data comparison performed. E E Extension HDU 31 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 1706 E ? ^ E b> 1707 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 32 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 33 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 34 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 35 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 36 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 37 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 38 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 39 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 40 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1279 x 28 E b: 1279 x 27 E No further data comparison performed. E E Extension HDU 41 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1793 E ? ^ E b> 1794 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 42 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 43 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 44 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 45 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 46 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 47 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 48 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 49 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 50 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 641 x 23 E b: 641 x 22 E No further data comparison performed. E E Extension HDU 51 (SCI, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E Keyword SLTSIZE2 has different values: E a> 23 E b> 22 E Keyword SLTSTRT2 has different values: E a> 1303 E ? ^ E b> 1304 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 52 (DQ, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 53 (ERR, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 54 (WAVELENGTH, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 55 (BARSHADOW, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 56 (VAR_POISSON, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 57 (VAR_RNOISE, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 58 (VAR_FLAT, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 59 (PATHLOSS_PS, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 60 (PATHLOSS_UN, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 23 E b> 22 E E Data contains differences: E Data dimensions differ: E a: 782 x 23 E b: 782 x 22 E No further data comparison performed. E E Extension HDU 61 (SCI, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1887 E ? ^ E b> 1888 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 62 (DQ, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 63 (ERR, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 64 (WAVELENGTH, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 65 (BARSHADOW, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 66 (VAR_POISSON, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 67 (VAR_RNOISE, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 68 (VAR_FLAT, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 69 (PATHLOSS_PS, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 70 (PATHLOSS_UN, 7): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 978 x 25 E b: 978 x 24 E No further data comparison performed. E E Extension HDU 71 (SCI, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E Keyword SLTSIZE2 has different values: E a> 25 E b> 24 E Keyword SLTSTRT2 has different values: E a> 1922 E ? ^ E b> 1923 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 72 (DQ, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 73 (ERR, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 74 (WAVELENGTH, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 75 (BARSHADOW, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 76 (VAR_POISSON, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 77 (VAR_RNOISE, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 78 (VAR_FLAT, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 79 (PATHLOSS_PS, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E Extension HDU 80 (PATHLOSS_UN, 8): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 24 E E Data contains differences: E Data dimensions differ: E a: 1012 x 25 E b: 1012 x 24 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308804640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:100: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg2d.fits HTTP/1.1" 200 7102080 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[cal] | 102.35 | |
|
suffix = 'cal' run_spec2_mbkg_user = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...l.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 's2d', 'x1d'] ) def test_nirspec_mos_mbkg_user(suffix, run_spec2_mbkg_user, fitsdiff_default_kwargs): """Run spec2 with master background and user-supplied mbkg""" rtdata = run_spec2_mbkg_user > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg_user') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/jw00626030001_02103_00001_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E Keyword SLTSIZE2 has different values: E a> 27 E b> 20 E Keyword SLTSTRT2 has different values: E a> 1916 E ? ^ E b> 1917 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 9 (PATHLOSS_PS, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 10 (PATHLOSS_UN, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 227 x 27 E b: 227 x 20 E No further data comparison performed. E E Extension HDU 11 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E Keyword SLTSIZE2 has different values: E a> 25 E b> 20 E Keyword SLTSTRT2 has different values: E a> 709 E b> 710 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 12 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 13 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 14 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 15 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 16 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 17 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 18 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 19 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 20 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 25 E b> 20 E E Data contains differences: E Data dimensions differ: E a: 271 x 25 E b: 271 x 20 E No further data comparison performed. E E Extension HDU 21 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 22 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 23 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 24 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 25 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1139 x 27 E b: 1139 x 26 E No further data comparison performed. E E Extension HDU 29 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 30 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 31 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 33 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1338 x 29 E b: 1338 x 28 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E Keyword SLTSIZE2 has different values: E a> 18 E b> 17 E Keyword SLTSTRT2 has different values: E a> 1355 E ? ^ E b> 1356 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 43 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 44 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 45 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 46 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 48 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 18 E b> 17 E E Data contains differences: E Data dimensions differ: E a: 1331 x 18 E b: 1331 x 17 E No further data comparison performed. E E Extension HDU 49 (SCI, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 50 (DQ, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 51 (ERR, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 52 (WAVELENGTH, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 53 (BARSHADOW, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 54 (VAR_POISSON, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 55 (VAR_RNOISE, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 56 (VAR_FLAT, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 57 (PATHLOSS_PS, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 58 (PATHLOSS_UN, 6): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f635687df40>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:110: AssertionError -----------------------------Captured stderr setup------------------------------ 2021-08-21 06:18:10,484 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:18:10,485 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:18:10,486 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:18:10,487 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:18:10,488 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:18:10,488 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:18:10,491 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:18:10,492 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:18:10,492 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:18:10,493 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:18:10,494 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:18:10,494 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:18:10,496 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:18:10,497 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:18:10,498 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:18:10,498 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:18:10,499 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:18:10,500 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:18:10,500 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:18:10,501 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:18:10,502 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:18:10,503 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:18:10,503 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:18:10,503 - stpipe - INFO - OS: Linux 2021-08-21 06:18:10,622 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits',). 2021-08-21 06:18:10,634 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:18:10,792 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:18:10,804 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 06:18:10,806 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 06:18:10,807 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 06:18:10,809 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:18:10,810 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:18:10,811 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:18:10,811 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:18:10,812 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:18:10,813 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:18:10,813 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:18:10,813 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 06:18:10,815 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 06:18:10,815 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:18:10,816 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:18:10,816 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 06:18:10,818 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:18:10,819 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 06:18:10,819 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:18:10,820 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:18:10,820 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:18:10,820 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:18:10,821 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:18:10,823 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:18:10,824 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 06:18:10,826 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 06:18:10,827 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:18:10,827 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:18:10,828 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 06:18:10,828 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:18:10,829 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 06:18:10,829 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:18:10,831 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:18:10,831 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:18:10,832 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 2021-08-21 06:18:10,832 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits ... 2021-08-21 06:18:11,117 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:11,118 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:18:11,265 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 2021-08-21 06:18:11,278 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slitlet_id 8 is background only; assigned source_id = 2316 2021-08-21 06:18:11,331 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:18:11,331 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.316133170999999 deg 2021-08-21 06:18:11,332 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200586192 deg 2021-08-21 06:18:11,332 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:18:11,585 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] 2021-08-21 06:18:11,585 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 6 open slitlets 2021-08-21 06:18:11,613 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:18:11,613 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.316133170999999 deg 2021-08-21 06:18:11,613 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.005914304200586192 deg 2021-08-21 06:18:11,614 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:18:11,623 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:18:11,738 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 1 2021-08-21 06:18:11,746 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 2 2021-08-21 06:18:11,754 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 3 open slits in quadrant 3 2021-08-21 06:18:11,779 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 4 2021-08-21 06:18:11,787 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:18:11,905 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} 2021-08-21 06:18:12,268 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:18:12,274 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:18:12,393 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). 2021-08-21 06:18:12,394 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:18:12,394 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:18:12,395 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:18:12,510 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). 2021-08-21 06:18:12,511 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:18:12,511 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:18:12,512 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:18:12,627 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:12,628 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:18:12,645 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2021-08-21 06:18:12,646 - stpipe.JwstStep - INFO - JwstStep instance created. 2021-08-21 06:18:12,763 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.139291257 deg 2021-08-21 06:18:12,763 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.316133170999999 deg 2021-08-21 06:18:12,764 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.005914304200586192 deg 2021-08-21 06:18:12,764 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2021-08-21 06:18:12,773 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:18:12,892 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2021-08-21 06:18:12,933 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2021-08-21 06:18:12,958 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2021-08-21 06:18:13,035 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2021-08-21 06:18:13,063 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:18:24,252 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:18:24,495 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:24,496 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:18:24,513 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2021-08-21 06:18:24,698 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 20 2021-08-21 06:18:24,698 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1821 2048 2021-08-21 06:18:24,699 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1915 1942 2021-08-21 06:18:24,822 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:24,830 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 2021-08-21 06:18:24,831 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 2021-08-21 06:18:25,002 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 21 2021-08-21 06:18:25,002 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1777 2048 2021-08-21 06:18:25,003 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 708 733 2021-08-21 06:18:25,125 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:25,133 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 2021-08-21 06:18:25,133 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 2021-08-21 06:18:25,456 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 1 2021-08-21 06:18:25,456 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 909 2048 2021-08-21 06:18:25,456 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1845 1872 2021-08-21 06:18:25,598 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:25,607 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 2021-08-21 06:18:25,607 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 2021-08-21 06:18:25,784 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 2 2021-08-21 06:18:25,784 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 710 2048 2021-08-21 06:18:25,784 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1614 1643 2021-08-21 06:18:25,936 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:25,944 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 2021-08-21 06:18:25,945 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 2021-08-21 06:18:26,120 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 8 2021-08-21 06:18:26,121 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 717 2048 2021-08-21 06:18:26,121 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1354 1372 2021-08-21 06:18:26,252 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:26,260 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 2021-08-21 06:18:26,261 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 2021-08-21 06:18:26,602 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2021-08-21 06:18:26,602 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 605 2038 2021-08-21 06:18:26,602 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 707 735 2021-08-21 06:18:26,750 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:18:26,758 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 2021-08-21 06:18:26,759 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 2021-08-21 06:18:26,960 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:18:27,132 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:27,133 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:18:27,140 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2021-08-21 06:18:27,140 - stpipe.Spec2Pipeline.srctype - INFO - source_id=443, stellarity=1.0000, type=POINT 2021-08-21 06:18:27,141 - stpipe.Spec2Pipeline.srctype - INFO - source_id=482, stellarity=0.2000, type=EXTENDED 2021-08-21 06:18:27,141 - stpipe.Spec2Pipeline.srctype - INFO - source_id=227, stellarity=0.2000, type=EXTENDED 2021-08-21 06:18:27,142 - stpipe.Spec2Pipeline.srctype - INFO - source_id=279, stellarity=1.0000, type=POINT 2021-08-21 06:18:27,142 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2316, stellarity=0.0000, type=EXTENDED 2021-08-21 06:18:27,142 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2315, stellarity=0.8000, type=POINT 2021-08-21 06:18:27,144 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:18:27,293 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:27,296 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:18:27,303 - stpipe.Spec2Pipeline.master_background - INFO - Calculating master background from user-supplied background jw00626030001_02103_00001_nrs1_masterbg1d.fits 2021-08-21 06:18:27,508 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:27,509 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:18:35,675 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 20 2021-08-21 06:18:36,581 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 21 2021-08-21 06:18:37,650 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 1 2021-08-21 06:18:41,833 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 2 2021-08-21 06:18:46,547 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:18:48,376 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:18:53,911 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:18:54,265 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:54,266 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:18:54,299 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:18:54,336 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:18:55,397 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:18:55,411 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - WARNING - Source is outside slit. 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:18:55,425 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:18:55,442 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:18:55,457 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:18:55,474 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:18:55,707 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:55,708 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:18:55,734 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:18:56,577 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 20 2021-08-21 06:18:56,626 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 21 2021-08-21 06:18:56,678 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 1 2021-08-21 06:18:56,837 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 2 2021-08-21 06:18:57,029 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:18:57,130 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:18:57,333 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:18:57,599 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:57,600 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:18:57,648 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:18:57,648 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:18:58,472 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:18:58,527 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 20 2021-08-21 06:18:58,527 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,532 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 21 2021-08-21 06:18:58,533 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,537 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 1 2021-08-21 06:18:58,537 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,544 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 2 2021-08-21 06:18:58,544 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,550 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:18:58,551 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,556 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:18:58,557 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:18:58,564 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:18:58,565 - stpipe.Spec2Pipeline.master_background - INFO - Interpolating 1D master background to all MOS 2D slitlets 2021-08-21 06:18:59,685 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 20 2021-08-21 06:18:59,686 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 21 2021-08-21 06:18:59,686 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 1 2021-08-21 06:18:59,687 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 2 2021-08-21 06:18:59,688 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 8 2021-08-21 06:18:59,688 - stpipe.Spec2Pipeline.master_background - INFO - Expanding background for slit 10 2021-08-21 06:18:59,946 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:18:59,947 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:18:59,954 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:18:59,954 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:18:59,954 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:19:00,761 - stpipe.Spec2Pipeline.master_background.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - detector: NRS1 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - filter: F170LP 2021-08-21 06:19:00,762 - stpipe.Spec2Pipeline.master_background.photom - INFO - grating: G235M 2021-08-21 06:19:00,818 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 20 2021-08-21 06:19:00,819 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,823 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 21 2021-08-21 06:19:00,824 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,828 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 1 2021-08-21 06:19:00,828 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,834 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 2 2021-08-21 06:19:00,834 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,840 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 8 2021-08-21 06:19:00,840 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,845 - stpipe.Spec2Pipeline.master_background.photom - INFO - Working on slit 10 2021-08-21 06:19:00,846 - stpipe.Spec2Pipeline.master_background.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:00,852 - stpipe.Spec2Pipeline.master_background.photom - INFO - Step photom done 2021-08-21 06:19:01,156 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:01,158 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:19:02,002 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 20 2021-08-21 06:19:02,006 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 21 2021-08-21 06:19:02,009 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 1 2021-08-21 06:19:02,013 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 2 2021-08-21 06:19:02,017 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 8 2021-08-21 06:19:02,021 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Working on slitlet 10 2021-08-21 06:19:02,026 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - Step barshadow done 2021-08-21 06:19:02,324 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:02,325 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:19:02,332 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:19:03,166 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 0 2021-08-21 06:19:03,171 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 1 2021-08-21 06:19:03,175 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 2 2021-08-21 06:19:03,175 - stpipe.Spec2Pipeline.master_background.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:19:03,175 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 3 2021-08-21 06:19:03,179 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 4 2021-08-21 06:19:03,184 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Working on slit 5 2021-08-21 06:19:03,189 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - Step pathloss done 2021-08-21 06:19:03,522 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:03,524 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:19:03,531 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits> 2021-08-21 06:19:04,369 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 20 2021-08-21 06:19:04,372 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 21 2021-08-21 06:19:04,375 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 1 2021-08-21 06:19:04,379 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 2 2021-08-21 06:19:04,382 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 8 2021-08-21 06:19:04,386 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Working on slit 10 2021-08-21 06:19:04,391 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - Step flat_field done 2021-08-21 06:19:04,396 - stpipe.Spec2Pipeline.master_background - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:19:05,642 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:19:05,962 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:05,963 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} 2021-08-21 06:19:05,993 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf 2021-08-21 06:19:06,846 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 20 2021-08-21 06:19:06,906 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:19:06,908 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 21 2021-08-21 06:19:06,908 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 1 2021-08-21 06:19:06,908 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 2 2021-08-21 06:19:07,014 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:19:07,019 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 8 2021-08-21 06:19:07,019 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 10 2021-08-21 06:19:07,123 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:19:07,130 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:19:07,458 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:07,460 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:19:15,563 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 20 2021-08-21 06:19:16,471 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 21 2021-08-21 06:19:17,544 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 1 2021-08-21 06:19:21,791 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 2 2021-08-21 06:19:26,737 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 8 2021-08-21 06:19:28,574 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2021-08-21 06:19:34,397 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:19:34,866 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:34,869 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:19:34,898 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:19:34,936 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:19:35,772 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2021-08-21 06:19:35,786 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - WARNING - Source is outside slit. 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:19:35,800 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2021-08-21 06:19:35,818 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2021-08-21 06:19:35,832 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 5 2021-08-21 06:19:35,850 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:19:36,166 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:36,167 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:19:36,194 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:19:37,058 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 20 2021-08-21 06:19:37,067 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 20 (source not uniform) 2021-08-21 06:19:37,070 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 21 2021-08-21 06:19:37,123 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 1 2021-08-21 06:19:37,281 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 2 2021-08-21 06:19:37,291 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 2 (source not uniform) 2021-08-21 06:19:37,294 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 8 2021-08-21 06:19:37,389 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2021-08-21 06:19:37,400 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 10 (source not uniform) 2021-08-21 06:19:37,406 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:19:37,774 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). 2021-08-21 06:19:37,776 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} 2021-08-21 06:19:37,823 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:19:37,823 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:19:38,668 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2021-08-21 06:19:38,669 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2021-08-21 06:19:38,722 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 20 2021-08-21 06:19:38,723 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:19:38,727 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 21 2021-08-21 06:19:38,728 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:38,732 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 1 2021-08-21 06:19:38,733 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:38,740 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 2 2021-08-21 06:19:38,740 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:19:38,746 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 8 2021-08-21 06:19:38,747 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:19:38,752 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2021-08-21 06:19:38,752 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:19:38,760 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:19:39,196 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_cal.fits>,). 2021-08-21 06:19:39,198 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:19:39,234 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:19:39,234 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:19:39,235 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits 2021-08-21 06:19:39,996 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:40,021 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,023 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:40,048 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,051 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:40,075 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,077 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:40,103 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (15, 227) 2021-08-21 06:19:40,114 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.156599247 -28.977471802 53.157027253 -28.977471802 53.157027253 -28.977283305 53.156599247 -28.977283305 2021-08-21 06:19:40,229 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:40,256 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,258 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:40,285 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,288 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:40,314 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,317 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:40,344 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (15, 271) 2021-08-21 06:19:40,356 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.120210201 -28.993373375 53.120625420 -28.993373375 53.120625420 -28.993190967 53.120210201 -28.993190967 2021-08-21 06:19:40,547 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:40,595 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,605 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:40,653 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,664 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:40,710 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,721 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:40,769 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (15, 1139) 2021-08-21 06:19:40,793 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.167900825 -29.001917421 53.168329572 -29.001917421 53.168329572 -29.001732020 53.167900825 -29.001732020 2021-08-21 06:19:41,004 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:41,057 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,069 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:41,121 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,133 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:41,184 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,197 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:41,249 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (16, 1338) 2021-08-21 06:19:41,275 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.163666676 -29.009833799 53.164123837 -29.009833799 53.164123837 -29.009636814 53.163666676 -29.009636814 2021-08-21 06:19:41,411 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:41,449 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,453 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:41,490 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,495 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:41,531 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,536 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:41,574 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (5, 1331) 2021-08-21 06:19:41,589 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.155498868 -29.012771347 53.155619938 -29.012771347 53.155619938 -29.012719152 53.155498868 -29.012719152 2021-08-21 06:19:41,808 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:19:41,862 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:41,873 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:19:41,927 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:41,940 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:19:41,994 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:42,008 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:19:42,062 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:19:42,092 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.137343841 -29.023333510 53.137760806 -29.023333510 53.137760806 -29.023153834 53.137343841 -29.023153834 2021-08-21 06:19:42,437 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw00626030001_02103_00001_nrs1_s2d.fits 2021-08-21 06:19:42,438 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:19:42,784 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_s2d.fits>,). 2021-08-21 06:19:42,785 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:19:42,815 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:19:42,836 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:19:42,873 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:19:42,873 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 20 2021-08-21 06:19:42,879 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 59.41, which is outside the bounding box, 2021-08-21 06:19:42,879 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:19:42,880 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:42,880 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=226, ystart=3.5, ystop=10.5 2021-08-21 06:19:42,940 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:19:43,292 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 21 2021-08-21 06:19:43,292 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:19:43,296 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:43,296 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=270, ystart=3.5, ystop=10.5 2021-08-21 06:19:43,367 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 1 2021-08-21 06:19:43,367 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:19:43,375 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:43,375 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1138, ystart=3.5, ystop=10.5 2021-08-21 06:19:43,570 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 2 2021-08-21 06:19:43,583 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at -54.30, which is outside the bounding box, 2021-08-21 06:19:43,583 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:19:43,584 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:43,584 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1337, ystart=4.0, ystop=11.0 2021-08-21 06:19:43,806 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:19:45,874 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 8 2021-08-21 06:19:45,874 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:19:45,879 - stpipe.Spec2Pipeline.extract_1d - WARNING - extract_width was truncated from 8 to 5 2021-08-21 06:19:45,880 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:45,880 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1330, ystart=-1.5, ystop=5.5 2021-08-21 06:19:45,882 - stpipe.Spec2Pipeline.extract_1d - WARNING - Source extraction limit extends below -0.5 2021-08-21 06:19:45,883 - stpipe.Spec2Pipeline.extract_1d - WARNING - Source extraction limit extends above 4.5 2021-08-21 06:19:46,100 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2021-08-21 06:19:46,112 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at 79.51, which is outside the bounding box, 2021-08-21 06:19:46,112 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:19:46,113 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:19:46,113 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1432, ystart=3.5, ystop=10.5 2021-08-21 06:19:46,346 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw00626030001_02103_00001_nrs1_x1d.fits 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 2021-08-21 06:19:48,736 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:19:49,806 - stpipe.Spec2Pipeline - INFO - Saved model in jw00626030001_02103_00001_nrs1_cal.fits 2021-08-21 06:19:49,806 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET 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(1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_3pointnod_1_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_3pointnod_1_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_masterbg1d.fits HTTP/1.1" 200 149760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 5 [(1, 5, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 5, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 5, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 5, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 5, 3, 218, 136, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 5, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 22, 443, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (20, 5, 1, 251, 23, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 24, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 22, 482, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (21, 5, 2, 251, 23, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 24, 482, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 5 [(1, 5, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 5, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 5, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 5, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 5, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (8, 5, 3, 218, 136, 0, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 5, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 5, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 22, 443, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (20, 5, 1, 251, 23, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (20, 5, 1, 251, 24, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 22, 482, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (21, 5, 2, 251, 23, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (21, 5, 2, 251, 24, 482, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 5 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 8 is background only; assigned source_id = 2316 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:645 Slitlet_id 8 is background only; assigned source_id = 2316 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [1, 2, 8, 10, 20, 21] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 6 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 6 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 3 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 3 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/nrs_mos_3pointnod_1_msa.fits'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:25 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:321 JwstStep instance created. DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0.139291257 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.316133170999999 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: 0.005914304200586192 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(2048, 2048) from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 20 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 20 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1821 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1821 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1915 1942 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1915 1942 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.157040698 -28.977246946 53.156582655 -28.977448677 53.156610178 -28.977497225 53.157068225 -28.977295501 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 21 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 21 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1777 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1777 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 733 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 708 733 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.120636026 -28.993156166 53.120187414 -28.993353248 53.120214704 -28.993401359 53.120663318 -28.993204282 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 909 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 909 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1845 1872 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1845 1872 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.168324586 -29.001703828 53.167865339 -29.001902421 53.167893185 -29.001950811 53.168352436 -29.001752223 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 710 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 710 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1614 1643 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1614 1643 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.164110352 -29.009612208 53.163652590 -29.009809455 53.163680465 -29.009857765 53.164138231 -29.009660524 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 8 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 717 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 717 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1354 1372 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1354 1372 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.155628964 -29.012684914 53.155479284 -29.012749444 53.155507083 -29.012797665 53.155656764 -29.012733136 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 605 2038 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 605 2038 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 707 735 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 707 735 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.137763493 -29.023122380 53.137312898 -29.023316550 53.137340565 -29.023364583 53.137791165 -29.023170417 INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=482, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=482, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=227, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=227, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=279, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=279, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2316, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2316, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2315, stellarity=0.8000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2315, stellarity=0.8000, type=POINT INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'force_subtract': False, 'save_background': False, 'user_background': 'jw00626030001_02103_00001_nrs1_masterbg1d.fits', 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None}}} DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:112 Calculating master background from user-supplied background jw00626030001_02103_00001_nrs1_masterbg1d.fits DEBUG stpipe.Spec2Pipeline.master_background:util.py:193 Opening jw00626030001_02103_00001_nrs1_masterbg1d.fits as <class 'jwst.datamodels.multicombinedspec.MultiCombinedSpecModel'> DEBUG stpipe.Spec2Pipeline.master_background:util.py:193 Opening jw00626030001_02103_00001_nrs1_masterbg1d.fits as <class 'jwst.datamodels.multicombinedspec.MultiCombinedSpecModel'> DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.Spec2Pipeline.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2732 out of 6129 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2732 out of 6129 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18700 out of 38802 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18700 out of 38802 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18463 out of 40124 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18463 out of 40124 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done DEBUG stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:241 User background provided <MultiCombinedSpecModel from jw00626030001_02103_00001_nrs1_masterbg1d.fits> INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 20 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 20 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 21 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 21 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 1 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 1 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 2 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 2 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.master_background.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.master_background.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 20 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 21 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 1 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 2 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.master_background.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.master_background.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 2 WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits> DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.Spec2Pipeline.master_background:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 20 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 20 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 21 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 21 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 2 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 8 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 10 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 20 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 20 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2734 out of 6129 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2734 out of 6129 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 21 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 21 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2680 out of 6775 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13668 out of 30753 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18711 out of 38802 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18711 out of 38802 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 17373 out of 23958 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 15 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18470 out of 40124 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18470 out of 40124 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 76 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:368 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 20 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 20 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 20 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 20 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 21 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 21 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 2 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 2 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 10 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 10 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 20 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 21 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 21 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 1 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 8 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2316 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2316 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (15, 227) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.156599247 -28.977471802 53.157027253 -28.977471802 53.157027253 -28.977283305 53.156599247 -28.977283305 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.156599247 -28.977471802 53.157027253 -28.977471802 53.157027253 -28.977283305 53.156599247 -28.977283305 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (15, 271) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.120210201 -28.993373375 53.120625420 -28.993373375 53.120625420 -28.993190967 53.120210201 -28.993190967 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.120210201 -28.993373375 53.120625420 -28.993373375 53.120625420 -28.993190967 53.120210201 -28.993190967 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (15, 1139) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.167900825 -29.001917421 53.168329572 -29.001917421 53.168329572 -29.001732020 53.167900825 -29.001732020 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.167900825 -29.001917421 53.168329572 -29.001917421 53.168329572 -29.001732020 53.167900825 -29.001732020 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (16, 1338) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.163666676 -29.009833799 53.164123837 -29.009833799 53.164123837 -29.009636814 53.163666676 -29.009636814 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.163666676 -29.009833799 53.164123837 -29.009833799 53.164123837 -29.009636814 53.163666676 -29.009636814 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (5, 1331) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.155498868 -29.012771347 53.155619938 -29.012771347 53.155619938 -29.012719152 53.155498868 -29.012719152 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.155498868 -29.012771347 53.155619938 -29.012771347 53.155619938 -29.012719152 53.155498868 -29.012719152 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.137343841 -29.023333510 53.137760806 -29.023333510 53.137760806 -29.023153834 53.137343841 -29.023153834 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.137343841 -29.023333510 53.137760806 -29.023333510 53.137760806 -29.023153834 53.137343841 -29.023153834 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in jw00626030001_02103_00001_nrs1_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from jw00626030001_02103_00001_nrs1_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 20 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 20 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 59.41, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 59.41, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=226, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=226, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 21 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 21 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=270, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=270, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1138, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1138, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 2 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at -54.30, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at -54.30, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 668 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 668 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.5], [11.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.5], [11.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1337, ystart=4.0, ystop=11.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1337, ystart=4.0, ystop=11.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 8 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:768 extract_width was truncated from 8 to 5 WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:768 extract_width was truncated from 8 to 5 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[-2.0], [6.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[-2.0], [6.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1330, ystart=-1.5, ystop=5.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1330, ystart=-1.5, ystop=5.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:188 Source extraction limit extends below -0.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:188 Source extraction limit extends below -0.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:193 Source extraction limit extends above 4.5 WARNING stpipe.Spec2Pipeline.extract_1d:extract1d.py:193 Source extraction limit extends above 4.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 79.51, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 79.51, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 716 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 716 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1432, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1432, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in jw00626030001_02103_00001_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 6062400 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[s2d] | 0.40 | |
|
suffix = 's2d' run_spec2_mbkg_user = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...d.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.parametrize( 'suffix', ['cal', 's2d', 'x1d'] ) def test_nirspec_mos_mbkg_user(suffix, run_spec2_mbkg_user, fitsdiff_default_kwargs): """Run spec2 with master background and user-supplied mbkg""" rtdata = run_spec2_mbkg_user > rt.is_like_truth(rtdata, fitsdiff_default_kwargs, suffix, truth_path='truth/test_nirspec_mos_mbkg_user') E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/jw00626030001_02103_00001_nrs1_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_masterbackground_run_spec2_mbkg0/truth/jw00626030001_02103_00001_nrs1_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 20 E Keyword SLTSTRT2 has different values: E a> 1916 E ? ^ E b> 1917 E ? ^ E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 25 E b> 20 E Keyword SLTSTRT2 has different values: E a> 709 E b> 710 E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 18 E b> 17 E Keyword SLTSTRT2 has different values: E a> 1355 E ? ^ E b> 1356 E ? ^ E E Extension HDU 36 (SCI, 6): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636624e7f0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:110: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_s2d.fits HTTP/1.1" 200 2505600 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_user | 146.96 | |
|
rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...ound.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} def test_nirspec_ifu_mbkg_user(rtdata, fitsdiff_default_kwargs): """Test NIRSpec IFU data with a user-supplied background file.""" # Get user-supplied background user_background = "prism_bkg_x1d.fits" rtdata.get_data(f"nirspec/ifu/{user_background}") # Get input data rtdata.get_data("nirspec/ifu/prism_sci_bkg_cal.fits") collect_pipeline_cfgs("config") args = ["config/master_background.cfg", rtdata.input, "--user_background", user_background] Step.from_cmdline(args) output = "prism_sci_bkg_master_background.fits" rtdata.output = output # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_user/{output}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_master_background.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/truth/prism_sci_bkg_master_background.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [641, 88]: E a> 513 E b> 512 E Data differs at [642, 88]: E a> 513 E b> 512 E Data differs at [643, 88]: E a> 517 E b> 516 E Data differs at [644, 88]: E a> 513 E b> 512 E Data differs at [645, 88]: E a> 513 E b> 512 E Data differs at [646, 88]: E a> 513 E b> 512 E Data differs at [647, 88]: E a> 513 E b> 512 E Data differs at [648, 88]: E a> 513 E b> 512 E Data differs at [649, 88]: E a> 513 E b> 512 E Data differs at [650, 88]: E a> 517 E b> 516 E ... E 24214 different pixels found (0.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630818e1c0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:161: AssertionError -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:20:07,486 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:20:07,487 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:20:07,487 - stpipe - INFO - OS: Linux 2021-08-21 06:20:07,785 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits',). 2021-08-21 06:20:07,786 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0', 'user_background': 'prism_bkg_x1d.fits', 'save_background': False, 'force_subtract': False} 2021-08-21 06:22:11,803 - stpipe.master_background - INFO - Applying point source pathloss updates to IFU background 2021-08-21 06:22:11,804 - stpipe.master_background - WARNING - Pathloss_point array not found in input 2021-08-21 06:22:11,804 - stpipe.master_background - WARNING - Skipping pathloss background updates 2021-08-21 06:22:24,115 - stpipe.master_background - INFO - Saved model in prism_sci_bkg_master_background.fits 2021-08-21 06:22:24,116 - stpipe.master_background - INFO - Step master_background done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_bkg_x1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/prism_sci_bkg_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0', 'user_background': 'prism_bkg_x1d.fits', 'save_background': False, 'force_subtract': False} DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_user0/prism_sci_bkg_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening prism_bkg_x1d.fits as <class 'jwst.datamodels.spec.SpecModel'> DEBUG stpipe.master_background:util.py:193 Opening prism_bkg_x1d.fits as <class 'jwst.datamodels.spec.SpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in prism_sci_bkg_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_user/prism_sci_bkg_master_background.fits HTTP/1.1" 200 153420480 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source] | 169.57 | |
|
rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..., 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_master_background.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") collect_pipeline_cfgs("config") args = ["config/master_background.cfg", rtdata.input, "--save_background=True"] Step.from_cmdline(args) rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_master_background.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/truth/ifu_prism_source_on_NRS1_master_background.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [641, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [642, 88]: E a> 2561 E ? ^ E b> 2560 E ? ^ E Data differs at [643, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [644, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [645, 88]: E a> 513 E b> 512 E Data differs at [646, 88]: E a> 513 E b> 512 E Data differs at [647, 88]: E a> 513 E b> 512 E Data differs at [648, 88]: E a> 513 E b> 512 E Data differs at [649, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [650, 88]: E a> 513 E b> 512 E ... E 24214 different pixels found (0.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6308aaba60>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:188: AssertionError -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:22:39,577 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:22:39,577 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:22:39,578 - stpipe - INFO - OS: Linux 2021-08-21 06:22:40,109 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). 2021-08-21 06:22:40,111 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0', 'user_background': None, 'save_background': True, 'force_subtract': False} 2021-08-21 06:22:50,405 - stpipe.master_background - INFO - Using exposure time as the weight. 2021-08-21 06:22:50,405 - stpipe.master_background - WARNING - There is no WCS in the input. 2021-08-21 06:22:50,416 - stpipe.master_background - INFO - Accumulating data from input spectrum 1 2021-08-21 06:24:56,058 - stpipe.master_background - INFO - Applying point source pathloss updates to IFU background 2021-08-21 06:24:56,059 - stpipe.master_background - WARNING - Pathloss_point array not found in input 2021-08-21 06:24:56,059 - stpipe.master_background - WARNING - Skipping pathloss background updates 2021-08-21 06:25:02,868 - stpipe.master_background - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2021-08-21 06:25:08,027 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2021-08-21 06:25:13,620 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2021-08-21 06:25:13,620 - stpipe.master_background - INFO - Step master_background done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/nirspec_spec3_asn.json',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:master_background_step.py:121 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_master_background.fits HTTP/1.1" 200 153417600 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[on-source2d] | 178.97 | |
|
rtdata = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} output_file = 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits' @pytest.mark.parametrize( 'output_file', ['ifu_prism_source_on_NRS1_master_background.fits', 'ifu_prism_source_off_NRS1_o001_masterbg1d.fits', 'ifu_prism_source_on_NRS1_o001_masterbg2d.fits'], ids=["on-source", "off-source", "on-source2d"] ) def test_nirspec_ifu_mbkg_nod(rtdata, fitsdiff_default_kwargs, output_file): """Test NIRSpec IFU prism nodded data.""" # Get input data rtdata.get_asn("nirspec/ifu/nirspec_spec3_asn.json") collect_pipeline_cfgs("config") args = ["config/master_background.cfg", rtdata.input, "--save_background=True"] Step.from_cmdline(args) rtdata.output = output_file # Get the truth file rtdata.get_truth(f"truth/test_nirspec_ifu_mbkg_nod/{output_file}") # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/truth/ifu_prism_source_on_NRS1_o001_masterbg2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 3 (DQ, 1): E E Data contains differences: E Data differs at [641, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [642, 88]: E a> 2561 E ? ^ E b> 2560 E ? ^ E Data differs at [643, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [644, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [645, 88]: E a> 513 E b> 512 E Data differs at [646, 88]: E a> 513 E b> 512 E Data differs at [647, 88]: E a> 513 E b> 512 E Data differs at [648, 88]: E a> 513 E b> 512 E Data differs at [649, 88]: E a> 4609 E ? ^ E b> 4608 E ? ^ E Data differs at [650, 88]: E a> 513 E b> 512 E ... E 24214 different pixels found (0.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f630842fb50>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py:188: AssertionError -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:28:27,718 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:28:27,718 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:28:27,718 - stpipe - INFO - OS: Linux 2021-08-21 06:28:28,437 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). 2021-08-21 06:28:28,439 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1', 'user_background': None, 'save_background': True, 'force_subtract': False} 2021-08-21 06:28:40,477 - stpipe.master_background - INFO - Using exposure time as the weight. 2021-08-21 06:28:40,477 - stpipe.master_background - WARNING - There is no WCS in the input. 2021-08-21 06:28:40,489 - stpipe.master_background - INFO - Accumulating data from input spectrum 1 2021-08-21 06:30:50,775 - stpipe.master_background - INFO - Applying point source pathloss updates to IFU background 2021-08-21 06:30:50,776 - stpipe.master_background - WARNING - Pathloss_point array not found in input 2021-08-21 06:30:50,776 - stpipe.master_background - WARNING - Skipping pathloss background updates 2021-08-21 06:30:57,673 - stpipe.master_background - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2021-08-21 06:31:03,020 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2021-08-21 06:31:08,783 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2021-08-21 06:31:08,784 - stpipe.master_background - INFO - Step master_background done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/nirspec_spec3_asn.json',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_on_s1/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:master_background_step.py:121 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_on_NRS1_o001_masterbg2d.fits HTTP/1.1" 200 153417600 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[extract_2d] | 0.45 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...: 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'extract_2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307c34580>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits HTTP/1.1" 200 4728960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[wavecorr] | 0.45 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...e': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'wavecorr' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368b12220>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits HTTP/1.1" 200 4731840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[flat_field] | 0.45 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...: 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 26 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 27 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 28 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 31 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 33 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 34 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 35 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367f67df0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits HTTP/1.1" 200 5454720 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[srctype] | 0.44 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...te': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'srctype' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 8 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 14 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 15 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 16 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 17 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 20 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 21 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 23 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 24 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 25 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 26 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 27 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 28 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 29 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 30 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63690f5d30>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits HTTP/1.1" 200 4728960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[pathloss] | 0.54 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...e': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'pathloss' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 9 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 16 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 17 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 18 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 19 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 23 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 24 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 25 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 26 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 27 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 28 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 29 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 30 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 31 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 32 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 33 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 34 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 35 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 36 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 37 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 38 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 39 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 40 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 41 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 42 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 43 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6356622400>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits HTTP/1.1" 200 6652800 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[barshadow] | 0.48 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'barshadow' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 9 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 23 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 24 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 25 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 26 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 27 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 28 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 29 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 30 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 31 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 33 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 43 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 44 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 45 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 46 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 48 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367f67400>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits HTTP/1.1" 200 7378560 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[cal] | 0.60 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 2 (DQ, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 3 (ERR, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 4 (WAVELENGTH, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 5 (BARSHADOW, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 6 (VAR_POISSON, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 7 (VAR_RNOISE, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 8 (VAR_FLAT, 1): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1152 x 27 E b: 1152 x 26 E No further data comparison performed. E E Extension HDU 9 (SCI, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 10 (DQ, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 11 (ERR, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 12 (WAVELENGTH, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 13 (BARSHADOW, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 14 (VAR_POISSON, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 15 (VAR_RNOISE, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 16 (VAR_FLAT, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 17 (PATHLOSS_PS, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 18 (PATHLOSS_UN, 2): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1351 x 29 E b: 1351 x 28 E No further data comparison performed. E E Extension HDU 19 (SCI, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 20 (DQ, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 21 (ERR, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 22 (WAVELENGTH, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 23 (BARSHADOW, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 24 (VAR_POISSON, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 25 (VAR_RNOISE, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 26 (VAR_FLAT, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 27 (PATHLOSS_PS, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 28 (PATHLOSS_UN, 3): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 29 E b> 28 E E Data contains differences: E Data dimensions differ: E a: 1378 x 29 E b: 1378 x 28 E No further data comparison performed. E E Extension HDU 29 (SCI, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 30 (DQ, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 31 (ERR, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 32 (WAVELENGTH, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 33 (BARSHADOW, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 34 (VAR_POISSON, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 35 (VAR_RNOISE, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 36 (VAR_FLAT, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 37 (PATHLOSS_PS, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 38 (PATHLOSS_UN, 4): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 27 E b> 26 E E Data contains differences: E Data dimensions differ: E a: 1174 x 27 E b: 1174 x 26 E No further data comparison performed. E E Extension HDU 39 (SCI, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 40 (DQ, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 41 (ERR, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 42 (WAVELENGTH, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 43 (BARSHADOW, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 44 (VAR_POISSON, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 45 (VAR_RNOISE, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 46 (VAR_FLAT, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 47 (PATHLOSS_PS, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E Extension HDU 48 (PATHLOSS_UN, 5): E E Headers contain differences: E Keyword NAXIS2 has different values: E a> 28 E b> 27 E E Data contains differences: E Data dimensions differ: E a: 1433 x 28 E b: 1433 x 27 E No further data comparison performed. E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63686e7250>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits HTTP/1.1" 200 7395840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[s2d] | 0.42 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits'} fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 's2d' @pytest.mark.bigdata @pytest.mark.parametrize("suffix", [ "assign_wcs", "msa_flagging", "extract_2d", "wavecorr", "flat_field", "srctype", "pathloss", "barshadow", "cal", "s2d", "x1d"]) def test_nirspec_mos_spec2(run_pipeline, fitsdiff_default_kwargs, suffix): """Regression test of the calwebb_spec2 pipeline on a NIRSpec MOS exposure.""" # Run the pipeline and retrieve outputs rtdata = run_pipeline output = f"f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_{suffix}.fits" rtdata.output = output # Get the truth files rtdata.get_truth("truth/test_nirspec_mos_spec2/" + output) # Compare the results diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/truth/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1846 E ? ^ E b> 1847 E ? ^ E E Extension HDU 8 (SCI, 2): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1615 E ? ^ E b> 1616 E ? ^ E E Extension HDU 15 (SCI, 3): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 29 E b> 28 E Keyword SLTSTRT2 has different values: E a> 1475 E ? ^ E b> 1476 E ? ^ E E Extension HDU 22 (SCI, 4): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 27 E b> 26 E Keyword SLTSTRT2 has different values: E a> 1656 E ? ^ E b> 1657 E ? ^ E E Extension HDU 29 (SCI, 5): E E Headers contain differences: E Keyword SLTSIZE2 has different values: E a> 28 E b> 27 E Keyword SLTSTRT2 has different values: E a> 708 E b> 709 E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6355b75be0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py:57: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits HTTP/1.1" 200 3133440 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-s2d] | 0.68 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00000' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7874 different pixels found (28.11% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7873 different pixels found (28.10% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7856 different pixels found (28.04% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [1, 8]: E a> nan E b> 0.0 E Data differs at [2, 8]: E a> nan E b> 0.0 E Data differs at [3, 8]: E a> nan E b> 0.0 E Data differs at [4, 8]: E a> nan E b> 0.0 E Data differs at [5, 8]: E a> nan E b> 0.0 E Data differs at [6, 8]: E a> nan E b> 0.0 E Data differs at [7, 8]: E a> nan E b> 0.0 E Data differs at [8, 8]: E a> nan E b> 0.0 E Data differs at [9, 8]: E a> nan E b> 0.0 E Data differs at [10, 8]: E a> nan E b> 0.0 E ... E 7855 different pixels found (28.04% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6356246e20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 990720 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-s2d] | 0.75 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 21598 different pixels found (64.15% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 21575 different pixels found (64.08% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 20726 different pixels found (61.56% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 18715 different pixels found (55.58% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f62fc0789a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-x1d] | 0.20 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00227' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...7748 additional difference(s) found. E ... E 7758 different table data element(s) found (33.28% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6355d1e520>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-crf] | 0.45 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits'} suffix = 'crf', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 2 (DQ, 1): E E Data contains differences: E Data differs at [611, 21]: E a> 33554432 E ? ^^ E b> 33554449 E ? ^^ E 1 different pixels found (0.00% different). E E Extension HDU 10 (DQ, 2): E E Data contains differences: E Data differs at [732, 15]: E a> 34078721 E ? ^^ E b> 34078737 E ? ^^ E 1 different pixels found (0.00% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f632a5e7430>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4587840 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-s2d] | 0.57 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 1 (SCI, 1): E E Data contains differences: E Data differs at [611, 14]: E a> 186.4526 E b> 186.76375 E Data differs at [612, 14]: E a> 185.1949 E b> 186.1065 E Data differs at [611, 15]: E a> 119.78825 E b> 125.61985 E Data differs at [612, 15]: E a> 93.1466 E b> 112.163315 E 4 different pixels found (0.01% different). E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 19448 different pixels found (55.82% different). E E Extension HDU 3 (WHT, 1): E E Data contains differences: E Data differs at [611, 14]: E a> 103.00755 E b> 102.83631 E Data differs at [612, 14]: E a> 103.868866 E b> 103.3612 E Data differs at [611, 15]: E a> 13.6098385 E b> 12.980075 E Data differs at [612, 15]: E a> 9.937675 E b> 8.2588825 E 4 different pixels found (0.01% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 18903 different pixels found (54.26% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 17736 different pixels found (50.91% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E ... E 15469 different pixels found (44.40% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367c99a90>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1192320 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-x1d] | 0.20 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00279' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX data differs in row 610: E a> 416848245.4419136 E b> 422990983.78419876 E Column FLUX data differs in row 611: E a> 387624299.76463324 E b> 407552621.6030122 E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E ...3998 additional difference(s) found. E ... E 4008 different table data element(s) found (16.62% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6366e609a0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 264960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-s2d] | 0.67 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 21960 different pixels found (65.02% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 20360 different pixels found (60.28% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 20545 different pixels found (60.83% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 10784 different pixels found (31.93% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6356b09640>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-x1d] | 0.20 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00443' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...3881 additional difference(s) found. E ... E 3891 different table data element(s) found (16.64% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f632a24ca90>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 259200 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-s2d] | 0.54 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 15793 different pixels found (46.91% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 15782 different pixels found (46.87% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 13038 different pixels found (38.72% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [1, 1]: E a> nan E b> 0.0 E Data differs at [2, 1]: E a> nan E b> 0.0 E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E ... E 11093 different pixels found (32.95% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6357183b20>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1163520 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-x1d] | 0.20 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's00482' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...7734 additional difference(s) found. E ... E 7744 different table data element(s) found (33.22% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63679a4490>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 256320 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-s2d] | 0.58 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits'} suffix = 's2d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-05, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 1e-05 E E Extension HDU 2 (ERR, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 23833 different pixels found (63.88% different). E E Extension HDU 5 (VAR_POISSON, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 21852 different pixels found (58.57% different). E E Extension HDU 6 (VAR_RNOISE, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 22553 different pixels found (60.45% different). E E Extension HDU 7 (VAR_FLAT, 1): E E Data contains differences: E Data differs at [3, 1]: E a> nan E b> 0.0 E Data differs at [4, 1]: E a> nan E b> 0.0 E Data differs at [5, 1]: E a> nan E b> 0.0 E Data differs at [6, 1]: E a> nan E b> 0.0 E Data differs at [7, 1]: E a> nan E b> 0.0 E Data differs at [8, 1]: E a> nan E b> 0.0 E Data differs at [9, 1]: E a> nan E b> 0.0 E Data differs at [10, 1]: E a> nan E b> 0.0 E Data differs at [11, 1]: E a> nan E b> 0.0 E Data differs at [12, 1]: E a> nan E b> 0.0 E ... E 10915 different pixels found (29.25% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368c80ac0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits HTTP/1.1" 200 1255680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-x1d] | 0.19 | |
|
run_pipeline = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits'} suffix = 'x1d', source_id = 's02315' fitsdiff_default_kwargs = {'atol': 1e-07, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} @pytest.mark.bigdata @pytest.mark.parametrize("suffix", ["cal", "crf", "s2d", "x1d"]) @pytest.mark.parametrize("source_id", ["s00000", "s00227", "s00279", "s00443", "s00482", "s02315"]) def test_nirspec_mos_spec3(run_pipeline, suffix, source_id, fitsdiff_default_kwargs): """Check results of calwebb_spec3""" rtdata = run_pipeline output = f"jw00626-o030_{source_id}_nirspec_f170lp-g235m_{suffix}.fits" rtdata.output = output rtdata.get_truth(f"truth/test_nirspec_mos_spec3/{output}") # Adjust tolerance for machine precision with float32 drizzle code if suffix == "s2d": fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-5 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/truth/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 1e-05, Absolute tolerance: 1e-07 E E Extension HDU 1 (EXTRACT1D, 1): E E Data contains differences: E Column FLUX_ERROR data differs in row 0: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 1: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 2: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 3: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 4: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 5: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 6: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 7: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 8: E a> nan E b> 0.0 E Column FLUX_ERROR data differs in row 9: E a> nan E b> 0.0 E ...4286 additional difference(s) found. E ... E 4296 different table data element(s) found (16.63% different). E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6368baef70>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py:40: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 276480 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dq_init] | 32.10 | |
|
run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...verify_nrs1_dq_init.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'dq_init' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_dq_init.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_dq_init.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f62fc0780d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -----------------------------Captured stderr setup------------------------------ 2021-08-21 06:36:59,100 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf 2021-08-21 06:36:59,114 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created. 2021-08-21 06:36:59,114 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2021-08-21 06:36:59,115 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created. 2021-08-21 06:36:59,116 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created. 2021-08-21 06:36:59,116 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created. 2021-08-21 06:36:59,117 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created. 2021-08-21 06:36:59,118 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created. 2021-08-21 06:36:59,119 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created. 2021-08-21 06:36:59,119 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2021-08-21 06:36:59,120 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created. 2021-08-21 06:36:59,121 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created. 2021-08-21 06:36:59,121 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2021-08-21 06:36:59,122 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created. 2021-08-21 06:36:59,123 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created. 2021-08-21 06:36:59,124 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created. 2021-08-21 06:36:59,124 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2021-08-21 06:36:59,125 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2021-08-21 06:36:59,125 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:36:59,125 - stpipe - INFO - OS: Linux 2021-08-21 06:36:59,248 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits',). 2021-08-21 06:36:59,256 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}}} 2021-08-21 06:36:59,406 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'nrs_verify_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] 2021-08-21 06:36:59,415 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. 2021-08-21 06:36:59,417 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. 2021-08-21 06:36:59,419 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. 2021-08-21 06:36:59,420 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. 2021-08-21 06:36:59,422 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'. 2021-08-21 06:36:59,422 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. 2021-08-21 06:36:59,424 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. 2021-08-21 06:36:59,426 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2021-08-21 06:36:59,426 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2021-08-21 06:36:59,426 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. 2021-08-21 06:36:59,427 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. 2021-08-21 06:36:59,429 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'. 2021-08-21 06:36:59,429 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'. 2021-08-21 06:36:59,429 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ... 2021-08-21 06:36:59,712 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). 2021-08-21 06:36:59,713 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:36:59,804 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed 2021-08-21 06:36:59,805 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped 2021-08-21 06:36:59,806 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done 2021-08-21 06:36:59,914 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). 2021-08-21 06:36:59,915 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:36:59,933 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits 2021-08-21 06:37:00,586 - stpipe.Detector1Pipeline.dq_init - INFO - Saved model in nrs_verify_nrs1_dq_init.fits 2021-08-21 06:37:00,586 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done 2021-08-21 06:37:00,697 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dq_init.fits>,). 2021-08-21 06:37:00,697 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:00,716 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits 2021-08-21 06:37:01,222 - stpipe.Detector1Pipeline.saturation - INFO - Detected 253780 saturated pixels 2021-08-21 06:37:01,240 - stpipe.Detector1Pipeline.saturation - INFO - Detected 128 A/D floor pixels 2021-08-21 06:37:01,531 - stpipe.Detector1Pipeline.saturation - INFO - Saved model in nrs_verify_nrs1_saturation.fits 2021-08-21 06:37:01,531 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done 2021-08-21 06:37:01,665 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). 2021-08-21 06:37:01,666 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:01,666 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped. 2021-08-21 06:37:01,667 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done 2021-08-21 06:37:01,769 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). 2021-08-21 06:37:01,770 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:01,789 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits 2021-08-21 06:37:02,488 - stpipe.Detector1Pipeline.superbias - INFO - Saved model in nrs_verify_nrs1_superbias.fits 2021-08-21 06:37:02,488 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done 2021-08-21 06:37:02,611 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_superbias.fits>,). 2021-08-21 06:37:02,612 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2021-08-21 06:37:02,630 - stpipe.Detector1Pipeline.refpix - INFO - Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits 2021-08-21 06:37:13,135 - stpipe.Detector1Pipeline.refpix - INFO - Saved model in nrs_verify_nrs1_refpix.fits 2021-08-21 06:37:13,135 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done 2021-08-21 06:37:13,438 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_refpix.fits>,). 2021-08-21 06:37:13,439 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:13,459 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits 2021-08-21 06:37:13,604 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored 2021-08-21 06:37:14,244 - stpipe.Detector1Pipeline.linearity - INFO - Saved model in nrs_verify_nrs1_linearity.fits 2021-08-21 06:37:14,245 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done 2021-08-21 06:37:14,369 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_linearity.fits>,). 2021-08-21 06:37:14,370 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None} 2021-08-21 06:37:14,432 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits 2021-08-21 06:37:19,566 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=2, nframes=1, groupgap=0 2021-08-21 06:37:19,567 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=65, nframes=1, groupgap=0 2021-08-21 06:37:20,335 - stpipe.Detector1Pipeline.dark_current - INFO - Saved model in nrs_verify_nrs1_dark_current.fits 2021-08-21 06:37:20,335 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done 2021-08-21 06:37:21,023 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dark_current.fits>,). 2021-08-21 06:37:21,024 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} 2021-08-21 06:37:21,047 - stpipe.Detector1Pipeline.jump - WARNING - Cannot apply jump detection when NGROUPS<=2; 2021-08-21 06:37:21,047 - stpipe.Detector1Pipeline.jump - WARNING - Jump step will be skipped 2021-08-21 06:37:21,344 - stpipe.Detector1Pipeline.jump - INFO - Saved model in nrs_verify_nrs1_jump.fits 2021-08-21 06:37:21,344 - stpipe.Detector1Pipeline.jump - INFO - Step jump done 2021-08-21 06:37:21,455 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_jump.fits>,). 2021-08-21 06:37:21,456 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} 2021-08-21 06:37:21,521 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits 2021-08-21 06:37:21,570 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits 2021-08-21 06:37:21,592 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols 2021-08-21 06:37:21,593 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal 2021-08-21 06:37:26,496 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 2 2021-08-21 06:37:26,496 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1 2021-08-21 06:37:26,699 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done 2021-08-21 06:37:26,834 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_jump.fits>,). 2021-08-21 06:37:26,835 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:26,888 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2021-08-21 06:37:26,901 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:37:27,018 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from nrs_verify_nrs1_jump.fits>,). 2021-08-21 06:37:27,019 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} 2021-08-21 06:37:27,074 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2021-08-21 06:37:27,086 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:37:27,226 - stpipe.Detector1Pipeline - INFO - Saved model in nrs_verify_nrs1_rateints.fits 2021-08-21 06:37:27,226 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1 2021-08-21 06:37:27,364 - stpipe.Detector1Pipeline - INFO - Saved model in nrs_verify_nrs1_rate.fits 2021-08-21 06:37:27,364 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/nrs_verify_nrs1_uncal.fits HTTP/1.1" 200 26265600 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe.Detector1Pipeline:step.py:321 Detector1Pipeline instance created. INFO stpipe.Detector1Pipeline.group_scale:step.py:321 GroupScaleStep instance created. INFO stpipe.Detector1Pipeline.dq_init:step.py:321 DQInitStep instance created. INFO stpipe.Detector1Pipeline.saturation:step.py:321 SaturationStep instance created. INFO stpipe.Detector1Pipeline.ipc:step.py:321 IPCStep instance created. INFO stpipe.Detector1Pipeline.superbias:step.py:321 SuperBiasStep instance created. INFO stpipe.Detector1Pipeline.refpix:step.py:321 RefPixStep instance created. INFO stpipe.Detector1Pipeline.rscd:step.py:321 RscdStep instance created. INFO stpipe.Detector1Pipeline.firstframe:step.py:321 FirstFrameStep instance created. INFO stpipe.Detector1Pipeline.lastframe:step.py:321 LastFrameStep instance created. INFO stpipe.Detector1Pipeline.linearity:step.py:321 LinearityStep instance created. INFO stpipe.Detector1Pipeline.dark_current:step.py:321 DarkCurrentStep instance created. INFO stpipe.Detector1Pipeline.reset:step.py:321 ResetStep instance created. INFO stpipe.Detector1Pipeline.persistence:step.py:321 PersistenceStep instance created. INFO stpipe.Detector1Pipeline.jump:step.py:321 JumpStep instance created. INFO stpipe.Detector1Pipeline.ramp_fit:step.py:321 RampFitStep instance created. INFO stpipe.Detector1Pipeline.gain_scale:step.py:321 GainScaleStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Detector1Pipeline:step.py:367 Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits',). INFO stpipe.Detector1Pipeline:step.py:371 Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'}}} DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_uncal.fits as <class 'jwst.datamodels.level1b.Level1bModel'> DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'nrs_verify_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for PERSAT reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RESET reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RSCD reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPDENSITY reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPPARS reference file is 'N/A'. INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:fits_support.py:701 Input model type Level1bModel does not match the requested model <class 'jwst.datamodels.ramp.RampModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline:fits_support.py:701 Input model type Level1bModel does not match the requested model <class 'jwst.datamodels.ramp.RampModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure INFO stpipe.Detector1Pipeline.group_scale:step.py:367 Step group_scale running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). INFO stpipe.Detector1Pipeline.group_scale:step.py:371 Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:49 NFRAMES and FRMDIVSR are equal; correction not needed INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:50 Step will be skipped INFO stpipe.Detector1Pipeline.group_scale:step.py:470 Step group_scale done INFO stpipe.Detector1Pipeline.dq_init:step.py:367 Step dq_init running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_uncal.fits>,). INFO stpipe.Detector1Pipeline.dq_init:step.py:371 Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dq_init:dq_init_step.py:63 Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.dq_init:step.py:928 Saved model in nrs_verify_nrs1_dq_init.fits INFO stpipe.Detector1Pipeline.dq_init:step.py:470 Step dq_init done INFO stpipe.Detector1Pipeline.saturation:step.py:367 Step saturation running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dq_init.fits>,). INFO stpipe.Detector1Pipeline.saturation:step.py:371 Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.saturation:saturation_step.py:25 Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 253780 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 253780 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 128 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 128 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:step.py:928 Saved model in nrs_verify_nrs1_saturation.fits INFO stpipe.Detector1Pipeline.saturation:step.py:470 Step saturation done INFO stpipe.Detector1Pipeline.ipc:step.py:367 Step ipc running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). INFO stpipe.Detector1Pipeline.ipc:step.py:371 Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} INFO stpipe.Detector1Pipeline.ipc:step.py:401 Step skipped. INFO stpipe.Detector1Pipeline.ipc:step.py:470 Step ipc done INFO stpipe.Detector1Pipeline.superbias:step.py:367 Step superbias running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_saturation.fits>,). INFO stpipe.Detector1Pipeline.superbias:step.py:371 Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:superbias_step.py:27 Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:step.py:928 Saved model in nrs_verify_nrs1_superbias.fits INFO stpipe.Detector1Pipeline.superbias:step.py:470 Step superbias done INFO stpipe.Detector1Pipeline.refpix:step.py:367 Step refpix running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_superbias.fits>,). INFO stpipe.Detector1Pipeline.refpix:step.py:371 Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:36 Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3188 3189 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3188 3189 INFO stpipe.Detector1Pipeline.refpix:step.py:928 Saved model in nrs_verify_nrs1_refpix.fits INFO stpipe.Detector1Pipeline.refpix:step.py:470 Step refpix done INFO stpipe.Detector1Pipeline.linearity:step.py:367 Step linearity running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_refpix.fits>,). INFO stpipe.Detector1Pipeline.linearity:step.py:371 Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.linearity:linearity_step.py:23 Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.linearity:step.py:928 Saved model in nrs_verify_nrs1_linearity.fits INFO stpipe.Detector1Pipeline.linearity:step.py:470 Step linearity done INFO stpipe.Detector1Pipeline.dark_current:step.py:367 Step dark_current running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_linearity.fits>,). INFO stpipe.Detector1Pipeline.dark_current:step.py:371 Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'dark_output': None} DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:dark_current_step.py:28 Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=2, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=2, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=2, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=2, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:step.py:928 Saved model in nrs_verify_nrs1_dark_current.fits INFO stpipe.Detector1Pipeline.dark_current:step.py:470 Step dark_current done INFO stpipe.Detector1Pipeline.jump:step.py:367 Step jump running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_dark_current.fits>,). INFO stpipe.Detector1Pipeline.jump:step.py:371 Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". WARNING stpipe.Detector1Pipeline.jump:jump_step.py:36 Cannot apply jump detection when NGROUPS<=2; WARNING stpipe.Detector1Pipeline.jump:jump_step.py:37 Jump step will be skipped DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.jump:step.py:928 Saved model in nrs_verify_nrs1_jump.fits INFO stpipe.Detector1Pipeline.jump:step.py:470 Step jump done INFO stpipe.Detector1Pipeline.ramp_fit:step.py:367 Step ramp_fit running with args (<RampModel(1, 2, 3200, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.ramp_fit:step.py:371 Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=1 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 293551: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 293551: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -26394787840.000000, -6730.806641, 369509216.000000, 12928614.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -26394787840.000000, -6730.806641, 369509216.000000, 12928614.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (2, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (2, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 2048 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 4.816360 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 4.816360 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:step.py:470 Step ramp_fit done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<CubeModel(1, 2048, 2048) from nrs_verify_nrs1_jump.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline:step.py:928 Saved model in nrs_verify_nrs1_rateints.fits INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:step.py:928 Saved model in nrs_verify_nrs1_rate.fits INFO stpipe.Detector1Pipeline:step.py:470 Step Detector1Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dq_init.fits HTTP/1.1" 200 144247680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[saturation] | 2.61 | |
|
run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._nrs1_saturation.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'saturation' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_saturation.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_saturation.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636914e070>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_saturation.fits HTTP/1.1" 200 144247680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[superbias] | 2.93 | |
|
run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fy_nrs1_superbias.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'superbias' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_superbias.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_superbias.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636608a6d0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_superbias.fits HTTP/1.1" 200 144247680 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[refpix] | 1.65 | |
|
run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...s_verify_nrs1_refpix.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'refpix' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_refpix.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_refpix.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f62fd502370>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_refpix.fits HTTP/1.1" 200 92338560 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[linearity] | 1.57 | |
|
run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...fy_nrs1_linearity.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'linearity' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_linearity.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_linearity.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f636591ec40>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_linearity.fits HTTP/1.1" 200 92338560 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[dark_current] | 1.59 | |
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run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...1_dark_current.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'dark_current' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_dark_current.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_dark_current.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f633e189910>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_dark_current.fits HTTP/1.1" 200 92344320 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[jump] | 1.86 | |
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run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h/nrs_verify_nrs1_jump.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'jump' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_jump.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_jump.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6307b40af0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_jump.fits HTTP/1.1" 200 92344320 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_detector1[rate] | 1.65 | |
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run_detector1 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...h/nrs_verify_nrs1_rate.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'rate' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'dq_init', 'saturation', 'superbias', 'refpix', 'linearity', 'dark_current', 'jump', 'rate', ]) def test_verify_detector1(run_detector1, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_rate.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f6367c18ee0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:77: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_rate.fits HTTP/1.1" 200 83946240 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[assign_wcs] | 7.37 | |
|
run_image2 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._nrs1_assign_wcs.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'assign_wcs' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'assign_wcs', 'flat_field', 'cal', ]) def test_verify_image2(run_image2, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_assign_wcs.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_assign_wcs.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f632a58c610>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:96: AssertionError -----------------------------Captured stderr setup------------------------------ 2021-08-21 06:37:46,948 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created. 2021-08-21 06:37:46,949 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:37:46,950 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:37:46,951 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:37:46,952 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:37:46,953 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created. 2021-08-21 06:37:46,953 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:37:46,953 - stpipe - INFO - OS: Linux 2021-08-21 06:37:47,118 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits',). 2021-08-21 06:37:47,122 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}}} 2021-08-21 06:37:47,157 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'nrs_verify_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'disperser', 'distortion', 'drizpars', 'filteroffset', 'fore', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'specwcs', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:37:47,188 - stpipe.Image2Pipeline - INFO - Override for AREA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits'. 2021-08-21 06:37:47,188 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf'. 2021-08-21 06:37:47,190 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf'. 2021-08-21 06:37:47,191 - stpipe.Image2Pipeline - INFO - Override for DFLAT reference file is 'N/A'. 2021-08-21 06:37:47,191 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Override for FFLAT reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Override for FLAT reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_flat_0061.fits'. 2021-08-21 06:37:47,194 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Override for FPA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:37:47,196 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf'. 2021-08-21 06:37:47,197 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is 'N/A'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Override for SFLAT reference file is 'N/A'. 2021-08-21 06:37:47,199 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:37:47,200 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf'. 2021-08-21 06:37:47,201 - stpipe.Image2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:37:47,201 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ... 2021-08-21 06:37:47,202 - stpipe.Image2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 2021-08-21 06:37:47,202 - stpipe.Image2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits ... 2021-08-21 06:37:47,358 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_rate.fits>,). 2021-08-21 06:37:47,359 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:37:47,509 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1973863539999999 deg 2021-08-21 06:37:47,509 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.338891834 deg 2021-08-21 06:37:47,510 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_y correction: 0.00038973010203694256 deg 2021-08-21 06:37:47,510 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_x correction: -8.547146608108846e-05 deg 2021-08-21 06:37:47,621 - stpipe.Image2Pipeline.assign_wcs - INFO - Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. 2021-08-21 06:37:47,763 - stpipe.Image2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 06:37:47,977 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 2021-08-21 06:37:47,977 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 2021-08-21 06:37:47,977 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:37:48,228 - stpipe.Image2Pipeline.assign_wcs - INFO - Saved model in nrs_verify_nrs1_assign_wcs.fits 2021-08-21 06:37:48,229 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:37:48,347 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_assign_wcs.fits>,). 2021-08-21 06:37:48,348 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:37:48,354 - stpipe.Image2Pipeline.flat_field - WARNING - Exposure type is NRS_VERIFY; flat-fielding will be skipped because it is not currently supported for this mode. 2021-08-21 06:37:48,778 - stpipe.Image2Pipeline.flat_field - INFO - Saved model in nrs_verify_nrs1_flat_field.fits 2021-08-21 06:37:48,779 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:37:48,898 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_flat_field.fits>,). 2021-08-21 06:37:48,899 - stpipe.Image2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: N/A 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - WARNING - No PHOTOM reference file found 2021-08-21 06:37:48,914 - stpipe.Image2Pipeline.photom - WARNING - Photom step will be skipped 2021-08-21 06:37:49,341 - stpipe.Image2Pipeline.photom - INFO - Saved model in nrs_verify_nrs1_photom.fits 2021-08-21 06:37:49,342 - stpipe.Image2Pipeline.photom - INFO - Step photom done 2021-08-21 06:37:49,342 - stpipe.Image2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 2021-08-21 06:37:49,343 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2 2021-08-21 06:37:49,582 - stpipe.Image2Pipeline - INFO - Saved model in nrs_verify_nrs1_cal.fits 2021-08-21 06:37:49,582 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_fpa_0005.asdf HTTP/1.1" 200 3799 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_flat_0061.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jwst_nirspec_area_0001.fits HTTP/1.1" 200 33563520 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-IMAGE2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-IMAGE2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-IMAGE2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-IMAGE2PIPELINE reference files found. INFO stpipe.Image2Pipeline:step.py:321 Image2Pipeline instance created. INFO stpipe.Image2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Image2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Image2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Image2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Image2Pipeline.resample:step.py:321 ResampleStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Image2Pipeline:step.py:367 Step Image2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits',). INFO stpipe.Image2Pipeline:step.py:371 Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}}} DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Image2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'nrs_verify_nrs1_rate.fits' reftypes = ['camera', 'collimator', 'disperser', 'distortion', 'drizpars', 'filteroffset', 'fore', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'specwcs', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Image2Pipeline:pipeline.py:288 Override for AREA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for DFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for FFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for FLAT reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_flat_0061.fits'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for FPA reference file is '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Override for SFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Image2Pipeline:calwebb_image2.py:49 Starting calwebb_image2 ... INFO stpipe.Image2Pipeline:calwebb_image2.py:58 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 INFO stpipe.Image2Pipeline:calwebb_image2.py:125 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits ... DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Image2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Image2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_rate.fits>,). INFO stpipe.Image2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1973863539999999 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1973863539999999 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.338891834 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.338891834 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.00038973010203694256 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.00038973010203694256 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: -8.547146608108846e-05 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: -8.547146608108846e-05 deg DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:776 Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:776 Combination F140X_MIRROR missing in wavelengthrange file, setting order to -1 and range to [6e-07, 5.3e-06]. DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_verify pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0002.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0002.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0002.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0020.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0012.asdf', 'fpa': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0003.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0002.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:util.py:957 Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:util.py:957 Update S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:81 assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:81 assign_wcs updated S_REGION to POLYGON ICRS 119.866914036 -68.668366479 119.866915895 -68.668383185 119.866870421 -68.668383357 119.866869560 -68.668366722 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:step.py:928 Saved model in nrs_verify_nrs1_assign_wcs.fits INFO stpipe.Image2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Image2Pipeline.flat_field:step.py:367 Step flat_field running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_assign_wcs.fits>,). INFO stpipe.Image2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:72 Input is ImageModel of exposure type NRS_VERIFY WARNING stpipe.Image2Pipeline.flat_field:flat_field_step.py:78 Exposure type is NRS_VERIFY; flat-fielding will be skipped because it is not currently supported for this mode. DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.flat_field:step.py:928 Saved model in nrs_verify_nrs1_flat_field.fits INFO stpipe.Image2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Image2Pipeline.photom:step.py:367 Step photom running with args (<ImageModel(2048, 2048) from nrs_verify_nrs1_flat_field.fits>,). INFO stpipe.Image2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0', 'inverse': False, 'source_type': None} DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:photom_step.py:33 Input is ImageModel DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.photom:photom_step.py:52 Using photom reference file: N/A INFO stpipe.Image2Pipeline.photom:photom_step.py:53 Using area reference file: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/jwst_nirspec_area_0001.fits WARNING stpipe.Image2Pipeline.photom:photom_step.py:57 No PHOTOM reference file found WARNING stpipe.Image2Pipeline.photom:photom_step.py:58 Photom step will be skipped DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.photom:step.py:928 Saved model in nrs_verify_nrs1_photom.fits INFO stpipe.Image2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Image2Pipeline:calwebb_image2.py:164 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1 INFO stpipe.Image2Pipeline:calwebb_image2.py:80 ... ending calwebb_image2 INFO stpipe.Image2Pipeline:step.py:928 Saved model in nrs_verify_nrs1_cal.fits INFO stpipe.Image2Pipeline:step.py:470 Step Image2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_assign_wcs.fits HTTP/1.1" 200 84000960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[flat_field] | 1.50 | |
|
run_image2 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes..._nrs1_flat_field.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'flat_field' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'assign_wcs', 'flat_field', 'cal', ]) def test_verify_image2(run_image2, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_flat_field.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_flat_field.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f635759aa30>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:96: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_flat_field.fits HTTP/1.1" 200 84000960 | |||
| Failed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py::test_verify_image2[cal] | 1.50 | |
|
run_image2 = None rtdata_module = {'input': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/tes...uth/nrs_verify_nrs1_cal.fits', 'truth_remote': 'jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits'} fitsdiff_default_kwargs = {'atol': 0.001, 'ignore_fields': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], 'ignore_hdus': ['ASDF'], 'ignore_keywords': ['DATE', 'CAL_VER', 'CAL_VCS', 'CRDS_VER', 'CRDS_CTX', 'NAXIS1', ...], ...} suffix = 'cal' @pytest.mark.bigdata @pytest.mark.parametrize( 'suffix', [ 'assign_wcs', 'flat_field', 'cal', ]) def test_verify_image2(run_image2, rtdata_module, fitsdiff_default_kwargs, suffix): """Test results of the detector1 and image2 processing""" rtdata = rtdata_module output = f'{ROOT}_{suffix}.fits' rtdata.output = output rtdata.get_truth(f'truth/test_nirspec_verify/{output}') fitsdiff_default_kwargs["rtol"] = 1e-4 fitsdiff_default_kwargs["atol"] = 1e-3 diff = FITSDiff(rtdata.output, rtdata.truth, **fitsdiff_default_kwargs) > assert diff.identical, diff.report() E AssertionError: E fitsdiff: 4.3.1 E a: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/nrs_verify_nrs1_cal.fits E b: /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_verify_rtdata_module0/truth/nrs_verify_nrs1_cal.fits E HDU(s) not to be compared: E ASDF E Keyword(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Table column(s) not to be compared: E CAL_VCS CAL_VER CRDS_CTX CRDS_VER DATE NAXIS1 TFORM* E Maximum number of different data values to be reported: 10 E Relative tolerance: 0.0001, Absolute tolerance: 0.001 E E Extension HDU 1 (SCI, 1): E E Headers contain differences: E Keyword VELOSYS has different comments: E a> [m/s] Radial velocity wrt Barycenter E b> [m/s] Barycentric correction to radial velocity E E assert False E + where False = <astropy.io.fits.diff.FITSDiff object at 0x7f63663665e0>.identical /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_verify.py:96: AssertionError -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_verify/nrs_verify_nrs1_cal.fits HTTP/1.1" 200 84000960 | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[assign_wcs] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[cal] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[flat_field] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[imprint_subtract] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[msa_flagging] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[pathloss] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[photom] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[s3d] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[srctype] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec2.py::test_spec2[x1d] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[jw00626009002_02101_00001_nrs1_o009_crf.fits] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[jw00626009002_02101_00001_nrs2_o009_crf.fits] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[single_nrs1-nrs2_g395h-f290lp_s3d.fits] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_ifu_spec3.py::test_spec3_multi[single_nrs1-nrs2_g395h-f290lp_x1d.fits] | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_ff_inv | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_pathloss_corrpars | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_pathloss_inverse | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Skipped | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_pathloss_source_type | 0.00 | |
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('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/ci_watson/plugin.py', 63, 'Skipped: need --slow option to run') | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_nirspec_brightobj_spec2[assign_wcs] | 31.22 | |
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-----------------------------Captured stderr setup------------------------------ 2021-08-21 05:56:59,480 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 05:56:59,481 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 05:56:59,482 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 05:56:59,483 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 05:56:59,483 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 05:56:59,485 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 05:56:59,488 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 05:56:59,488 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:56:59,489 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:56:59,490 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:56:59,491 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 05:56:59,491 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 05:56:59,492 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:56:59,493 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 05:56:59,493 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 05:56:59,494 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 05:56:59,495 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:56:59,495 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:56:59,496 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 05:56:59,497 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 05:56:59,498 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 05:56:59,499 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 05:56:59,499 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 05:56:59,499 - stpipe - INFO - OS: Linux 2021-08-21 05:56:59,617 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits',). 2021-08-21 05:56:59,629 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 05:56:59,665 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw84600042001_02101_00001_nrs2_rateints.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 05:56:59,705 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2021-08-21 05:56:59,707 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits'. 2021-08-21 05:56:59,708 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2021-08-21 05:56:59,708 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 05:56:59,710 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 05:56:59,711 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 05:56:59,711 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2021-08-21 05:56:59,713 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf'. 2021-08-21 05:56:59,714 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 05:56:59,714 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 05:56:59,714 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json'. 2021-08-21 05:56:59,716 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. 2021-08-21 05:56:59,717 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 05:56:59,718 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 05:56:59,718 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 05:56:59,719 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 05:56:59,720 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 05:56:59,721 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 05:56:59,721 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 05:56:59,721 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 05:56:59,721 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 05:56:59,722 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 05:56:59,724 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 05:56:59,726 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2021-08-21 05:56:59,727 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2021-08-21 05:56:59,729 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 05:56:59,729 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 05:56:59,729 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits'. 2021-08-21 05:56:59,732 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 05:56:59,732 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. 2021-08-21 05:56:59,733 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 05:56:59,735 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 05:56:59,735 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 05:56:59,738 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 2021-08-21 05:56:59,738 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits ... 2021-08-21 05:56:59,898 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_rateints.fits>,). 2021-08-21 05:56:59,899 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 05:57:00,090 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139251918 deg 2021-08-21 05:57:00,090 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.355430037 deg 2021-08-21 05:57:00,091 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.0019674384812536673 deg 2021-08-21 05:57:00,091 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 05:57:00,260 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS2: ['S1600A1'] 2021-08-21 05:57:00,260 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 1 open slitlets 2021-08-21 05:57:00,287 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.139251918 deg 2021-08-21 05:57:00,287 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.355430037 deg 2021-08-21 05:57:00,287 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.0019674384812536673 deg 2021-08-21 05:57:00,288 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 05:57:00,297 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 05:57:00,415 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2021-08-21 05:57:00,415 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 05:57:00,415 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2021-08-21 05:57:00,416 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2021-08-21 05:57:00,416 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 5 2021-08-21 05:57:00,571 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_brightobj pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 05:57:00,678 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 05:57:01,032 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw84600042001_02101_00001_nrs2_assign_wcs.fits 2021-08-21 05:57:01,032 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 05:57:01,143 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). 2021-08-21 05:57:01,144 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 05:57:01,144 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 05:57:01,145 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 05:57:01,251 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). 2021-08-21 05:57:01,252 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} 2021-08-21 05:57:01,252 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 05:57:01,253 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 05:57:01,360 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). 2021-08-21 05:57:01,361 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} 2021-08-21 05:57:01,361 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2021-08-21 05:57:01,362 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 05:57:01,498 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). 2021-08-21 05:57:01,499 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 05:57:01,518 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_BRIGHTOBJ 2021-08-21 05:57:01,621 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S1600A1 2021-08-21 05:57:01,621 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2021-08-21 05:57:01,622 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 0 36 2021-08-21 05:57:01,891 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 05:57:01,899 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 2021-08-21 05:57:01,899 - stpipe.Spec2Pipeline.extract_2d - INFO - extract_2d updated S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 2021-08-21 05:57:02,121 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw84600042001_02101_00001_nrs2_extract_2d.fits 2021-08-21 05:57:02,121 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 05:57:02,253 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). 2021-08-21 05:57:02,254 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} 2021-08-21 05:57:02,349 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_BRIGHTOBJ 2021-08-21 05:57:02,349 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2021-08-21 05:57:02,349 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2021-08-21 05:57:02,349 - stpipe.Spec2Pipeline.srctype - INFO - Input is a TSO exposure; setting SRCTYPE = POINT 2021-08-21 05:57:02,351 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 05:57:02,468 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). 2021-08-21 05:57:02,471 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}} 2021-08-21 05:57:02,471 - stpipe.Spec2Pipeline.master_background - INFO - Step skipped. 2021-08-21 05:57:02,472 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 05:57:02,577 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). 2021-08-21 05:57:02,578 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} 2021-08-21 05:57:02,770 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf 2021-08-21 05:57:02,944 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit S1600A1 2021-08-21 05:57:02,945 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 05:57:03,145 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture S1600A1 2021-08-21 05:57:03,372 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jw84600042001_02101_00001_nrs2_wavecorr.fits 2021-08-21 05:57:03,372 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 05:57:03,499 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_wavecorr.fits>,). 2021-08-21 05:57:03,500 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 05:57:15,210 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw84600042001_02101_00001_nrs2_flat_field.fits 2021-08-21 05:57:15,210 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 05:57:15,327 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). 2021-08-21 05:57:15,328 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 05:57:15,328 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped. 2021-08-21 05:57:15,329 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 05:57:15,430 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). 2021-08-21 05:57:15,431 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 05:57:15,431 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2021-08-21 05:57:15,432 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 05:57:15,528 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). 2021-08-21 05:57:15,529 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 05:57:15,824 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2021-08-21 05:57:15,824 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits 2021-08-21 05:57:15,997 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 05:57:15,997 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS2 2021-08-21 05:57:15,997 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_BRIGHTOBJ 2021-08-21 05:57:15,997 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2021-08-21 05:57:15,997 - stpipe.Spec2Pipeline.photom - INFO - grating: G235H 2021-08-21 05:57:16,073 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S1600A1 2021-08-21 05:57:16,073 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 05:57:16,307 - stpipe.Spec2Pipeline.photom - INFO - Saved model in jw84600042001_02101_00001_nrs2_photom.fits 2021-08-21 05:57:16,307 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 05:57:16,445 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_calints.fits>,). 2021-08-21 05:57:16,446 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1dints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 05:57:16,632 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json 2021-08-21 05:57:16,729 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2021-08-21 05:57:16,866 - stpipe.Spec2Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 05:57:16,866 - stpipe.Spec2Pipeline.extract_1d - INFO - Beginning loop over 3 integrations ... 2021-08-21 05:57:16,869 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 05:57:16,869 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=2047, ystart=12.5, ystop=18.5 2021-08-21 05:57:17,200 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 05:57:20,747 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 05:57:24,260 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 05:57:27,412 - stpipe.Spec2Pipeline.extract_1d - INFO - All 3 integrations done 2021-08-21 05:57:27,413 - stpipe.Spec2Pipeline.extract_1d - WARNING - INTSTART not found; assuming a value of 1. 2021-08-21 05:57:27,413 - stpipe.Spec2Pipeline.extract_1d - WARNING - INTEND not found; assuming a value of 3. 2021-08-21 05:57:27,413 - stpipe.Spec2Pipeline.extract_1d - WARNING - There is no INT_TIMES table in the input file. 2021-08-21 05:57:27,549 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw84600042001_02101_00001_nrs2_x1dints.fits 2021-08-21 05:57:27,549 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 05:57:27,549 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 2021-08-21 05:57:27,549 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 05:57:27,776 - stpipe.Spec2Pipeline - INFO - Saved model in jw84600042001_02101_00001_nrs2_calints.fits 2021-08-21 05:57:27,776 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/jw84600042001_02101_00001_nrs2_rateints.fits HTTP/1.1" 200 2407680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/jw84600042001_02101_00001_nrs2_rateints.fits HTTP/1.1" 200 2407680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/jw84600042001_02101_00001_nrs2_rateints.fits HTTP/1.1" 200 2407680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/jw84600042001_02101_00001_nrs2_rateints.fits HTTP/1.1" 200 2407680 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits as <class 'jwst.datamodels.cube.CubeModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits as <class 'jwst.datamodels.cube.CubeModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits as <class 'jwst.datamodels.cube.CubeModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits as <class 'jwst.datamodels.cube.CubeModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw84600042001_02101_00001_nrs2_rateints.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits as <class 'jwst.datamodels.cube.CubeModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2_rateints.fits as <class 'jwst.datamodels.cube.CubeModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:342 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:357 Science data does not allow pathloss correction. Skipping "pathloss". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:362 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_rateints.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS2: ['S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS2: ['S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 1 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.139251918 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.355430037 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.0019674384812536673 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_brightobj pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_brightobj pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in jw84600042001_02101_00001_nrs2_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<CubeModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 0 36 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 0 36 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:233 TSO data, so copying the INT_TIMES table. DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:233 TSO data, so copying the INT_TIMES table. DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is CubeModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is CubeModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:59 extract_2d updated S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:59 extract_2d updated S_REGION to POLYGON ICRS 6.128994996 -66.598017993 6.128176427 -66.597649726 6.127338445 -66.597948693 6.128156927 -66.598317005 INFO stpipe.Spec2Pipeline.extract_2d:step.py:928 Saved model in jw84600042001_02101_00001_nrs2_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:79 Input is a TSO exposure; setting SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:79 Input is a TSO exposure; setting SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit S1600A1 INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture S1600A1 INFO stpipe.Spec2Pipeline.wavecorr:step.py:928 Saved model in jw84600042001_02101_00001_nrs2_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is SlitModel of exposure type NRS_BRIGHTOBJ DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1821 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1821 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1828 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1828 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1844 9 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1844 9 flat-field values <= 0 INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in jw84600042001_02101_00001_nrs2_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is SlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_BRIGHTOBJ INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235H INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235H DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0025.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:226 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:226 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:928 Saved model in jw84600042001_02101_00001_nrs2_photom.fits INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(3, 32, 2048) from jw84600042001_02101_00001_nrs2_calints.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1dints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0006.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3374 Beginning loop over 3 integrations ... INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3374 Beginning loop over 3 integrations ... DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[12.0], [19.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[12.0], [19.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=12.5, ystop=18.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=12.5, ystop=18.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3511 All 3 integrations done INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3511 All 3 integrations done WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3571 INTSTART not found; assuming a value of 1. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3571 INTSTART not found; assuming a value of 1. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3578 INTEND not found; assuming a value of 3. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3578 INTEND not found; assuming a value of 3. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3594 There is no INT_TIMES table in the input file. WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:3594 There is no INT_TIMES table in the input file. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in jw84600042001_02101_00001_nrs2_x1dints.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_brightobj_run_tso_spec2_pipeline0/jw84600042001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw84600042001_02101_00001_nrs2_calints.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2485440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2485440 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2485440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/jw84600042001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2485440 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_flat_field_step_user_supplied_flat | 2.50 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 05:57:31,569 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 05:57:31,672 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits',). 2021-08-21 05:57:31,673 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits', 'inverse': False} 2021-08-21 05:57:31,982 - stpipe.FlatFieldStep - INFO - User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits given. Ignoring all flat reference files and flat creation. 2021-08-21 05:57:32,565 - stpipe.FlatFieldStep - INFO - Pre-computed flat <ImageModel(32, 2048) from nrs2_interpolatedflat.fits> provided. Using the flat directly 2021-08-21 05:57:32,572 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_interpolatedflat.fits HTTP/1.1" 200 1169280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_interpolatedflat.fits HTTP/1.1" 200 1169280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_interpolatedflat.fits HTTP/1.1" 200 1169280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_interpolatedflat.fits HTTP/1.1" 200 1169280 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits as <class 'jwst.datamodels.slit.SlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits as <class 'jwst.datamodels.slit.SlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits',). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits as <class 'jwst.datamodels.slit.SlitModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_wavecorr.fits as <class 'jwst.datamodels.slit.SlitModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is SlitModel of exposure type NRS_BRIGHTOBJ INFO stpipe.FlatFieldStep:flat_field_step.py:94 User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp0/nrs2_interpolatedflat.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:481 Pre-computed flat <ImageModel(32, 2048) from nrs2_interpolatedflat.fits> provided. Using the flat directly INFO stpipe.FlatFieldStep:flat_field.py:481 Pre-computed flat <ImageModel(32, 2048) from nrs2_interpolatedflat.fits> provided. Using the flat directly INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5929920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5929920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5929920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_brightobj_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5929920 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_brightobj.py::test_ff_inv | 20.75 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 05:57:34,067 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 05:57:34,186 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). 2021-08-21 05:57:34,187 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 05:57:43,697 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2021-08-21 05:57:43,992 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 05:57:44,102 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). 2021-08-21 05:57:44,103 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 05:57:53,917 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/tso/nrs2_wavecorr.fits HTTP/1.1" 200 5129280 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_ff_inv0/nrs2_wavecorr.fits as <class 'jwst.datamodels.slit.SlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_ff_inv0/nrs2_wavecorr.fits as <class 'jwst.datamodels.slit.SlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is SlitModel of exposure type NRS_BRIGHTOBJ DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:1821 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1821 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1828 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1828 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1217 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1217 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1844 9 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:1844 9 flat-field values <= 0 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<SlitModel(3, 32, 2048) from nrs2_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is SlitModel of exposure type NRS_BRIGHTOBJ DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0049.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:1821 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1821 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1828 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1828 Number of NaNs in wavelength array = 31454 out of 65536 DEBUG stpipe.FlatFieldStep:flat_field.py:1217 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1217 The table wavelength or flat-field data array contained 9257 NaNs; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1844 9 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:1844 9 flat-field values <= 0 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_missing_msa_fail | 2.57 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stdout call------------------------------ ---------------------------------------------------------------------- ERROR RUNNING STEP 'Spec2Pipeline': Traceback (most recent call last): File "/data1/jenkins/workspac e/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/en vs/jwst_validation_notebooks/lib/python3.8/site- packages/jwst/assign_wcs/nirspec.py", line 564, in get_open_msa_slits msa_file = fits.open(msa_file, memmap=False) File "/data1/jenkins/workspace/Notebooks/jwst_vali dation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_no tebooks/lib/python3.8/site- packages/astropy/io/fits/hdu/hdulist.py", line 173, in fitsopen return HDUList.fromfile(name, mode, memmap, save_backup, cache, File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks _spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/pyth on3.8/site-packages/astropy/io/fits/hdu/hdulist.py", line 408, in fromfile return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, File "/data1/jenkins/workspace/Notebooks/jwst_val idation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_n otebooks/lib/python3.8/site- packages/astropy/io/fits/hdu/hdulist.py", line 1064, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks _spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/pyth on3.8/site-packages/astropy/utils/decorators.py", line 536, in wrapper return function(*args, **kwargs) File "/data1/jenkin s/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/min iconda3/envs/jwst_validation_notebooks/lib/python3.8/site- packages/astropy/io/fits/file.py", line 170, in __init__ self._open_filename(fileobj, mode, overwrite) File "/data1/jenki ns/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/mi niconda3/envs/jwst_validation_notebooks/lib/python3.8/site- packages/astropy/io/fits/file.py", line 558, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File " /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_space telescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/ site-packages/astropy/io/fits/util.py", line 390, in fileobj_open return open(filename, mode, buffering=0) FileNotFoundError: [Errno 2] No such file or directory: '/data1/jenkins/workspace/Notebooks/ jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest -4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/data1/jenki ns/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/mi niconda3/envs/jwst_validation_notebooks/lib/python3.8/site- packages/jwst/pipeline/calwebb_spec2.py", line 113, in process result = self.process_exposure_product( File "/data1/jenkins/wor kspace/Notebooks/jwst_validation_notebooks_spacetelescope/minicond a3/envs/jwst_validation_notebooks/lib/python3.8/site- packages/jwst/pipeline/calwebb_spec2.py", line 229, in process_exposure_product raise assign_wcs_exception File "/d ata1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacete lescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/si te-packages/jwst/pipeline/calwebb_spec2.py", line 213, in process_exposure_product calibrated = self.assign_wcs(science) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks _spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/pyth on3.8/site-packages/stpipe/step.py", line 407, in run step_result = self.process(*args) File "/data1/jenkins/workspace /Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/env s/jwst_validation_notebooks/lib/python3.8/site- packages/jwst/assign_wcs/assign_wcs_step.py", line 94, in process result = load_wcs(input_model, reference_file_names, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks _spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/pyth on3.8/site-packages/jwst/assign_wcs/assign_wcs.py", line 52, in load_wcs pipeline = mod.create_pipeline(input_model, reference_files, slit_y_range=nrs_slit_y_range) File "/data1/jen kins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/ miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site- packages/jwst/assign_wcs/nirspec.py", line 59, in create_pipeline pipeline = exp_type2transform[exp_type](input_model, reference_files, slit_y_range=slit_y_range) File "/data1/jenkins /workspace/Notebooks/jwst_validation_notebooks_spacetelescope/mini conda3/envs/jwst_validation_notebooks/lib/python3.8/site- packages/jwst/assign_wcs/nirspec.py", line 303, in slits_wcs open_slits_id = get_open_slits(input_model, reference_files, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_vali dation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_no tebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 411, in get_open_slits slits = get_open_msa_slits(msa_metadata_file, msa_metadata_id, dither_point, slit_y_range) File "/data1/jenkins/workspace/Noteb ooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst _validation_notebooks/lib/python3.8/site- packages/jwst/assign_wcs/nirspec.py", line 568, in get_open_msa_slits raise MSAFileError(message) jwst.assign_wcs.util.MSAFileError: Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_ spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_ms a_fail0/jw95065006001_0_short_msa.fits ---------------------------------------------------------------------- ------------------------------Captured stderr call------------------------------ 2021-08-21 05:57:55,761 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 05:57:55,762 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 05:57:55,763 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 05:57:55,764 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 05:57:55,765 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 05:57:55,765 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 05:57:55,768 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 05:57:55,769 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:57:55,769 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:57:55,770 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:57:55,771 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 05:57:55,771 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 05:57:55,772 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:57:55,773 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 05:57:55,774 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 05:57:55,774 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 05:57:55,775 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:57:55,776 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:57:55,776 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 05:57:55,777 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 05:57:55,779 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 05:57:55,780 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 05:57:55,780 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 05:57:55,780 - stpipe - INFO - OS: Linux 2021-08-21 05:57:55,975 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2021-08-21 05:57:55,987 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 05:57:56,027 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 05:57:56,060 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 05:57:56,062 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 05:57:56,063 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 05:57:56,064 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 05:57:56,065 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 05:57:56,066 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 05:57:56,066 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 05:57:56,068 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 05:57:56,069 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 05:57:56,069 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 05:57:56,069 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 05:57:56,071 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 05:57:56,072 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 05:57:56,072 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 05:57:56,073 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 05:57:56,074 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 05:57:56,075 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 05:57:56,075 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 05:57:56,075 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 05:57:56,075 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 05:57:56,075 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 05:57:56,076 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 05:57:56,077 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 05:57:56,078 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 05:57:56,079 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 05:57:56,080 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 05:57:56,081 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 05:57:56,081 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 05:57:56,082 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 05:57:56,082 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 05:57:56,084 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 05:57:56,085 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 05:57:56,085 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 05:57:56,086 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2021-08-21 05:57:56,086 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2021-08-21 05:57:56,320 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2021-08-21 05:57:56,321 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 05:57:56,464 - stpipe.Spec2Pipeline.assign_wcs - ERROR - Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits 2021-08-21 05:57:56,464 - stpipe.Spec2Pipeline - ERROR - Assign_wcs processing was skipped. 2021-08-21 05:57:56,464 - stpipe.Spec2Pipeline - ERROR - Aborting remaining processing for this exposure. 2021-08-21 05:57:56,464 - stpipe.Spec2Pipeline - ERROR - No output product will be created. Traceback (most recent call last): File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 564, in get_open_msa_slits msa_file = fits.open(msa_file, memmap=False) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/hdu/hdulist.py", line 173, in fitsopen return HDUList.fromfile(name, mode, memmap, save_backup, cache, File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/hdu/hdulist.py", line 408, in fromfile return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/hdu/hdulist.py", line 1064, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/utils/decorators.py", line 536, in wrapper return function(*args, **kwargs) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/file.py", line 170, in __init__ self._open_filename(fileobj, mode, overwrite) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/file.py", line 558, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/util.py", line 390, in fileobj_open return open(filename, mode, buffering=0) FileNotFoundError: [Errno 2] No such file or directory: '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/pipeline/calwebb_spec2.py", line 113, in process result = self.process_exposure_product( File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/pipeline/calwebb_spec2.py", line 229, in process_exposure_product raise assign_wcs_exception File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/pipeline/calwebb_spec2.py", line 213, in process_exposure_product calibrated = self.assign_wcs(science) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stpipe/step.py", line 407, in run step_result = self.process(*args) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/assign_wcs_step.py", line 94, in process result = load_wcs(input_model, reference_file_names, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/assign_wcs.py", line 52, in load_wcs pipeline = mod.create_pipeline(input_model, reference_files, slit_y_range=nrs_slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 59, in create_pipeline pipeline = exp_type2transform[exp_type](input_model, reference_files, slit_y_range=slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 303, in slits_wcs open_slits_id = get_open_slits(input_model, reference_files, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 411, in get_open_slits slits = get_open_msa_slits(msa_metadata_file, msa_metadata_id, dither_point, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 568, in get_open_msa_slits raise MSAFileError(message) jwst.assign_wcs.util.MSAFileError: Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:567 Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:567 Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_fail0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 Assign_wcs processing was skipped. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 Aborting remaining processing for this exposure. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 No output product will be created. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_missing_msa_nofail | 1.87 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 05:57:57,662 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 05:57:57,663 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 05:57:57,664 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 05:57:57,665 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 05:57:57,666 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 05:57:57,666 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 05:57:57,669 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 05:57:57,670 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:57:57,671 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:57:57,671 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:57:57,672 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 05:57:57,673 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 05:57:57,674 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:57:57,674 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 05:57:57,675 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 05:57:57,676 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 05:57:57,676 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:57:57,677 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:57:57,678 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 05:57:57,679 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 05:57:57,680 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 05:57:57,681 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 05:57:57,681 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 05:57:57,681 - stpipe - INFO - OS: Linux 2021-08-21 05:57:57,902 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2021-08-21 05:57:57,915 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_bsub': False, 'fail_on_exception': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 05:57:57,956 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 05:57:57,962 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 05:57:57,964 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 05:57:57,965 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 05:57:57,965 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 05:57:57,967 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 05:57:57,967 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 05:57:57,967 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 05:57:57,968 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 05:57:57,969 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 05:57:57,969 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 05:57:57,969 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 05:57:57,969 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 05:57:57,970 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 05:57:57,970 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 05:57:57,970 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 05:57:57,971 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 05:57:57,971 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 05:57:57,971 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 05:57:57,971 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 05:57:57,972 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 05:57:57,972 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 05:57:57,972 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 05:57:57,973 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 05:57:57,973 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 05:57:57,974 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 05:57:57,974 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 05:57:57,974 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 05:57:57,974 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 05:57:57,975 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 05:57:57,975 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 05:57:57,975 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 05:57:57,976 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 05:57:57,976 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 05:57:57,977 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2021-08-21 05:57:57,977 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2021-08-21 05:57:58,223 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2021-08-21 05:57:58,224 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 05:57:58,375 - stpipe.Spec2Pipeline.assign_wcs - ERROR - Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits 2021-08-21 05:57:58,375 - stpipe.Spec2Pipeline - ERROR - Assign_wcs processing was skipped. 2021-08-21 05:57:58,375 - stpipe.Spec2Pipeline - ERROR - Aborting remaining processing for this exposure. 2021-08-21 05:57:58,375 - stpipe.Spec2Pipeline - ERROR - No output product will be created. Traceback (most recent call last): File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 564, in get_open_msa_slits msa_file = fits.open(msa_file, memmap=False) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/hdu/hdulist.py", line 173, in fitsopen return HDUList.fromfile(name, mode, memmap, save_backup, cache, File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/hdu/hdulist.py", line 408, in fromfile return cls._readfrom(fileobj=fileobj, mode=mode, memmap=memmap, File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/hdu/hdulist.py", line 1064, in _readfrom fileobj = _File(fileobj, mode=mode, memmap=memmap, cache=cache) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/utils/decorators.py", line 536, in wrapper return function(*args, **kwargs) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/file.py", line 170, in __init__ self._open_filename(fileobj, mode, overwrite) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/file.py", line 558, in _open_filename self._file = fileobj_open(self.name, IO_FITS_MODES[mode]) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/astropy/io/fits/util.py", line 390, in fileobj_open return open(filename, mode, buffering=0) FileNotFoundError: [Errno 2] No such file or directory: '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/pipeline/calwebb_spec2.py", line 113, in process result = self.process_exposure_product( File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/pipeline/calwebb_spec2.py", line 229, in process_exposure_product raise assign_wcs_exception File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/pipeline/calwebb_spec2.py", line 213, in process_exposure_product calibrated = self.assign_wcs(science) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/stpipe/step.py", line 407, in run step_result = self.process(*args) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/assign_wcs_step.py", line 94, in process result = load_wcs(input_model, reference_file_names, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/assign_wcs.py", line 52, in load_wcs pipeline = mod.create_pipeline(input_model, reference_files, slit_y_range=nrs_slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 59, in create_pipeline pipeline = exp_type2transform[exp_type](input_model, reference_files, slit_y_range=slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 303, in slits_wcs open_slits_id = get_open_slits(input_model, reference_files, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 411, in get_open_slits slits = get_open_msa_slits(msa_metadata_file, msa_metadata_id, dither_point, slit_y_range) File "/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/assign_wcs/nirspec.py", line 568, in get_open_msa_slits raise MSAFileError(message) jwst.assign_wcs.util.MSAFileError: Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits 2021-08-21 05:57:58,376 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 05:57:58,376 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_bsub': False, 'fail_on_exception': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:567 Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline.assign_wcs:nirspec.py:567 Missing MSA meta (MSAMETFL) file /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_missing_msa_nofai0/jw95065006001_0_short_msa.fits ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 Assign_wcs processing was skipped. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 Aborting remaining processing for this exposure. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 No output product will be created. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_assignwcs_skip | 1.44 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 05:57:59,463 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 05:57:59,464 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 05:57:59,465 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 05:57:59,466 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 05:57:59,467 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 05:57:59,467 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 05:57:59,470 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 05:57:59,471 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:57:59,471 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:57:59,472 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:57:59,473 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 05:57:59,473 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 05:57:59,474 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:57:59,475 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 05:57:59,475 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 05:57:59,476 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 05:57:59,477 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:57:59,477 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:57:59,478 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 05:57:59,479 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 05:57:59,480 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 05:57:59,481 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 05:57:59,481 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 05:57:59,481 - stpipe - INFO - OS: Linux 2021-08-21 05:57:59,609 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2021-08-21 05:57:59,621 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 05:57:59,657 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'cubepar', 'dflat', 'drizpars', 'extract1d', 'fflat', 'flat', 'fringe', 'msaoper', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 05:57:59,662 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 05:57:59,664 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 05:57:59,665 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 05:57:59,666 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 05:57:59,667 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 05:57:59,667 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 05:57:59,667 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 05:57:59,669 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 05:57:59,671 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 05:57:59,671 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 05:57:59,671 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 05:57:59,672 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 05:57:59,673 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 05:57:59,674 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 05:57:59,674 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 05:57:59,674 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 05:57:59,676 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 05:57:59,677 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 05:57:59,677 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 05:57:59,677 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 05:57:59,678 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2021-08-21 05:57:59,678 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2021-08-21 05:57:59,824 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2021-08-21 05:57:59,825 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 05:57:59,825 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step skipped. 2021-08-21 05:57:59,826 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 05:57:59,826 - stpipe.Spec2Pipeline - WARNING - Assign_wcs processing was skipped. 2021-08-21 05:57:59,826 - stpipe.Spec2Pipeline - WARNING - Aborting remaining processing for this exposure. 2021-08-21 05:57:59,826 - stpipe.Spec2Pipeline - WARNING - No output product will be created. 2021-08-21 05:57:59,826 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 05:57:59,826 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'cubepar', 'dflat', 'drizpars', 'extract1d', 'fflat', 'flat', 'fringe', 'msaoper', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_assignwcs_skip0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} INFO stpipe.Spec2Pipeline.assign_wcs:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done WARNING stpipe.Spec2Pipeline:calwebb_spec2.py:224 Assign_wcs processing was skipped. WARNING stpipe.Spec2Pipeline:calwebb_spec2.py:224 Aborting remaining processing for this exposure. WARNING stpipe.Spec2Pipeline:calwebb_spec2.py:224 No output product will be created. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_exceptions.py::test_nirspec_nrs2_nodata_api | 2.08 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 05:58:00,831 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 05:58:00,833 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 05:58:00,834 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 05:58:00,835 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 05:58:00,835 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 05:58:00,836 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 05:58:00,839 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 05:58:00,839 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:58:00,840 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:58:00,841 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:58:00,842 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 05:58:00,842 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 05:58:00,843 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:58:00,844 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 05:58:00,845 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 05:58:00,845 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 05:58:00,846 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:58:00,847 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:58:00,848 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 05:58:00,848 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 05:58:00,850 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 05:58:00,851 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 05:58:01,042 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits',). 2021-08-21 05:58:01,054 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 05:58:01,258 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw84700006001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 05:58:01,290 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0006.asdf'. 2021-08-21 05:58:01,291 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0008.fits'. 2021-08-21 05:58:01,293 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2021-08-21 05:58:01,293 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 05:58:01,294 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 05:58:01,296 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0003.fits'. 2021-08-21 05:58:01,297 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2021-08-21 05:58:01,298 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 05:58:01,300 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 05:58:01,300 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 05:58:01,300 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0001.asdf'. 2021-08-21 05:58:01,301 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0013.fits'. 2021-08-21 05:58:01,303 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 05:58:01,303 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 05:58:01,303 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 05:58:01,304 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 05:58:01,306 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 05:58:01,306 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. 2021-08-21 05:58:01,307 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. 2021-08-21 05:58:01,309 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. 2021-08-21 05:58:01,310 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 05:58:01,312 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 05:58:01,313 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 05:58:01,314 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0003.fits'. 2021-08-21 05:58:01,315 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits'. 2021-08-21 05:58:01,317 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 05:58:01,317 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 05:58:01,317 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0031.fits'. 2021-08-21 05:58:01,318 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 05:58:01,319 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is 'N/A'. 2021-08-21 05:58:01,319 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 05:58:01,320 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 05:58:01,321 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 05:58:01,321 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2 2021-08-21 05:58:01,322 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits ... 2021-08-21 05:58:01,730 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw84700006001_02101_00001_nrs2_rate.fits>,). 2021-08-21 05:58:01,731 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 05:58:01,915 - stpipe.Spec2Pipeline.assign_wcs - CRITICAL - No IFU slices fall on detector NRS2 2021-08-21 05:58:01,915 - stpipe.Spec2Pipeline - ERROR - Assign_wcs processing was skipped. 2021-08-21 05:58:01,915 - stpipe.Spec2Pipeline - ERROR - Aborting remaining processing for this exposure. 2021-08-21 05:58:01,915 - stpipe.Spec2Pipeline - ERROR - No output product will be created. -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw84700006001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw84700006001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0006.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0008.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_cubepar_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0001.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0016.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0031.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0/jw84700006001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:362 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<IFUImageModel(2048, 2048) from jw84700006001_02101_00001_nrs2_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_nrs2_nodata_api0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} CRITICAL stpipe.Spec2Pipeline.assign_wcs:nirspec.py:195 No IFU slices fall on detector NRS2 CRITICAL stpipe.Spec2Pipeline.assign_wcs:nirspec.py:195 No IFU slices fall on detector NRS2 ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 Assign_wcs processing was skipped. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 Aborting remaining processing for this exposure. ERROR stpipe.Spec2Pipeline:calwebb_spec2.py:227 No output product will be created. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[fullframe-assign_wcs] | 118.34 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 05:58:04,033 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 05:58:04,034 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 05:58:04,035 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 05:58:04,036 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 05:58:04,036 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 05:58:04,037 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 05:58:04,040 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 05:58:04,041 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:58:04,041 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:58:04,042 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:58:04,043 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 05:58:04,043 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 05:58:04,044 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 05:58:04,045 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 05:58:04,045 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 05:58:04,046 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 05:58:04,047 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 05:58:04,048 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 05:58:04,048 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 05:58:04,050 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 05:58:04,052 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 05:58:04,053 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 05:58:04,053 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 05:58:04,053 - stpipe - INFO - OS: Linux 2021-08-21 05:58:04,230 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits',). 2021-08-21 05:58:04,242 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 05:58:04,275 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw00023001001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 05:58:04,292 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2021-08-21 05:58:04,293 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits'. 2021-08-21 05:58:04,295 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2021-08-21 05:58:04,295 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 05:58:04,295 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 05:58:04,296 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 05:58:04,296 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 05:58:04,296 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf'. 2021-08-21 05:58:04,298 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 05:58:04,298 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 05:58:04,298 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2021-08-21 05:58:04,299 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0006.fits'. 2021-08-21 05:58:04,300 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 05:58:04,300 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 05:58:04,300 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf'. 2021-08-21 05:58:04,301 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 05:58:04,302 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 05:58:04,302 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 05:58:04,302 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 05:58:04,302 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 05:58:04,302 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 05:58:04,303 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 05:58:04,303 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 05:58:04,304 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2021-08-21 05:58:04,305 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2021-08-21 05:58:04,307 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 05:58:04,307 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 05:58:04,307 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0029.fits'. 2021-08-21 05:58:04,308 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 05:58:04,309 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. 2021-08-21 05:58:04,310 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 05:58:04,311 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 05:58:04,311 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 05:58:04,311 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 2021-08-21 05:58:04,311 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits ... 2021-08-21 05:58:04,454 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_rate.fits>,). 2021-08-21 05:58:04,455 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 05:58:04,608 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.02 deg 2021-08-21 05:58:04,608 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.01 deg 2021-08-21 05:58:04,609 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.44965731468948844 deg 2021-08-21 05:58:04,609 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 05:58:04,795 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] 2021-08-21 05:58:04,795 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 5 open slitlets 2021-08-21 05:58:04,823 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.02 deg 2021-08-21 05:58:04,823 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.01 deg 2021-08-21 05:58:04,824 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.44965731468948844 deg 2021-08-21 05:58:04,824 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 05:58:04,833 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[7e-07, 1.27e-06] 2021-08-21 05:58:04,949 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2021-08-21 05:58:04,949 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 05:58:04,949 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2021-08-21 05:58:04,949 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2021-08-21 05:58:04,950 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 5 open slits in quadrant 5 2021-08-21 05:58:05,144 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 05:58:05,545 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 05:58:05,921 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits 2021-08-21 05:58:05,921 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 05:58:06,052 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). 2021-08-21 05:58:06,053 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 05:58:06,053 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 05:58:06,054 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 05:58:06,171 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). 2021-08-21 05:58:06,171 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 05:58:06,171 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 05:58:06,172 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 05:58:06,283 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). 2021-08-21 05:58:06,284 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 05:58:06,284 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2021-08-21 05:58:06,285 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 05:58:06,399 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). 2021-08-21 05:58:06,400 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 05:58:06,417 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_FIXEDSLIT 2021-08-21 05:58:06,585 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A1 2021-08-21 05:58:06,585 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2021-08-21 05:58:06,585 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1057 1120 2021-08-21 05:58:06,886 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 05:58:06,894 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 2021-08-21 05:58:06,895 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 2021-08-21 05:58:07,044 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A2 2021-08-21 05:58:07,045 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1974 2021-08-21 05:58:07,045 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1020 1087 2021-08-21 05:58:07,256 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 05:58:07,264 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 2021-08-21 05:58:07,265 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 2021-08-21 05:58:07,567 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S400A1 2021-08-21 05:58:07,567 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2021-08-21 05:58:07,567 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 980 1049 2021-08-21 05:58:07,788 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 05:58:07,796 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 2021-08-21 05:58:07,797 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 2021-08-21 05:58:07,948 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S1600A1 2021-08-21 05:58:07,948 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2021-08-21 05:58:07,949 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 960 1006 2021-08-21 05:58:08,135 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 05:58:08,143 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 2021-08-21 05:58:08,144 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 2021-08-21 05:58:08,296 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200B1 2021-08-21 05:58:08,296 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1273 2048 2021-08-21 05:58:08,296 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 922 971 2021-08-21 05:58:08,613 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 05:58:08,621 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 2021-08-21 05:58:08,622 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 2021-08-21 05:58:09,753 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw00023001001_01101_00001_nrs1_extract_2d.fits 2021-08-21 05:58:09,754 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 05:58:09,908 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_extract_2d.fits>,). 2021-08-21 05:58:09,909 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 05:58:09,916 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_FIXEDSLIT 2021-08-21 05:58:09,916 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2021-08-21 05:58:09,916 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2021-08-21 05:58:09,917 - stpipe.Spec2Pipeline.srctype - INFO - Input source type is unknown; setting default SRCTYPE = POINT 2021-08-21 05:58:10,891 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in jw00023001001_01101_00001_nrs1_srctype.fits 2021-08-21 05:58:10,891 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 05:58:11,042 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). 2021-08-21 05:58:11,045 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} 2021-08-21 05:58:11,045 - stpipe.Spec2Pipeline.master_background - INFO - Step skipped. 2021-08-21 05:58:11,046 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 05:58:11,187 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). 2021-08-21 05:58:11,188 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 05:58:11,694 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf 2021-08-21 05:58:12,573 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit S400A1 2021-08-21 05:58:12,575 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 05:58:12,896 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture S400A1 2021-08-21 05:58:13,715 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jw00023001001_01101_00001_nrs1_wavecorr.fits 2021-08-21 05:58:13,715 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 05:58:13,895 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_wavecorr.fits>,). 2021-08-21 05:58:13,896 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 05:58:17,035 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A1 2021-08-21 05:58:33,409 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A2 2021-08-21 05:58:48,834 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S400A1 2021-08-21 05:58:48,836 - stpipe.Spec2Pipeline.flat_field - INFO - Creating wavelength array from WCS for slit S400A1 2021-08-21 05:59:25,594 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S1600A1 2021-08-21 05:59:34,005 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200B1 2021-08-21 05:59:41,696 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw00023001001_01101_00001_nrs1_flat_field.fits 2021-08-21 05:59:41,696 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 05:59:42,036 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_flat_field.fits>,). 2021-08-21 05:59:42,037 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 05:59:42,070 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2021-08-21 05:59:42,141 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 05:59:43,249 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A1 2021-08-21 05:59:43,249 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A1 2021-08-21 05:59:43,279 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A2 2021-08-21 05:59:43,279 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A2 2021-08-21 05:59:43,306 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S400A1 2021-08-21 05:59:43,307 - stpipe.Spec2Pipeline.pathloss - WARNING - Cannot find matching pathloss model for S400A1 2021-08-21 05:59:43,307 - stpipe.Spec2Pipeline.pathloss - WARNING - Skipping pathloss correction for this slit 2021-08-21 05:59:43,307 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 05:59:43,307 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S1600A1 2021-08-21 05:59:43,307 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S1600A1 2021-08-21 05:59:43,331 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200B1 2021-08-21 05:59:43,331 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200B1 2021-08-21 05:59:44,242 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in jw00023001001_01101_00001_nrs1_pathloss.fits 2021-08-21 05:59:44,242 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 05:59:44,466 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). 2021-08-21 05:59:44,467 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 05:59:44,467 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2021-08-21 05:59:44,468 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 05:59:44,646 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). 2021-08-21 05:59:44,647 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 05:59:44,694 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2021-08-21 05:59:44,694 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits 2021-08-21 05:59:45,407 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 05:59:45,407 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2021-08-21 05:59:45,407 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_FIXEDSLIT 2021-08-21 05:59:45,407 - stpipe.Spec2Pipeline.photom - INFO - filter: F070LP 2021-08-21 05:59:45,407 - stpipe.Spec2Pipeline.photom - INFO - grating: G140H 2021-08-21 05:59:45,455 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A1 2021-08-21 05:59:45,455 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 05:59:45,464 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A2 2021-08-21 05:59:45,465 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 05:59:45,474 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S400A1 2021-08-21 05:59:45,474 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 05:59:45,720 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S1600A1 2021-08-21 05:59:45,721 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 05:59:45,736 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200B1 2021-08-21 05:59:45,737 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 05:59:45,751 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 05:59:46,004 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_cal.fits>,). 2021-08-21 05:59:46,006 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 05:59:46,049 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 05:59:46,050 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 05:59:46,050 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 05:59:46,050 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 05:59:46,050 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 05:59:46,050 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 05:59:46,050 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw00023001001_01101_00001_nrs1_cal.fits 2021-08-21 05:59:47,145 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 05:59:47,293 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (35, 2048) 2021-08-21 05:59:47,336 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 05:59:47,481 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (35, 2048) 2021-08-21 05:59:47,525 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 05:59:47,666 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (35, 2048) 2021-08-21 05:59:47,709 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 05:59:47,859 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (63, 2048) --> (35, 2048) 2021-08-21 05:59:47,932 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.125917037 15.121888405 15.126370856 15.121888405 15.126370856 15.122782085 15.125917037 15.122782085 2021-08-21 05:59:48,482 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 05:59:48,638 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (67, 1974) --> (35, 1974) 2021-08-21 05:59:48,677 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 05:59:48,823 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (67, 1974) --> (35, 1974) 2021-08-21 05:59:48,870 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 05:59:49,028 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (67, 1974) --> (35, 1974) 2021-08-21 05:59:49,070 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 05:59:49,215 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (67, 1974) --> (35, 1974) 2021-08-21 05:59:49,286 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.120384885 15.120391416 15.120837310 15.120391416 15.120837310 15.121285148 15.120384885 15.121285148 2021-08-21 05:59:49,892 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 05:59:50,051 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (69, 2048) --> (40, 2048) 2021-08-21 05:59:50,098 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 05:59:50,253 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (69, 2048) --> (40, 2048) 2021-08-21 05:59:50,301 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 05:59:50,451 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (69, 2048) --> (40, 2048) 2021-08-21 05:59:50,499 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 05:59:50,650 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (69, 2048) --> (40, 2048) 2021-08-21 05:59:50,734 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.123128464 15.122914449 15.123647724 15.122914449 15.123647724 15.123937961 15.123128464 15.123937961 2021-08-21 05:59:51,052 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 05:59:51,154 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 2048) --> (17, 2048) 2021-08-21 05:59:51,174 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 05:59:51,280 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 2048) --> (17, 2048) 2021-08-21 05:59:51,301 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 05:59:51,404 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 2048) --> (17, 2048) 2021-08-21 05:59:51,425 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 05:59:51,526 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (46, 2048) --> (17, 2048) 2021-08-21 05:59:51,566 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.123516678 15.124364300 15.123729612 15.124364300 15.123729612 15.124783802 15.123516678 15.124783802 2021-08-21 05:59:51,802 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 05:59:51,857 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 775) --> (34, 775) 2021-08-21 05:59:51,872 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 05:59:51,925 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 775) --> (34, 775) 2021-08-21 05:59:51,941 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 05:59:51,993 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 775) --> (34, 775) 2021-08-21 05:59:52,013 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 05:59:52,067 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 775) --> (34, 775) 2021-08-21 05:59:52,097 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 15.164630257 15.144807640 15.165079166 15.144807640 15.165079166 15.145668913 15.164630257 15.145668913 2021-08-21 05:59:52,666 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw00023001001_01101_00001_nrs1_s2d.fits 2021-08-21 05:59:52,667 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 05:59:52,839 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_s2d.fits>,). 2021-08-21 05:59:52,840 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 05:59:52,920 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2021-08-21 05:59:52,938 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2021-08-21 05:59:52,984 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2021-08-21 05:59:52,984 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A1 2021-08-21 05:59:52,984 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 05:59:52,984 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 05:59:52,984 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 05:59:53,009 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 05:59:53,009 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=2047, ystart=14.0, ystop=20.0 2021-08-21 05:59:53,327 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A2 2021-08-21 05:59:53,328 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 05:59:53,328 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 05:59:53,328 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 05:59:53,351 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 05:59:53,351 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1973, ystart=14.0, ystop=20.0 2021-08-21 05:59:53,676 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S400A1 2021-08-21 05:59:53,724 - stpipe.Spec2Pipeline.extract_1d - WARNING - WCS implies the target is at -1247932.81, which is outside the bounding box, 2021-08-21 05:59:53,724 - stpipe.Spec2Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 05:59:53,726 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 05:59:53,726 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=2047, ystart=16.5, ystop=22.5 2021-08-21 05:59:54,063 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 05:59:57,250 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S1600A1 2021-08-21 05:59:57,251 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 05:59:57,251 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 05:59:57,251 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 05:59:57,281 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 05:59:57,281 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=2047, ystart=5.0, ystop=11.0 2021-08-21 05:59:57,615 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200B1 2021-08-21 05:59:57,615 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 05:59:57,615 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 05:59:57,615 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 05:59:57,626 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 05:59:57,627 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=774, ystart=13.5, ystop=19.5 2021-08-21 05:59:57,944 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw00023001001_01101_00001_nrs1_x1d.fits 2021-08-21 05:59:57,945 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 05:59:57,945 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 2021-08-21 05:59:57,945 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 05:59:59,309 - stpipe.Spec2Pipeline - INFO - Saved model in jw00023001001_01101_00001_nrs1_cal.fits 2021-08-21 05:59:59,309 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw00023001001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0006.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0029.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:342 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:362 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 5 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 5 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[7e-07, 1.27e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[7e-07, 1.27e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 5 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 5 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(2048, 2048) from jw00023001001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1057 1120 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1057 1120 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.126398753 15.121897628 15.125938751 15.122803468 15.125885327 15.122777650 15.126345318 15.121871801 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 1974 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 1974 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1020 1087 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1020 1087 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.120865130 15.120399965 15.120407962 15.121303054 15.120354955 15.121277371 15.120812112 15.120374275 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 980 1049 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 980 1049 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123701334 15.122935633 15.123177717 15.123967699 15.123073180 15.123917142 15.123596771 15.122885057 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 960 1006 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 960 1006 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.123945145 15.124446650 15.123721208 15.124887775 15.123306821 15.124687442 15.123530715 15.124246288 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1273 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 1273 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 922 971 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 922 971 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 15.165114571 15.144804371 15.164646023 15.145703307 15.164593736 15.145678580 15.165062271 15.144779641 INFO stpipe.Spec2Pipeline.extract_2d:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:101 Input source type is unknown; setting default SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:101 Input source type is unknown; setting default SRCTYPE = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:119 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:119 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S400A1 = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S400A1 = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S1600A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S1600A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200B1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200B1 = EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit S400A1 INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0006.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0029.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 58362 out of 129024 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 58362 out of 129024 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2541 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2541 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 48 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 48 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 64372 out of 132258 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 64372 out of 132258 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 3585 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 3585 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 43 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 43 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1941 Creating wavelength array from WCS for slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1941 Creating wavelength array from WCS for slit S400A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 60775 out of 141312 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 60775 out of 141312 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 60794 out of 141312 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 60794 out of 141312 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2935 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 59822 out of 94208 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 59822 out of 94208 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2817 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 2817 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200B1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 11286 out of 37975 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 11286 out of 37975 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 7471 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 7471 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 41 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 41 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S400A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:431 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:431 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200B1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200B1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F070LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F070LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G140H INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G140H DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0021.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200B1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200B1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00023001001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw00023001001_01101_00001_nrs1_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 5 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 5 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (35, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 62.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (63, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (63, 2048) --> (35, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.125917037 15.121888405 15.126370856 15.121888405 15.126370856 15.122782085 15.125917037 15.122782085 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.125917037 15.121888405 15.126370856 15.121888405 15.126370856 15.122782085 15.125917037 15.122782085 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (35, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1973.5), (-0.5, 66.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (67, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 1974) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (67, 1974) --> (35, 1974) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.120384885 15.120391416 15.120837310 15.120391416 15.120837310 15.121285148 15.120384885 15.121285148 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.120384885 15.120391416 15.120837310 15.120391416 15.120837310 15.121285148 15.120384885 15.121285148 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 68.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (69, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (69, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.123128464 15.122914449 15.123647724 15.122914449 15.123647724 15.123937961 15.123128464 15.123937961 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.123128464 15.122914449 15.123647724 15.122914449 15.123647724 15.123937961 15.123128464 15.123937961 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 45.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (46, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (46, 2048) --> (17, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.123516678 15.124364300 15.123729612 15.124364300 15.123729612 15.124783802 15.123516678 15.124783802 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.123516678 15.124364300 15.123729612 15.124364300 15.123729612 15.124783802 15.123516678 15.124783802 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 774.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 775) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 775) --> (34, 775) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.164630257 15.144807640 15.165079166 15.144807640 15.165079166 15.145668913 15.164630257 15.145668913 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 15.164630257 15.144807640 15.165079166 15.144807640 15.165079166 15.145668913 15.164630257 15.145668913 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from jw00023001001_01101_00001_nrs1_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.5], [20.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.5], [20.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=14.0, ystop=20.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=14.0, ystop=20.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.5], [20.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.5], [20.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1973, ystart=14.0, ystop=20.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1973, ystart=14.0, ystop=20.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S400A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at -1247932.81, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1482 WCS implies the target is at -1247932.81, which is outside the bounding box, WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec2Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[16.0], [23.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[16.0], [23.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=16.5, ystop=22.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=16.5, ystop=22.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[4.5], [11.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[4.5], [11.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=5.0, ystop=11.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=5.0, ystop=11.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200B1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200B1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.0], [20.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.0], [20.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=774, ystart=13.5, ystop=19.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=774, ystart=13.5, ystop=19.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw00023001001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 84104640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 84104640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 84104640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 84104640 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[S400A1-subarray-assign_wcs] | 52.77 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:00:05,970 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:00:05,971 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:00:05,972 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:00:05,974 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:00:05,974 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:00:05,975 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:00:05,978 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:00:05,978 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:00:05,979 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:00:05,980 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:00:05,981 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:00:05,981 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:00:05,982 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:00:05,983 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:00:05,983 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:00:05,984 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:00:05,985 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:00:05,985 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:00:05,986 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:00:05,987 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:00:05,988 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:00:05,989 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:00:05,989 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:00:05,989 - stpipe - INFO - OS: Linux 2021-08-21 06:00:06,210 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits',). 2021-08-21 06:00:06,222 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:00:06,333 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw93045010001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:00:06,354 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2021-08-21 06:00:06,355 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits'. 2021-08-21 06:00:06,357 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2021-08-21 06:00:06,357 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:00:06,359 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:00:06,363 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:00:06,363 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2021-08-21 06:00:06,364 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf'. 2021-08-21 06:00:06,366 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:00:06,366 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:00:06,366 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2021-08-21 06:00:06,368 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0004.fits'. 2021-08-21 06:00:06,371 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:00:06,371 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:00:06,371 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf'. 2021-08-21 06:00:06,373 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:00:06,376 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 06:00:06,376 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:00:06,376 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:00:06,376 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:00:06,376 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:00:06,378 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:00:06,379 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:00:06,380 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2021-08-21 06:00:06,381 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2021-08-21 06:00:06,382 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:00:06,382 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:00:06,382 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0010.fits'. 2021-08-21 06:00:06,384 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:00:06,384 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. 2021-08-21 06:00:06,385 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:00:06,387 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:00:06,388 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:00:06,388 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 2021-08-21 06:00:06,389 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits ... 2021-08-21 06:00:06,619 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_rate.fits>,). 2021-08-21 06:00:06,621 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:00:06,784 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1459361909999999 deg 2021-08-21 06:00:06,784 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3209364410000003 deg 2021-08-21 06:00:06,784 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.002662951944890008 deg 2021-08-21 06:00:06,785 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:00:06,945 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS2: ['S400A1'] 2021-08-21 06:00:06,945 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 1 open slitlets 2021-08-21 06:00:06,973 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1459361909999999 deg 2021-08-21 06:00:06,973 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3209364410000003 deg 2021-08-21 06:00:06,973 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.002662951944890008 deg 2021-08-21 06:00:06,974 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:00:06,983 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[2.87e-06, 5.27e-06] 2021-08-21 06:00:07,101 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2021-08-21 06:00:07,101 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:00:07,102 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2021-08-21 06:00:07,102 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2021-08-21 06:00:07,102 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 5 2021-08-21 06:00:07,227 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 06:00:07,324 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:00:07,552 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw93045010001_02101_00001_nrs2_assign_wcs.fits 2021-08-21 06:00:07,553 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:00:07,691 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). 2021-08-21 06:00:07,692 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:00:07,693 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:00:07,693 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:00:07,797 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). 2021-08-21 06:00:07,797 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:00:07,798 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:00:07,798 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:00:07,901 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). 2021-08-21 06:00:07,902 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:00:07,902 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2021-08-21 06:00:07,903 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:00:08,006 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). 2021-08-21 06:00:08,007 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:00:08,023 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_FIXEDSLIT 2021-08-21 06:00:08,151 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S400A1 2021-08-21 06:00:08,151 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 2048 2021-08-21 06:00:08,151 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 5 70 2021-08-21 06:00:08,373 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:00:08,381 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 2021-08-21 06:00:08,382 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 2021-08-21 06:00:08,638 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw93045010001_02101_00001_nrs2_extract_2d.fits 2021-08-21 06:00:08,638 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:00:08,763 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_extract_2d.fits>,). 2021-08-21 06:00:08,764 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:00:08,771 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_FIXEDSLIT 2021-08-21 06:00:08,771 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2021-08-21 06:00:08,771 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2021-08-21 06:00:08,771 - stpipe.Spec2Pipeline.srctype - INFO - Input source type is unknown; setting default SRCTYPE = POINT 2021-08-21 06:00:08,994 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in jw93045010001_02101_00001_nrs2_srctype.fits 2021-08-21 06:00:08,995 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:00:09,112 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). 2021-08-21 06:00:09,115 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:00:09,116 - stpipe.Spec2Pipeline.master_background - INFO - Step skipped. 2021-08-21 06:00:09,116 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:00:09,232 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). 2021-08-21 06:00:09,233 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:00:09,272 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf 2021-08-21 06:00:09,450 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit S400A1 2021-08-21 06:00:09,451 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 06:00:09,729 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture S400A1 2021-08-21 06:00:09,967 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jw93045010001_02101_00001_nrs2_wavecorr.fits 2021-08-21 06:00:09,967 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:00:10,091 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_wavecorr.fits>,). 2021-08-21 06:00:10,092 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:00:11,164 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S400A1 2021-08-21 06:00:11,165 - stpipe.Spec2Pipeline.flat_field - INFO - Creating wavelength array from WCS for slit S400A1 2021-08-21 06:00:50,088 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw93045010001_02101_00001_nrs2_flat_field.fits 2021-08-21 06:00:50,089 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:00:50,453 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_flat_field.fits>,). 2021-08-21 06:00:50,454 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 06:00:50,479 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2021-08-21 06:00:50,552 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 06:00:50,749 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S400A1 2021-08-21 06:00:50,749 - stpipe.Spec2Pipeline.pathloss - WARNING - Cannot find matching pathloss model for S400A1 2021-08-21 06:00:50,749 - stpipe.Spec2Pipeline.pathloss - WARNING - Skipping pathloss correction for this slit 2021-08-21 06:00:50,749 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 0. Skipping 2021-08-21 06:00:50,994 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in jw93045010001_02101_00001_nrs2_pathloss.fits 2021-08-21 06:00:50,995 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:00:51,237 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). 2021-08-21 06:00:51,238 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 06:00:51,238 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2021-08-21 06:00:51,239 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:00:51,471 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). 2021-08-21 06:00:51,472 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 06:00:51,506 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2021-08-21 06:00:51,506 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits 2021-08-21 06:00:51,695 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:00:51,696 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS2 2021-08-21 06:00:51,696 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_FIXEDSLIT 2021-08-21 06:00:51,696 - stpipe.Spec2Pipeline.photom - INFO - filter: F290LP 2021-08-21 06:00:51,696 - stpipe.Spec2Pipeline.photom - INFO - grating: G395H 2021-08-21 06:00:51,743 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S400A1 2021-08-21 06:00:51,743 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:00:51,929 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:00:52,140 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_cal.fits>,). 2021-08-21 06:00:52,142 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:00:52,168 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:00:52,169 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:00:52,169 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:00:52,169 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:00:52,169 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:00:52,170 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:00:52,170 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits 2021-08-21 06:00:52,844 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:00:52,986 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 2048) 2021-08-21 06:00:53,039 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:00:53,186 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 2048) 2021-08-21 06:00:53,234 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:00:53,380 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 2048) 2021-08-21 06:00:53,428 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:00:53,571 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 2048) 2021-08-21 06:00:53,663 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 80.486357364 -69.498737090 80.488512096 -69.498737090 80.488512096 -69.497882831 80.486357364 -69.497882831 2021-08-21 06:00:53,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jw93045010001_02101_00001_nrs2_s2d.fits 2021-08-21 06:00:53,783 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:00:53,958 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_s2d.fits>,). 2021-08-21 06:00:53,959 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:00:53,981 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2021-08-21 06:00:53,995 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2021-08-21 06:00:54,051 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2021-08-21 06:00:54,051 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S400A1 2021-08-21 06:00:54,087 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying position offset of 1.18 to ystart and ystop 2021-08-21 06:00:54,088 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:00:54,088 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=2047, ystart=17.68175956629791, ystop=23.68175956629791 2021-08-21 06:00:54,404 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:00:57,714 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jw93045010001_02101_00001_nrs2_x1d.fits 2021-08-21 06:00:57,714 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:00:57,714 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 2021-08-21 06:00:57,714 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:00:57,976 - stpipe.Spec2Pipeline - INFO - Saved model in jw93045010001_02101_00001_nrs2_cal.fits 2021-08-21 06:00:57,976 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 2684160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 2684160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 2684160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_rate.fits HTTP/1.1" 200 2684160 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw93045010001_02101_00001_nrs2_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0010.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:342 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:362 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS2: ['S400A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS2: ['S400A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 1 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1459361909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3209364410000003 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.002662951944890008 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[2.87e-06, 5.27e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[2.87e-06, 5.27e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0035.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0022.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(64, 2048) from jw93045010001_02101_00001_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 0 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 5 70 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 5 70 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 80.488650958 -69.498704376 80.486478523 -69.497843122 80.486238928 -69.497918609 80.488411306 -69.498779890 INFO stpipe.Spec2Pipeline.extract_2d:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:101 Input source type is unknown; setting default SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:101 Input source type is unknown; setting default SRCTYPE = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:119 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:119 primary_slit = S400A1 DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S400A1 = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S400A1 = POINT INFO stpipe.Spec2Pipeline.srctype:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit S400A1 INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture S400A1 INFO stpipe.Spec2Pipeline.wavecorr:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0004.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0010.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1941 Creating wavelength array from WCS for slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:1941 Creating wavelength array from WCS for slit S400A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 40474 out of 120832 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 40474 out of 120832 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 74 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 74 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 40489 out of 120832 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 40489 out of 120832 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 8038 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 74 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 74 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S400A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:431 No correction provided for slit 0. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:431 No correction provided for slit 0. Skipping INFO stpipe.Spec2Pipeline.pathloss:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_pathloss.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS2 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F290LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F290LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G395H INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G395H DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0027.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 2048) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 80.486357364 -69.498737090 80.488512096 -69.498737090 80.488512096 -69.497882831 80.486357364 -69.497882831 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 80.486357364 -69.498737090 80.488512096 -69.498737090 80.488512096 -69.497882831 80.486357364 -69.497882831 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from jw93045010001_02101_00001_nrs2_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S400A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 1023 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1335 Target spectrum is at 20.68 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1335 Target spectrum is at 20.68 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 19.50 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 19.50 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3988 Computed source offset=1.18, source location=20.68 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3988 Computed source offset=1.18, source location=20.68 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1654 Applying position offset of 1.18 to ystart and ystop INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1654 Applying position offset of 1.18 to ystart and ystop DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 1.1817595662979095 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 1.1817595662979095 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[17.18175956629791], [24.18175956629791]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[17.18175956629791], [24.18175956629791]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=17.68175956629791, ystop=23.68175956629791 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=2047, ystart=17.68175956629791, ystop=23.68175956629791 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jw93045010001_02101_00001_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw93045010001_02101_00001_nrs2_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2761920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2761920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jw93045010001_02101_00001_nrs2_assign_wcs.fits HTTP/1.1" 200 2761920 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-assign_wcs] | 60.80 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:01:01,560 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:01:01,561 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:01:01,562 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:01:01,563 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:01:01,564 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:01:01,564 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:01:01,567 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:01:01,568 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:01:01,568 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:01:01,569 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:01:01,570 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:01:01,571 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:01:01,571 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:01:01,572 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:01:01,573 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:01:01,573 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:01:01,574 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:01:01,575 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:01:01,575 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:01:01,577 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:01:01,578 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:01:01,579 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:01:01,579 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:01:01,579 - stpipe - INFO - OS: Linux 2021-08-21 06:01:01,764 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits',). 2021-08-21 06:01:01,781 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:01:01,824 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jwtest1013001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:01:01,840 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2021-08-21 06:01:01,840 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits'. 2021-08-21 06:01:01,842 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is 'N/A'. 2021-08-21 06:01:01,842 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:01:01,843 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:01:01,844 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:01:01,844 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:01:01,846 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:01:01,847 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:01:01,847 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:01:01,847 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2021-08-21 06:01:01,848 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. 2021-08-21 06:01:01,850 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:01:01,850 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:01:01,850 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 06:01:01,851 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:01:01,852 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 06:01:01,852 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:01:01,852 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:01:01,852 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:01:01,853 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:01:01,854 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:01:01,854 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:01:01,855 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. 2021-08-21 06:01:01,856 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. 2021-08-21 06:01:01,857 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:01:01,857 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:01:01,857 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0014.fits'. 2021-08-21 06:01:01,859 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:01:01,859 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. 2021-08-21 06:01:01,860 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:01:01,861 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:01:01,862 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:01:01,862 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 2021-08-21 06:01:01,862 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits ... 2021-08-21 06:01:02,015 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_rate.fits>,). 2021-08-21 06:01:02,016 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:01:02,183 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1389586 deg 2021-08-21 06:01:02,183 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3212491 deg 2021-08-21 06:01:02,184 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -8.017973385651406e-05 deg 2021-08-21 06:01:02,185 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:01:02,401 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S200B1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2021-08-21 06:01:02,402 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1'] 2021-08-21 06:01:02,402 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 4 open slitlets 2021-08-21 06:01:02,431 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1389586 deg 2021-08-21 06:01:02,431 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3212491 deg 2021-08-21 06:01:02,431 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -8.017973385651406e-05 deg 2021-08-21 06:01:02,432 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:01:02,441 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:01:02,560 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2021-08-21 06:01:02,560 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:01:02,560 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2021-08-21 06:01:02,560 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2021-08-21 06:01:02,561 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 4 open slits in quadrant 5 2021-08-21 06:01:02,716 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 06:01:02,856 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:01:03,281 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jwtest1013001_01101_00001_nrs1_assign_wcs.fits 2021-08-21 06:01:03,281 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:01:03,397 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). 2021-08-21 06:01:03,398 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:01:03,398 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:01:03,399 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:01:03,507 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). 2021-08-21 06:01:03,508 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:01:03,508 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:01:03,509 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:01:03,613 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). 2021-08-21 06:01:03,614 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:01:03,614 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2021-08-21 06:01:03,615 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:01:03,721 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). 2021-08-21 06:01:03,722 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:01:03,740 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_FIXEDSLIT 2021-08-21 06:01:03,901 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A1 2021-08-21 06:01:03,902 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 711 2048 2021-08-21 06:01:03,902 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 158 205 2021-08-21 06:01:04,082 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:01:04,090 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 2021-08-21 06:01:04,091 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 2021-08-21 06:01:04,235 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200A2 2021-08-21 06:01:04,236 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 520 1955 2021-08-21 06:01:04,236 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 121 170 2021-08-21 06:01:04,415 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:01:04,423 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 2021-08-21 06:01:04,424 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 2021-08-21 06:01:04,717 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S400A1 2021-08-21 06:01:04,717 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 641 2048 2021-08-21 06:01:04,717 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 81 134 2021-08-21 06:01:04,898 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:01:04,906 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 2021-08-21 06:01:04,906 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 2021-08-21 06:01:05,052 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S1600A1 2021-08-21 06:01:05,053 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 665 2048 2021-08-21 06:01:05,053 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 61 91 2021-08-21 06:01:05,201 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:01:05,209 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 2021-08-21 06:01:05,209 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 2021-08-21 06:01:06,185 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jwtest1013001_01101_00001_nrs1_extract_2d.fits 2021-08-21 06:01:06,185 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:01:06,332 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_extract_2d.fits>,). 2021-08-21 06:01:06,333 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:01:06,340 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_FIXEDSLIT 2021-08-21 06:01:06,340 - stpipe.Spec2Pipeline.srctype - INFO - Input SRCTYAPT = None 2021-08-21 06:01:06,340 - stpipe.Spec2Pipeline.srctype - WARNING - SRCTYAPT keyword not found in input; using SRCTYPE instead 2021-08-21 06:01:06,340 - stpipe.Spec2Pipeline.srctype - INFO - Input source type is unknown; setting default SRCTYPE = POINT 2021-08-21 06:01:06,992 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in jwtest1013001_01101_00001_nrs1_srctype.fits 2021-08-21 06:01:06,992 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:01:07,130 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). 2021-08-21 06:01:07,133 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:01:07,133 - stpipe.Spec2Pipeline.master_background - INFO - Step skipped. 2021-08-21 06:01:07,134 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:01:07,256 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). 2021-08-21 06:01:07,257 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} 2021-08-21 06:01:07,283 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf 2021-08-21 06:01:07,829 - stpipe.Spec2Pipeline.wavecorr - WARNING - Primary slit name not found in input 2021-08-21 06:01:07,829 - stpipe.Spec2Pipeline.wavecorr - WARNING - Skipping wavecorr correction 2021-08-21 06:01:08,635 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in jwtest1013001_01101_00001_nrs1_wavecorr.fits 2021-08-21 06:01:08,636 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:01:08,793 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_wavecorr.fits>,). 2021-08-21 06:01:08,794 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:01:11,390 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A1 2021-08-21 06:01:21,723 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200A2 2021-08-21 06:01:33,133 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S400A1 2021-08-21 06:01:45,937 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S1600A1 2021-08-21 06:01:52,535 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jwtest1013001_01101_00001_nrs1_flat_field.fits 2021-08-21 06:01:52,536 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:01:52,693 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_flat_field.fits>,). 2021-08-21 06:01:52,694 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 06:01:52,722 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2021-08-21 06:01:52,789 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 06:01:53,339 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A1 2021-08-21 06:01:53,340 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A1 2021-08-21 06:01:53,361 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S200A2 2021-08-21 06:01:53,362 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S200A2 2021-08-21 06:01:53,383 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S400A1 2021-08-21 06:01:53,383 - stpipe.Spec2Pipeline.pathloss - WARNING - Cannot find matching pathloss model for S400A1 2021-08-21 06:01:53,383 - stpipe.Spec2Pipeline.pathloss - WARNING - Skipping pathloss correction for this slit 2021-08-21 06:01:53,383 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:01:53,383 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit S1600A1 2021-08-21 06:01:53,384 - stpipe.Spec2Pipeline.pathloss - INFO - Using aperture S1600A1 2021-08-21 06:01:54,252 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in jwtest1013001_01101_00001_nrs1_pathloss.fits 2021-08-21 06:01:54,252 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:01:54,417 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). 2021-08-21 06:01:54,418 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 06:01:54,419 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2021-08-21 06:01:54,419 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:01:54,570 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). 2021-08-21 06:01:54,571 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} 2021-08-21 06:01:54,611 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits 2021-08-21 06:01:54,611 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits 2021-08-21 06:01:55,157 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:01:55,157 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2021-08-21 06:01:55,157 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_FIXEDSLIT 2021-08-21 06:01:55,157 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2021-08-21 06:01:55,157 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2021-08-21 06:01:55,221 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A1 2021-08-21 06:01:55,221 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:01:55,228 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S200A2 2021-08-21 06:01:55,228 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:01:55,235 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S400A1 2021-08-21 06:01:55,235 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:01:55,242 - stpipe.Spec2Pipeline.photom - INFO - Working on slit S1600A1 2021-08-21 06:01:55,243 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:01:55,250 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:01:55,439 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_cal.fits>,). 2021-08-21 06:01:55,440 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:01:55,469 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:01:55,470 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:01:55,470 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:01:55,470 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:01:55,470 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:01:55,471 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:01:55,471 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure jwtest1013001_01101_00001_nrs1_cal.fits 2021-08-21 06:01:56,215 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:01:56,306 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1337) --> (34, 1337) 2021-08-21 06:01:56,331 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:01:56,411 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1337) --> (34, 1337) 2021-08-21 06:01:56,438 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:01:56,514 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1337) --> (34, 1337) 2021-08-21 06:01:56,541 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:01:56,619 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (47, 1337) --> (34, 1337) 2021-08-21 06:01:56,667 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 6.160517453 -66.584440409 6.162124376 -66.584440409 6.162124376 -66.583714709 6.160517453 -66.583714709 2021-08-21 06:01:57,033 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:01:57,118 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 1435) --> (34, 1435) 2021-08-21 06:01:57,146 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:01:57,232 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 1435) --> (34, 1435) 2021-08-21 06:01:57,261 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:01:57,344 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 1435) --> (34, 1435) 2021-08-21 06:01:57,373 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:01:57,460 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (49, 1435) --> (34, 1435) 2021-08-21 06:01:57,511 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 6.172480459 -66.581584860 6.174084141 -66.581584860 6.174084141 -66.580858976 6.172480459 -66.580858976 2021-08-21 06:01:57,912 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:01:58,001 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (53, 1407) --> (40, 1407) 2021-08-21 06:01:58,032 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:01:58,123 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (53, 1407) --> (40, 1407) 2021-08-21 06:01:58,155 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:01:58,243 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (53, 1407) --> (40, 1407) 2021-08-21 06:01:58,275 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:01:58,364 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (53, 1407) --> (40, 1407) 2021-08-21 06:01:58,421 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 6.167543711 -66.584854457 6.169438822 -66.584854457 6.169438822 -66.583998151 6.167543711 -66.583998151 2021-08-21 06:01:58,635 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:01:58,689 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (30, 1383) --> (17, 1383) 2021-08-21 06:01:58,702 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:01:58,757 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (30, 1383) --> (17, 1383) 2021-08-21 06:01:58,771 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:01:58,825 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (30, 1383) --> (17, 1383) 2021-08-21 06:01:58,840 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:01:58,894 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (30, 1383) --> (17, 1383) 2021-08-21 06:01:58,922 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 6.168307829 -66.585767548 6.169084867 -66.585767548 6.169084867 -66.585416602 6.168307829 -66.585416602 2021-08-21 06:01:59,367 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in jwtest1013001_01101_00001_nrs1_s2d.fits 2021-08-21 06:01:59,368 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:01:59,507 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_s2d.fits>,). 2021-08-21 06:01:59,508 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:01:59,533 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2021-08-21 06:01:59,549 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2021-08-21 06:01:59,587 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2021-08-21 06:01:59,587 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A1 2021-08-21 06:01:59,587 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:01:59,587 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 06:01:59,587 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 06:01:59,605 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:01:59,605 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1336, ystart=13.5, ystop=19.5 2021-08-21 06:01:59,824 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S200A2 2021-08-21 06:01:59,824 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:01:59,824 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 06:01:59,824 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 06:01:59,842 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:01:59,842 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1434, ystart=13.5, ystop=19.5 2021-08-21 06:02:00,074 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S400A1 2021-08-21 06:02:00,074 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:02:00,074 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 06:02:00,074 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 06:02:00,094 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:02:00,094 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1406, ystart=16.5, ystop=22.5 2021-08-21 06:02:00,323 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit S1600A1 2021-08-21 06:02:00,323 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:02:00,323 - stpipe.Spec2Pipeline.extract_1d - INFO - Can only compute source location for primary NIRSpec slit, 2021-08-21 06:02:00,323 - stpipe.Spec2Pipeline.extract_1d - INFO - so setting use_source_posn to False 2021-08-21 06:02:00,333 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:02:00,333 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1382, ystart=5.0, ystop=11.0 2021-08-21 06:02:00,700 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in jwtest1013001_01101_00001_nrs1_x1d.fits 2021-08-21 06:02:00,700 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:02:00,700 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 2021-08-21 06:02:00,700 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:02:01,385 - stpipe.Spec2Pipeline - INFO - Saved model in jwtest1013001_01101_00001_nrs1_cal.fits 2021-08-21 06:02:01,385 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jwtest1013001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 8438400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jwtest1013001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 8438400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jwtest1013001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 8438400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jwtest1013001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 8438400 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jwtest1013001_01101_00001_nrs1_rate.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0014.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:342 Science data does not allow MSA flagging. Skipping "msa_flagging". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:362 Science data does not allow barshadow correction. Skipping "barshadow". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S200B1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S200B1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 4 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 4 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1389586 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3212491 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -8.017973385651406e-05 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 4 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 4 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(256, 2048) from jwtest1013001_01101_00001_nrs1_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 711 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 711 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 158 205 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 158 205 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.160418766 -66.583714125 6.162095795 -66.584471478 6.162203945 -66.584433017 6.160526938 -66.583675654 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200A2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 520 1955 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 520 1955 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 121 170 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 121 170 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.172397448 -66.580865276 6.174066148 -66.581620581 6.174173384 -66.581582349 6.172504705 -66.580827034 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S400A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 641 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 641 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 81 134 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 81 134 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167427344 -66.584031436 6.169337167 -66.584894371 6.169548748 -66.584819067 6.167638973 -66.583956111 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S1600A1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 665 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 665 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 61 91 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 61 91 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 6.167855172 -66.585551195 6.168671819 -66.585919996 6.169510609 -66.585621566 6.168694043 -66.585252730 INFO stpipe.Spec2Pipeline.extract_2d:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None INFO stpipe.Spec2Pipeline.srctype:srctype.py:58 Input SRCTYAPT = None WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead WARNING stpipe.Spec2Pipeline.srctype:srctype.py:60 SRCTYAPT keyword not found in input; using SRCTYPE instead INFO stpipe.Spec2Pipeline.srctype:srctype.py:101 Input source type is unknown; setting default SRCTYPE = POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:101 Input source type is unknown; setting default SRCTYPE = POINT DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:119 primary_slit = NONE DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:119 primary_slit = NONE DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S200A2 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S400A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S400A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S1600A1 = EXTENDED DEBUG stpipe.Spec2Pipeline.srctype:srctype.py:125 slit S1600A1 = EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0001.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:43 Primary slit name not found in input WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:43 Primary slit name not found in input WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:44 Skipping wavecorr correction WARNING stpipe.Spec2Pipeline.wavecorr:wavecorr.py:44 Skipping wavecorr correction INFO stpipe.Spec2Pipeline.wavecorr:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0003.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0014.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16746 out of 62839 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16746 out of 62839 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 486 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 486 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 58 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 58 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 21018 out of 70315 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 21018 out of 70315 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 75 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S400A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 19145 out of 74571 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 19145 out of 74571 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 113 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 113 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 80 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 80 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18239 out of 41490 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18239 out of 41490 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 239 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1217 The table wavelength or flat-field data array contained 239 NaNs; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 40 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 40 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S400A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S400A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:431 No correction provided for slit 2. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:431 No correction provided for slit 2. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:421 Working on slit S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200A2 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S200B1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:pathloss.py:62 S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S1600A1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:724 Using aperture S1600A1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_pathloss.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0014.fits as <class 'jwst.datamodels.photom.NrsFsPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0026.fits as <class 'jwst.datamodels.pixelarea.NirspecSlitAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S200A2 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S400A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:213 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jwtest1013001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure jwtest1013001_01101_00001_nrs1_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 1 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 4 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1336.5), (-0.5, 46.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (47, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1337) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (47, 1337) --> (34, 1337) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.160517453 -66.584440409 6.162124376 -66.584440409 6.162124376 -66.583714709 6.160517453 -66.583714709 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.160517453 -66.584440409 6.162124376 -66.584440409 6.162124376 -66.583714709 6.160517453 -66.583714709 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1434.5), (-0.5, 48.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (49, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1435) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (49, 1435) --> (34, 1435) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.172480459 -66.581584860 6.174084141 -66.581584860 6.174084141 -66.580858976 6.172480459 -66.580858976 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.172480459 -66.581584860 6.174084141 -66.581584860 6.174084141 -66.580858976 6.172480459 -66.580858976 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1406.5), (-0.5, 52.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (53, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 1407) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (53, 1407) --> (40, 1407) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.167543711 -66.584854457 6.169438822 -66.584854457 6.169438822 -66.583998151 6.167543711 -66.583998151 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.167543711 -66.584854457 6.169438822 -66.584854457 6.169438822 -66.583998151 6.167543711 -66.583998151 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1382.5), (-0.5, 29.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (30, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 1383) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (30, 1383) --> (17, 1383) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.168307829 -66.585767548 6.169084867 -66.585767548 6.169084867 -66.585416602 6.168307829 -66.585416602 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 6.168307829 -66.585767548 6.169084867 -66.585767548 6.169084867 -66.585416602 6.168307829 -66.585416602 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from jwtest1013001_01101_00001_nrs1_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.0], [20.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.0], [20.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1336, ystart=13.5, ystop=19.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1336, ystart=13.5, ystop=19.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S200A2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.0], [20.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[13.0], [20.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1434, ystart=13.5, ystop=19.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1434, ystart=13.5, ystop=19.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S400A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S400A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[16.0], [23.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[16.0], [23.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1406, ystart=16.5, ystop=22.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1406, ystart=16.5, ystop=22.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit S1600A1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2935 Can only compute source location for primary NIRSpec slit, INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2936 so setting use_source_posn to False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[4.5], [11.5]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[4.5], [11.5]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1382, ystart=5.0, ystop=11.0 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1382, ystart=5.0, ystop=11.0 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec2_run_pipeline0/jwtest1013001_01101_00001_nrs1 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jwtest1013001_01101_00001_nrs1_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 8582400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 8582400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 8582400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 8582400 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_nirspec_fs_spec2[ALLSLITS-subarray-x1d] | 0.25 | |
|
-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 959040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 959040 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 959040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec2/jwtest1013001_01101_00001_nrs1_x1d.fits HTTP/1.1" 200 959040 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_pathloss_corrpars | 3.85 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:02:07,041 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2021-08-21 06:02:07,165 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2021-08-21 06:02:07,166 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:02:07,210 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2021-08-21 06:02:07,278 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 06:02:08,130 - stpipe.PathLossStep - INFO - Working on slit S200A1 2021-08-21 06:02:08,130 - stpipe.PathLossStep - INFO - Using aperture S200A1 2021-08-21 06:02:08,157 - stpipe.PathLossStep - INFO - Working on slit S200A2 2021-08-21 06:02:08,158 - stpipe.PathLossStep - INFO - Using aperture S200A2 2021-08-21 06:02:08,184 - stpipe.PathLossStep - INFO - Working on slit S400A1 2021-08-21 06:02:08,185 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2021-08-21 06:02:08,185 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2021-08-21 06:02:08,185 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:02:08,185 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2021-08-21 06:02:08,185 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2021-08-21 06:02:08,208 - stpipe.PathLossStep - INFO - Working on slit S200B1 2021-08-21 06:02:08,209 - stpipe.PathLossStep - INFO - Using aperture S200B1 2021-08-21 06:02:08,231 - stpipe.PathLossStep - INFO - Step PathLossStep done 2021-08-21 06:02:08,380 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2021-08-21 06:02:08,381 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:02:08,388 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 06:02:09,079 - stpipe.PathLossStep - INFO - Working on slit S200A1 2021-08-21 06:02:09,089 - stpipe.PathLossStep - INFO - Working on slit S200A2 2021-08-21 06:02:09,099 - stpipe.PathLossStep - INFO - Working on slit S400A1 2021-08-21 06:02:09,099 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:02:09,099 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2021-08-21 06:02:09,107 - stpipe.PathLossStep - INFO - Working on slit S200B1 2021-08-21 06:02:09,116 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_corrpars0/nrs1_flat_field.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_corrpars0/nrs1_flat_field.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PathLossStep:step.py:321 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_pathloss_inverse | 4.18 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:02:10,907 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2021-08-21 06:02:11,027 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2021-08-21 06:02:11,028 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:02:11,051 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2021-08-21 06:02:11,117 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 06:02:11,957 - stpipe.PathLossStep - INFO - Working on slit S200A1 2021-08-21 06:02:11,958 - stpipe.PathLossStep - INFO - Using aperture S200A1 2021-08-21 06:02:11,984 - stpipe.PathLossStep - INFO - Working on slit S200A2 2021-08-21 06:02:11,984 - stpipe.PathLossStep - INFO - Using aperture S200A2 2021-08-21 06:02:12,011 - stpipe.PathLossStep - INFO - Working on slit S400A1 2021-08-21 06:02:12,011 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2021-08-21 06:02:12,011 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2021-08-21 06:02:12,011 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:02:12,011 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2021-08-21 06:02:12,012 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2021-08-21 06:02:12,035 - stpipe.PathLossStep - INFO - Working on slit S200B1 2021-08-21 06:02:12,035 - stpipe.PathLossStep - INFO - Using aperture S200B1 2021-08-21 06:02:12,057 - stpipe.PathLossStep - INFO - Step PathLossStep done 2021-08-21 06:02:12,205 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2021-08-21 06:02:12,207 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2021-08-21 06:02:12,234 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2021-08-21 06:02:12,301 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 06:02:13,204 - stpipe.PathLossStep - INFO - Working on slit S200A1 2021-08-21 06:02:13,205 - stpipe.PathLossStep - INFO - Using aperture S200A1 2021-08-21 06:02:13,231 - stpipe.PathLossStep - INFO - Working on slit S200A2 2021-08-21 06:02:13,232 - stpipe.PathLossStep - INFO - Using aperture S200A2 2021-08-21 06:02:13,258 - stpipe.PathLossStep - INFO - Working on slit S400A1 2021-08-21 06:02:13,258 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2021-08-21 06:02:13,258 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2021-08-21 06:02:13,258 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:02:13,258 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2021-08-21 06:02:13,259 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2021-08-21 06:02:13,283 - stpipe.PathLossStep - INFO - Working on slit S200B1 2021-08-21 06:02:13,283 - stpipe.PathLossStep - INFO - Using aperture S200B1 2021-08-21 06:02:13,304 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_inverse0/nrs1_flat_field.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_inverse0/nrs1_flat_field.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PathLossStep:step.py:321 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec2.py::test_pathloss_source_type | 2.86 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:02:14,929 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2021-08-21 06:02:15,058 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). 2021-08-21 06:02:15,059 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} 2021-08-21 06:02:15,083 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits 2021-08-21 06:02:15,168 - stpipe.PathLossStep - INFO - Input exposure type is NRS_FIXEDSLIT 2021-08-21 06:02:16,064 - stpipe.PathLossStep - INFO - Working on slit S200A1 2021-08-21 06:02:16,064 - stpipe.PathLossStep - INFO - Using aperture S200A1 2021-08-21 06:02:16,094 - stpipe.PathLossStep - INFO - Working on slit S200A2 2021-08-21 06:02:16,094 - stpipe.PathLossStep - INFO - Using aperture S200A2 2021-08-21 06:02:16,122 - stpipe.PathLossStep - INFO - Working on slit S400A1 2021-08-21 06:02:16,122 - stpipe.PathLossStep - WARNING - Cannot find matching pathloss model for S400A1 2021-08-21 06:02:16,122 - stpipe.PathLossStep - WARNING - Skipping pathloss correction for this slit 2021-08-21 06:02:16,122 - stpipe.PathLossStep - WARNING - No correction provided for slit 2. Skipping 2021-08-21 06:02:16,123 - stpipe.PathLossStep - INFO - Working on slit S1600A1 2021-08-21 06:02:16,123 - stpipe.PathLossStep - INFO - Using aperture S1600A1 2021-08-21 06:02:16,147 - stpipe.PathLossStep - INFO - Working on slit S200B1 2021-08-21 06:02:16,148 - stpipe.PathLossStep - INFO - Using aperture S200B1 2021-08-21 06:02:16,171 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_flat_field.fits HTTP/1.1" 200 15500160 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_source_type0/nrs1_flat_field.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_source_type0/nrs1_flat_field.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PathLossStep:step.py:321 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from nrs1_flat_field.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0001.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_FIXEDSLIT DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200A2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S400A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:772 Cannot find matching pathloss model for S400A1 WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:773 Skipping pathloss correction for this slit WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping WARNING stpipe.PathLossStep:pathloss.py:431 No correction provided for slit 2. Skipping INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S1600A1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 INFO stpipe.PathLossStep:pathloss.py:421 Working on slit S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200A2 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 DEBUG stpipe.PathLossStep:pathloss.py:62 S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 INFO stpipe.PathLossStep:pathloss.py:724 Using aperture S200B1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_fs_spec3.py::test_nirspec_fs_spec3[cal] | 36.09 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:02:21,675 - stpipe.Spec3Pipeline - INFO - Spec3Pipeline instance created. 2021-08-21 06:02:21,676 - stpipe.Spec3Pipeline.assign_mtwcs - INFO - AssignMTWcsStep instance created. 2021-08-21 06:02:21,677 - stpipe.Spec3Pipeline.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:02:21,678 - stpipe.Spec3Pipeline.mrs_imatch - INFO - MRSIMatchStep instance created. 2021-08-21 06:02:21,679 - stpipe.Spec3Pipeline.outlier_detection - INFO - OutlierDetectionStep instance created. 2021-08-21 06:02:21,680 - stpipe.Spec3Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:02:21,681 - stpipe.Spec3Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:02:21,682 - stpipe.Spec3Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:02:21,683 - stpipe.Spec3Pipeline.combine_1d - INFO - Combine1dStep instance created. 2021-08-21 06:02:21,683 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:02:21,683 - stpipe - INFO - OS: Linux 2021-08-21 06:02:21,799 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_20180725t035735_spec3_001_asn.json',). 2021-08-21 06:02:21,805 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} 2021-08-21 06:02:22,134 - stpipe.Spec3Pipeline - INFO - Prefetching reference files for dataset: 'jw93045010001_02103_00001_nrs1_cal.fits' reftypes = ['apcorr', 'cubepar', 'drizpars', 'extract1d', 'resol'] 2021-08-21 06:02:22,138 - stpipe.Spec3Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. 2021-08-21 06:02:22,140 - stpipe.Spec3Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:02:22,140 - stpipe.Spec3Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:02:22,140 - stpipe.Spec3Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. 2021-08-21 06:02:22,141 - stpipe.Spec3Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:02:22,141 - stpipe.Spec3Pipeline - INFO - Starting calwebb_spec3 ... 2021-08-21 06:02:24,429 - stpipe.Spec3Pipeline - INFO - Convert from exposure-based to source-based data. 2021-08-21 06:02:24,429 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02103_00001_nrs1_cal.fits 2021-08-21 06:02:24,525 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02103_00001_nrs2_cal.fits 2021-08-21 06:02:24,562 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02101_00001_nrs1_cal.fits 2021-08-21 06:02:24,598 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02102_00001_nrs1_cal.fits 2021-08-21 06:02:24,695 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02102_00001_nrs2_cal.fits 2021-08-21 06:02:24,879 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits 2021-08-21 06:02:26,146 - stpipe.Spec3Pipeline - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits 2021-08-21 06:02:26,297 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:02:26,298 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:02:26,301 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 5 inputs 2021-08-21 06:02:28,360 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:28,529 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:28,766 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:29,037 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:29,247 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:29,336 - stpipe.Spec3Pipeline.outlier_detection - INFO - Generating median from 3 images 2021-08-21 06:02:29,364 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2021-08-21 06:02:29,642 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (57, 1296) <-- (40, 3344) 2021-08-21 06:02:29,980 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (59, 2048) <-- (40, 3344) 2021-08-21 06:02:30,270 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (57, 1296) <-- (40, 3344) 2021-08-21 06:02:30,795 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (59, 2048) <-- (40, 3344) 2021-08-21 06:02:31,131 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (59, 2048) <-- (40, 3344) 2021-08-21 06:02:33,662 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits 2021-08-21 06:02:33,663 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:02:33,808 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:02:33,809 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:02:33,913 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:02:33,914 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:02:33,914 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:02:33,915 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:02:33,915 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:02:33,915 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:02:35,969 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:02:36,666 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:02:36,756 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:36,920 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:37,053 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:37,220 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:37,405 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:37,451 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:02:37,538 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:37,706 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:37,838 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:38,002 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:38,185 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:38,238 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:02:38,326 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:38,491 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:38,626 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:38,789 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:38,971 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:39,024 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:02:39,112 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:39,279 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:39,413 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (57, 1296) --> (40, 3344) 2021-08-21 06:02:39,580 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:39,766 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (59, 2048) --> (40, 3344) 2021-08-21 06:02:39,874 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 80.486357762 -69.498737258 80.488513723 -69.498737258 80.488513723 -69.497882512 80.486357762 -69.497882512 2021-08-21 06:02:40,256 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits 2021-08-21 06:02:40,256 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:02:40,440 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(40, 3344) from jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits>,). 2021-08-21 06:02:40,441 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:02:40,510 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2021-08-21 06:02:40,547 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2021-08-21 06:02:40,586 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2021-08-21 06:02:40,587 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:02:40,633 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying position offset of 1.16 to ystart and ystop 2021-08-21 06:02:40,634 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:02:40,634 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=3343, ystart=17.662763013285904, ystop=23.662763013285904 2021-08-21 06:02:41,118 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:02:46,392 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits 2021-08-21 06:02:46,392 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:02:46,630 - stpipe.Spec3Pipeline - INFO - Saved model in jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_cal.fits 2021-08-21 06:02:46,793 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:02:46,795 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:02:46,798 - stpipe.Spec3Pipeline.outlier_detection - WARNING - Input only contains 1 exposure 2021-08-21 06:02:46,798 - stpipe.Spec3Pipeline.outlier_detection - WARNING - Outlier detection step will be skipped 2021-08-21 06:02:46,799 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:02:46,950 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:02:46,951 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:02:47,052 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:02:47,053 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:02:47,053 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:02:47,053 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:02:47,053 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:02:47,054 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:02:47,378 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:02:48,063 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:02:48,150 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (55, 1295) --> (36, 1295) 2021-08-21 06:02:48,177 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:02:48,286 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (55, 1295) --> (36, 1295) 2021-08-21 06:02:48,315 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:02:48,401 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (55, 1295) --> (36, 1295) 2021-08-21 06:02:48,429 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:02:48,520 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (55, 1295) --> (36, 1295) 2021-08-21 06:02:48,576 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 80.486463683 -69.498690849 80.488398520 -69.498690849 80.488398520 -69.497923769 80.486463683 -69.497923769 2021-08-21 06:02:48,964 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_s2d.fits 2021-08-21 06:02:48,964 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:02:49,146 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(36, 1295) from jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_s2d.fits>,). 2021-08-21 06:02:49,147 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:02:49,218 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json 2021-08-21 06:02:49,252 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits 2021-08-21 06:02:49,292 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_FIXEDSLIT 2021-08-21 06:02:49,292 - stpipe.Spec3Pipeline.extract_1d - WARNING - Pixel area (solid angle) is not populated; the flux will not be correct. 2021-08-21 06:02:49,292 - stpipe.Spec3Pipeline.extract_1d - WARNING - Pixel area (solid angle) is not populated; the flux will not be correct. 2021-08-21 06:02:49,293 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:02:49,312 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying position offset of 1.25 to ystart and ystop 2021-08-21 06:02:49,312 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:02:49,312 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=1294, ystart=15.746647142856954, ystop=21.746647142856954 2021-08-21 06:02:49,521 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:02:51,616 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_x1d.fits 2021-08-21 06:02:51,616 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:02:51,616 - stpipe.Spec3Pipeline - INFO - Ending calwebb_spec3 2021-08-21 06:02:51,616 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045-o010_20180725t035735_spec3_001_asn.json HTTP/1.1" 200 3449 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045-o010_20180725t035735_spec3_001_asn.json HTTP/1.1" 200 3449 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045-o010_20180725t035735_spec3_001_asn.json HTTP/1.1" 200 3449 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045-o010_20180725t035735_spec3_001_asn.json HTTP/1.1" 200 3449 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs1_cal.fits HTTP/1.1" 200 2220480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs1_cal.fits HTTP/1.1" 200 1863360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs1_cal.fits HTTP/1.1" 200 1863360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs1_cal.fits HTTP/1.1" 200 1863360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs1_cal.fits HTTP/1.1" 200 1863360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw93045010001_02101_00001_nrs2_cal.fits HTTP/1.1" 200 3530880 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC3PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC3PIPELINE parameters from CRDS DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:pipeline.py:182 No PARS-SPEC3PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC3PIPELINE reference files found. INFO stpipe.Spec3Pipeline:step.py:321 Spec3Pipeline instance created. INFO stpipe.Spec3Pipeline.assign_mtwcs:step.py:321 AssignMTWcsStep instance created. INFO stpipe.Spec3Pipeline.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe.Spec3Pipeline.mrs_imatch:step.py:321 MRSIMatchStep instance created. INFO stpipe.Spec3Pipeline.outlier_detection:step.py:321 OutlierDetectionStep instance created. INFO stpipe.Spec3Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec3Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec3Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe.Spec3Pipeline.combine_1d:step.py:321 Combine1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec3Pipeline:step.py:367 Step Spec3Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045-o010_20180725t035735_spec3_001_asn.json',). INFO stpipe.Spec3Pipeline:step.py:371 Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science']: DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science']: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec3Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw93045010001_02103_00001_nrs1_cal.fits' reftypes = ['apcorr', 'cubepar', 'drizpars', 'extract1d', 'resol'] INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec3Pipeline:calwebb_spec3.py:72 Starting calwebb_spec3 ... DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science', 'background']: DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science', 'background']: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02102_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw93045010001_02101_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02101_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02101_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02102_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02102_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02102_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02102_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02101_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0/jw93045010001_02101_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec3Pipeline:calwebb_spec3.py:156 Convert from exposure-based to source-based data. INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02103_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02102_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw93045010001_02101_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 3 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:191 Performing outlier detection on 5 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:153 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 4.453498803827751 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 4.453498803827751 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 4.454246411483254 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 4.454246411483254 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 40.96142344497608 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 40.96142344497608 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (57, 1296) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (57, 1296) <-- (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (57, 1296) <-- (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (59, 2048) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (59, 2048) <-- (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (59, 2048) <-- (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (57, 1296) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (57, 1296) <-- (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (57, 1296) <-- (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (59, 2048) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (59, 2048) <-- (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (59, 2048) <-- (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (59, 2048) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (59, 2048) <-- (40, 3344) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (59, 2048) <-- (40, 3344) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 73872 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 73872 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 73865 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 73865 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 120832 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 120832 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 120826 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 120826 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 73872 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 73872 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 73865 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 73865 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 120832 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 120832 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 120819 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 120819 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 120832 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 120832 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 120822 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 120822 INFO stpipe.Spec3Pipeline.outlier_detection:step.py:928 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1295.5), (-0.5, 56.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (57, 1296) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (57, 1296) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 2047.5), (-0.5, 58.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (59, 2048) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (59, 2048) --> (40, 3344) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 80.486357762 -69.498737258 80.488513723 -69.498737258 80.488513723 -69.497882512 80.486357762 -69.497882512 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 80.486357762 -69.498737258 80.488513723 -69.498737258 80.488513723 -69.497882512 80.486357762 -69.497882512 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(40, 3344) from jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 1671 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 1671 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1335 Target spectrum is at 20.66 in the cross-dispersion direction DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1335 Target spectrum is at 20.66 in the cross-dispersion direction DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 19.50 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 19.50 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3988 Computed source offset=1.16, source location=20.66 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3988 Computed source offset=1.16, source location=20.66 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:1654 Applying position offset of 1.16 to ystart and ystop INFO stpipe.Spec3Pipeline.extract_1d:extract.py:1654 Applying position offset of 1.16 to ystart and ystop DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 1.162763013285904 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 1.162763013285904 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[17.162763013285904], [24.162763013285904]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[17.162763013285904], [24.162763013285904]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=3343, ystart=17.662763013285904, ystop=23.662763013285904 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=3343, ystart=17.662763013285904, ystop=23.662763013285904 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". WARNING stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:186 Input only contains 1 exposure WARNING stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:187 Outlier detection step will be skipped INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (36, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (36, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (36, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1294.5), (-0.5, 54.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (55, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (36, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (55, 1295) --> (36, 1295) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 80.486463683 -69.498690849 80.488398520 -69.498690849 80.488398520 -69.497923769 80.486463683 -69.497923769 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 80.486463683 -69.498690849 80.488398520 -69.498690849 80.488398520 -69.497923769 80.486463683 -69.497923769 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(36, 1295) from jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0004.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0003.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_FIXEDSLIT WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:3119 Pixel area (solid angle) is not populated; the flux will not be correct. WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:3119 Pixel area (solid angle) is not populated; the flux will not be correct. WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:3322 Pixel area (solid angle) is not populated; the flux will not be correct. WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:3322 Pixel area (solid angle) is not populated; the flux will not be correct. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 7 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 647 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 647 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1335 Target spectrum is at 18.75 in the cross-dispersion direction DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1335 Target spectrum is at 18.75 in the cross-dispersion direction DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 17.50 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 17.50 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3988 Computed source offset=1.25, source location=18.75 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3988 Computed source offset=1.25, source location=18.75 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:1654 Applying position offset of 1.25 to ystart and ystop INFO stpipe.Spec3Pipeline.extract_1d:extract.py:1654 Applying position offset of 1.25 to ystart and ystop DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 1.246647142856954 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 1.246647142856954 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[15.246647142856954], [22.246647142856954]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[15.246647142856954], [22.246647142856954]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1294, ystart=15.746647142856954, ystop=21.746647142856954 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1294, ystart=15.746647142856954, ystop=21.746647142856954 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw93045-o010_s00000_nirspec_f290lp-g395h-subs400a1_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:calwebb_spec3.py:234 Ending calwebb_spec3 INFO stpipe.Spec3Pipeline:step.py:470 Step Spec3Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits HTTP/1.1" 200 14901120 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_spec3/jw93045-o010_s00003_nirspec_f290lp-g395h-subs400a1_cal.fits HTTP/1.1" 200 14901120 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_image2.py::test_nirspec_image2 | 8.48 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:04:28,742 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created. 2021-08-21 06:04:28,743 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:04:28,744 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:04:28,745 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:04:28,746 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:04:28,747 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created. 2021-08-21 06:04:28,747 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:04:28,747 - stpipe - INFO - OS: Linux 2021-08-21 06:04:29,207 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits',). 2021-08-21 06:04:29,211 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}}} 2021-08-21 06:04:29,362 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw84600010001_02102_00001_nrs2_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'drizpars', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:04:29,382 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is 'N/A'. 2021-08-21 06:04:29,382 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:04:29,383 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:04:29,385 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'. 2021-08-21 06:04:29,385 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf'. 2021-08-21 06:04:29,386 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:04:29,386 - stpipe.Image2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:04:29,386 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'. 2021-08-21 06:04:29,386 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:04:29,386 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits'. 2021-08-21 06:04:29,388 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf'. 2021-08-21 06:04:29,390 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:04:29,391 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:04:29,391 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:04:29,392 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:04:29,392 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:04:29,393 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:04:29,394 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is 'N/A'. 2021-08-21 06:04:29,394 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:04:29,395 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'. 2021-08-21 06:04:29,395 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:04:29,395 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:04:29,396 - stpipe.Image2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:04:29,396 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ... 2021-08-21 06:04:29,397 - stpipe.Image2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 2021-08-21 06:04:29,397 - stpipe.Image2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits ... 2021-08-21 06:04:29,657 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). 2021-08-21 06:04:29,658 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:04:29,827 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.196992189 deg 2021-08-21 06:04:29,827 - stpipe.Image2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.344913125 deg 2021-08-21 06:04:29,827 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_y correction: 0.0016337351377937479 deg 2021-08-21 06:04:29,828 - stpipe.Image2Pipeline.assign_wcs - INFO - theta_x correction: 0.00011189912410338978 deg 2021-08-21 06:04:30,018 - stpipe.Image2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_confirm pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 06:04:30,143 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 2021-08-21 06:04:30,143 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 2021-08-21 06:04:30,143 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:04:30,155 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:04:30,266 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). 2021-08-21 06:04:30,267 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:04:32,925 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:04:33,064 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). 2021-08-21 06:04:33,065 - stpipe.Image2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None} 2021-08-21 06:04:33,088 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: N/A 2021-08-21 06:04:33,088 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: N/A 2021-08-21 06:04:33,088 - stpipe.Image2Pipeline.photom - WARNING - No PHOTOM reference file found 2021-08-21 06:04:33,088 - stpipe.Image2Pipeline.photom - WARNING - Photom step will be skipped 2021-08-21 06:04:33,300 - stpipe.Image2Pipeline.photom - INFO - Step photom done 2021-08-21 06:04:33,300 - stpipe.Image2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 2021-08-21 06:04:33,301 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2 2021-08-21 06:04:33,580 - stpipe.Image2Pipeline - INFO - Saved model in jw84600010001_02102_00001_nrs2_cal.fits 2021-08-21 06:04:33,580 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jw84600010001_02102_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jw84600010001_02102_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jw84600010001_02102_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/jw84600010001_02102_00001_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-IMAGE2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-IMAGE2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-IMAGE2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-IMAGE2PIPELINE reference files found. INFO stpipe.Image2Pipeline:step.py:321 Image2Pipeline instance created. INFO stpipe.Image2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Image2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Image2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Image2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Image2Pipeline.resample:step.py:321 ResampleStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Image2Pipeline:step.py:367 Step Image2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits',). INFO stpipe.Image2Pipeline:step.py:371 Step Image2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_bsub': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None}, 'resample': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}}} DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Image2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw84600010001_02102_00001_nrs2_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'drizpars', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for AREA reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Image2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Image2Pipeline:calwebb_image2.py:49 Starting calwebb_image2 ... INFO stpipe.Image2Pipeline:calwebb_image2.py:58 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 INFO stpipe.Image2Pipeline:calwebb_image2.py:125 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits ... DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Image2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). INFO stpipe.Image2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.196992189 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.196992189 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.344913125 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.344913125 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.0016337351377937479 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.0016337351377937479 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.00011189912410338978 deg INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.00011189912410338978 deg DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_confirm pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Image2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_confirm pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0038.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.assign_wcs:util.py:957 Update S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:util.py:957 Update S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:81 assign_wcs updated S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:81 assign_wcs updated S_REGION to POLYGON ICRS 6.082169507 -66.574485311 6.182816799 -66.619097807 6.295411405 -66.579726772 6.191732685 -66.535860807 INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Image2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Image2Pipeline.flat_field:step.py:367 Step flat_field running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). INFO stpipe.Image2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:72 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Image2Pipeline.flat_field:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.Image2Pipeline.flat_field:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:197 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FFLAT DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:199 No reference found for type SFLAT DEBUG stpipe.Image2Pipeline.flat_field:flat_field_step.py:199 No reference found for type DFLAT DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.flat_field:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.Image2Pipeline.flat_field:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Image2Pipeline.flat_field:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Image2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Image2Pipeline.photom:step.py:367 Step photom running with args (<ImageModel(2048, 2048) from jw84600010001_02102_00001_nrs2_rate.fits>,). INFO stpipe.Image2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20', 'inverse': False, 'source_type': None} DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:photom_step.py:33 Input is ImageModel DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.photom:photom_step.py:52 Using photom reference file: N/A INFO stpipe.Image2Pipeline.photom:photom_step.py:53 Using area reference file: N/A WARNING stpipe.Image2Pipeline.photom:photom_step.py:57 No PHOTOM reference file found WARNING stpipe.Image2Pipeline.photom:photom_step.py:58 Photom step will be skipped DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Image2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Image2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Image2Pipeline:calwebb_image2.py:164 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_image20/jw84600010001_02102_00001_nrs2 INFO stpipe.Image2Pipeline:calwebb_image2.py:80 ... ending calwebb_image2 INFO stpipe.Image2Pipeline:step.py:928 Saved model in jw84600010001_02102_00001_nrs2_cal.fits INFO stpipe.Image2Pipeline:step.py:470 Step Image2Pipeline done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/jw84600010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 100782720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/jw84600010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 100782720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/jw84600010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 100782720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/jw84600010001_02102_00001_nrs2_cal.fits HTTP/1.1" 200 100782720 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_image2.py::test_flat_field_step_user_supplied_flat | 5.40 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:04:37,424 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:04:37,565 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits',). 2021-08-21 06:04:37,566 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits', 'inverse': False} 2021-08-21 06:04:37,869 - stpipe.FlatFieldStep - INFO - User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits given. Ignoring all flat reference files and flat creation. 2021-08-21 06:04:38,322 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_flat.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_flat.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_flat.fits HTTP/1.1" 200 83931840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_flat.fits HTTP/1.1" 200 83931840 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits',). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is ImageModel of exposure type NRS_CONFIRM INFO stpipe.FlatFieldStep:flat_field_step.py:94 User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits as <class 'jwst.datamodels.nirspec_flat.NirspecFlatModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp1/usf_flat.fits as <class 'jwst.datamodels.nirspec_flat.NirspecFlatModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 100782720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 100782720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 100782720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_image2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 100782720 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_image2.py::test_ff_inv | 3.25 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:04:42,097 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:04:42,325 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2021-08-21 06:04:42,326 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:04:42,904 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2021-08-21 06:04:42,916 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:04:43,155 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2021-08-21 06:04:43,156 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:04:43,780 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_ff_inv1/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_ff_inv1/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type FFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type SFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type DFLAT DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type FFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type SFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type DFLAT DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_image2.py::test_correction_pars | 2.73 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:04:44,981 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:04:45,262 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2021-08-21 06:04:45,264 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:04:45,829 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2021-08-21 06:04:46,070 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). 2021-08-21 06:04:46,072 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flatfieldstep', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:04:46,079 - stpipe.FlatFieldStep - INFO - Using flat field from correction pars <FlatModel(2048, 2048) from jwst_nirspec_flat_0066.fits> 2021-08-21 06:04:46,510 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/imaging/usf_assign_wcs.fits HTTP/1.1" 200 83995200 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_correction_pars0/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_correction_pars0/usf_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is ImageModel of exposure type NRS_CONFIRM DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:701 Input model type NirspecFlatModel does not match the requested model <class 'jwst.datamodels.flat.FlatModel'>. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using FLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_flat_0066.fits DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type FFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type SFLAT DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type DFLAT DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<ImageModel(2048, 2048) from usf_assign_wcs.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flatfieldstep', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is ImageModel of exposure type NRS_CONFIRM INFO stpipe.FlatFieldStep:flat_field_step.py:108 Using flat field from correction pars <FlatModel(2048, 2048) from jwst_nirspec_flat_0066.fits> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:flat_field.py:109 Flat field correction for NIRSpec imaging data. DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.FlatFieldStep:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dq_init] | 95.73 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:04:53,696 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf 2021-08-21 06:04:53,712 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created. 2021-08-21 06:04:53,713 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2021-08-21 06:04:53,713 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created. 2021-08-21 06:04:53,714 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created. 2021-08-21 06:04:53,715 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created. 2021-08-21 06:04:53,715 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created. 2021-08-21 06:04:53,716 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created. 2021-08-21 06:04:53,717 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created. 2021-08-21 06:04:53,717 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2021-08-21 06:04:53,718 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created. 2021-08-21 06:04:53,719 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created. 2021-08-21 06:04:53,719 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2021-08-21 06:04:53,720 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created. 2021-08-21 06:04:53,721 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created. 2021-08-21 06:04:53,722 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created. 2021-08-21 06:04:53,723 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2021-08-21 06:04:53,723 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2021-08-21 06:04:53,723 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:04:53,723 - stpipe - INFO - OS: Linux 2021-08-21 06:04:53,937 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits',). 2021-08-21 06:04:53,946 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}}} 2021-08-21 06:04:54,330 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw0010010_11010_nrs1_chimera_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] 2021-08-21 06:04:54,341 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. 2021-08-21 06:04:54,343 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. 2021-08-21 06:04:54,345 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. 2021-08-21 06:04:54,346 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. 2021-08-21 06:04:54,348 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'. 2021-08-21 06:04:54,348 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. 2021-08-21 06:04:54,350 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. 2021-08-21 06:04:54,352 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2021-08-21 06:04:54,352 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2021-08-21 06:04:54,353 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. 2021-08-21 06:04:54,354 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. 2021-08-21 06:04:54,356 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'. 2021-08-21 06:04:54,356 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'. 2021-08-21 06:04:54,356 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ... 2021-08-21 06:04:54,884 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). 2021-08-21 06:04:54,885 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:04:55,264 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed 2021-08-21 06:04:55,265 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped 2021-08-21 06:04:55,266 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done 2021-08-21 06:04:55,369 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). 2021-08-21 06:04:55,369 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:04:55,388 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits 2021-08-21 06:04:56,282 - stpipe.Detector1Pipeline.dq_init - INFO - Saved model in jw0010010_11010_nrs1_chimera_dq_init.fits 2021-08-21 06:04:56,283 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done 2021-08-21 06:04:56,425 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dq_init.fits>,). 2021-08-21 06:04:56,426 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:04:56,445 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits 2021-08-21 06:04:57,973 - stpipe.Detector1Pipeline.saturation - INFO - Detected 47202 saturated pixels 2021-08-21 06:04:58,065 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels 2021-08-21 06:04:58,421 - stpipe.Detector1Pipeline.saturation - INFO - Saved model in jw0010010_11010_nrs1_chimera_saturation.fits 2021-08-21 06:04:58,421 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done 2021-08-21 06:04:58,567 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). 2021-08-21 06:04:58,568 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:04:58,568 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped. 2021-08-21 06:04:58,569 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done 2021-08-21 06:04:58,675 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). 2021-08-21 06:04:58,676 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:04:58,695 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits 2021-08-21 06:04:59,771 - stpipe.Detector1Pipeline.superbias - INFO - Saved model in jw0010010_11010_nrs1_chimera_superbias.fits 2021-08-21 06:04:59,771 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done 2021-08-21 06:04:59,927 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_superbias.fits>,). 2021-08-21 06:04:59,928 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2021-08-21 06:04:59,947 - stpipe.Detector1Pipeline.refpix - INFO - Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits 2021-08-21 06:05:26,389 - stpipe.Detector1Pipeline.refpix - INFO - Saved model in jw0010010_11010_nrs1_chimera_refpix.fits 2021-08-21 06:05:26,390 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done 2021-08-21 06:05:26,692 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_refpix.fits>,). 2021-08-21 06:05:26,693 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:05:26,714 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits 2021-08-21 06:05:26,830 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored 2021-08-21 06:05:27,943 - stpipe.Detector1Pipeline.linearity - INFO - Saved model in jw0010010_11010_nrs1_chimera_linearity.fits 2021-08-21 06:05:27,943 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done 2021-08-21 06:05:28,113 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_linearity.fits>,). 2021-08-21 06:05:28,114 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None} 2021-08-21 06:05:28,291 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits 2021-08-21 06:05:33,471 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=7, nframes=1, groupgap=0 2021-08-21 06:05:33,471 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=65, nframes=1, groupgap=0 2021-08-21 06:05:34,695 - stpipe.Detector1Pipeline.dark_current - INFO - Saved model in jw0010010_11010_nrs1_chimera_dark_current.fits 2021-08-21 06:05:34,695 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done 2021-08-21 06:05:35,454 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dark_current.fits>,). 2021-08-21 06:05:35,456 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} 2021-08-21 06:05:35,504 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 200 sigma 2021-08-21 06:05:35,612 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits 2021-08-21 06:05:35,743 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits 2021-08-21 06:05:35,811 - stpipe.Detector1Pipeline.jump - INFO - Using 1 core for jump detection 2021-08-21 06:05:36,280 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method 2021-08-21 06:05:36,511 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1: 2021-08-21 06:05:38,830 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 1780 pixels with at least one CR and at least four groups 2021-08-21 06:05:38,830 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 954 pixels with at least one CR and three groups 2021-08-21 06:05:38,831 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier Two-point found 24172 pixels with at least one CR and two groups 2021-08-21 06:05:39,423 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.14275 sec 2021-08-21 06:05:39,425 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 3.920990 2021-08-21 06:05:39,720 - stpipe.Detector1Pipeline.jump - INFO - Saved model in jw0010010_11010_nrs1_chimera_jump.fits 2021-08-21 06:05:39,720 - stpipe.Detector1Pipeline.jump - INFO - Step jump done 2021-08-21 06:05:39,874 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_jump.fits>,). 2021-08-21 06:05:39,875 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} 2021-08-21 06:05:40,073 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits 2021-08-21 06:05:40,121 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits 2021-08-21 06:05:40,144 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols 2021-08-21 06:05:40,144 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal 2021-08-21 06:06:14,034 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 7 2021-08-21 06:06:14,034 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1 2021-08-21 06:06:14,409 - stpipe.Detector1Pipeline.ramp_fit - INFO - Saved model in jw0010010_11010_nrs1_chimera_0_ramp_fit.fits 2021-08-21 06:06:14,559 - stpipe.Detector1Pipeline.ramp_fit - INFO - Saved model in jw0010010_11010_nrs1_chimera_1_ramp_fit.fits 2021-08-21 06:06:14,559 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done 2021-08-21 06:06:14,755 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw0010010_11010_nrs1_chimera_0_ramp_fit.fits>,). 2021-08-21 06:06:14,756 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:06:14,812 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2021-08-21 06:06:14,955 - stpipe.Detector1Pipeline.gain_scale - INFO - Saved model in jw0010010_11010_nrs1_chimera_gain_scale.fits 2021-08-21 06:06:14,955 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:06:15,059 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw0010010_11010_nrs1_chimera_1_ramp_fit.fits>,). 2021-08-21 06:06:15,060 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} 2021-08-21 06:06:15,117 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.0 2021-08-21 06:06:15,263 - stpipe.Detector1Pipeline.gain_scale - INFO - Saved model in jw0010010_11010_nrs1_chimera_gain_scaleints.fits 2021-08-21 06:06:15,263 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:06:15,399 - stpipe.Detector1Pipeline - INFO - Saved model in jw0010010_11010_nrs1_chimera_rateints.fits 2021-08-21 06:06:15,399 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1 2021-08-21 06:06:15,532 - stpipe.Detector1Pipeline - INFO - Saved model in jw0010010_11010_nrs1_chimera_rate.fits 2021-08-21 06:06:15,532 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/irs2/jw0010010_11010_nrs1_chimera_uncal.fits HTTP/1.1" 200 439151040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/irs2/jw0010010_11010_nrs1_chimera_uncal.fits HTTP/1.1" 200 439151040 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/irs2/jw0010010_11010_nrs1_chimera_uncal.fits HTTP/1.1" 200 439151040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/irs2/jw0010010_11010_nrs1_chimera_uncal.fits HTTP/1.1" 200 439151040 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. 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DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe.Detector1Pipeline:step.py:321 Detector1Pipeline instance created. INFO stpipe.Detector1Pipeline.group_scale:step.py:321 GroupScaleStep instance created. INFO stpipe.Detector1Pipeline.dq_init:step.py:321 DQInitStep instance created. INFO stpipe.Detector1Pipeline.saturation:step.py:321 SaturationStep instance created. INFO stpipe.Detector1Pipeline.ipc:step.py:321 IPCStep instance created. INFO stpipe.Detector1Pipeline.superbias:step.py:321 SuperBiasStep instance created. INFO stpipe.Detector1Pipeline.refpix:step.py:321 RefPixStep instance created. INFO stpipe.Detector1Pipeline.rscd:step.py:321 RscdStep instance created. INFO stpipe.Detector1Pipeline.firstframe:step.py:321 FirstFrameStep instance created. INFO stpipe.Detector1Pipeline.lastframe:step.py:321 LastFrameStep instance created. INFO stpipe.Detector1Pipeline.linearity:step.py:321 LinearityStep instance created. INFO stpipe.Detector1Pipeline.dark_current:step.py:321 DarkCurrentStep instance created. INFO stpipe.Detector1Pipeline.reset:step.py:321 ResetStep instance created. INFO stpipe.Detector1Pipeline.persistence:step.py:321 PersistenceStep instance created. INFO stpipe.Detector1Pipeline.jump:step.py:321 JumpStep instance created. INFO stpipe.Detector1Pipeline.ramp_fit:step.py:321 RampFitStep instance created. INFO stpipe.Detector1Pipeline.gain_scale:step.py:321 GainScaleStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Detector1Pipeline:step.py:367 Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits',). INFO stpipe.Detector1Pipeline:step.py:371 Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'}}} DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0/jw0010010_11010_nrs1_chimera_uncal.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw0010010_11010_nrs1_chimera_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for PERSAT reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for REFPIX reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RESET reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RSCD reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPDENSITY reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPPARS reference file is 'N/A'. INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure INFO stpipe.Detector1Pipeline.group_scale:step.py:367 Step group_scale running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). INFO stpipe.Detector1Pipeline.group_scale:step.py:371 Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:49 NFRAMES and FRMDIVSR are equal; correction not needed INFO stpipe.Detector1Pipeline.group_scale:group_scale_step.py:50 Step will be skipped INFO stpipe.Detector1Pipeline.group_scale:step.py:470 Step group_scale done INFO stpipe.Detector1Pipeline.dq_init:step.py:367 Step dq_init running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_uncal.fits>,). INFO stpipe.Detector1Pipeline.dq_init:step.py:371 Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dq_init:dq_init_step.py:63 Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0010.fits DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.dq_init:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_dq_init.fits INFO stpipe.Detector1Pipeline.dq_init:step.py:470 Step dq_init done INFO stpipe.Detector1Pipeline.saturation:step.py:367 Step saturation running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dq_init.fits>,). INFO stpipe.Detector1Pipeline.saturation:step.py:371 Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.saturation:saturation_step.py:25 Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0027.fits DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 47202 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 47202 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_saturation.fits INFO stpipe.Detector1Pipeline.saturation:step.py:470 Step saturation done INFO stpipe.Detector1Pipeline.ipc:step.py:367 Step ipc running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). INFO stpipe.Detector1Pipeline.ipc:step.py:371 Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} INFO stpipe.Detector1Pipeline.ipc:step.py:401 Step skipped. INFO stpipe.Detector1Pipeline.ipc:step.py:470 Step ipc done INFO stpipe.Detector1Pipeline.superbias:step.py:367 Step superbias running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_saturation.fits>,). INFO stpipe.Detector1Pipeline.superbias:step.py:371 Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:superbias_step.py:27 Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0117.fits DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_superbias.fits INFO stpipe.Detector1Pipeline.superbias:step.py:470 Step superbias done INFO stpipe.Detector1Pipeline.refpix:step.py:367 Step refpix running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_superbias.fits>,). INFO stpipe.Detector1Pipeline.refpix:step.py:371 Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:36 Using refpix reference file: /grp/crds/cache/references/jwst/jwst_nirspec_refpix_0019.fits DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 1 mask 1048608 DQ bits [5, 20] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 748 749 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1048 1049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 1 odd_even 2 mask 0 DQ bits [] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 1 mask 8464 DQ bits [18, 23, 27] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1650 1651 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1750 1751 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1830 1831 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 2 odd_even 2 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 1848 1849 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 1 mask 16448 DQ bits [6, 14] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2048 2049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2208 2209 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 3 odd_even 2 mask 33554944 DQ bits [9, 25] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2110 2111 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2430 2431 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 1 mask 8 DQ bits [28] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3130 3131 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:345 output 4 odd_even 2 mask 32897 DQ bits [16, 24, 31] DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 2888 2889 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3048 3049 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3188 3189 DEBUG stpipe.Detector1Pipeline.refpix:irs2_subtract_reference.py:350 bad interleaved reference at pixels 3188 3189 INFO stpipe.Detector1Pipeline.refpix:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_refpix.fits INFO stpipe.Detector1Pipeline.refpix:step.py:470 Step refpix done INFO stpipe.Detector1Pipeline.linearity:step.py:367 Step linearity running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_refpix.fits>,). INFO stpipe.Detector1Pipeline.linearity:step.py:371 Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.linearity:linearity_step.py:23 Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0022.fits DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored WARNING stpipe.Detector1Pipeline.linearity:dynamicdq.py:42 Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.linearity:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_linearity.fits INFO stpipe.Detector1Pipeline.linearity:step.py:470 Step linearity done INFO stpipe.Detector1Pipeline.dark_current:step.py:367 Step dark_current running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_linearity.fits>,). INFO stpipe.Detector1Pipeline.dark_current:step.py:371 Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'dark_output': None} DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:dark_current_step.py:28 Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0088.fits DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=7, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=7, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=65, nframes=1, groupgap=0 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=7, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=7, size=2048,2048 DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_dark_current.fits INFO stpipe.Detector1Pipeline.dark_current:step.py:470 Step dark_current done INFO stpipe.Detector1Pipeline.jump:step.py:367 Step jump running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_dark_current.fits>,). INFO stpipe.Detector1Pipeline.jump:step.py:371 Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'rejection_threshold': 200.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.jump:jump_step.py:51 CR rejection threshold = 200 sigma DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.jump:jump_step.py:57 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.jump:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.jump:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.jump:jump_step.py:63 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.jump:jump.py:37 Using 1 core for jump detection INFO stpipe.Detector1Pipeline.jump:jump.py:37 Using 1 core for jump detection DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.jump:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 INFO stpipe.Detector1Pipeline.jump:jump.py:90 Executing two-point difference method INFO stpipe.Detector1Pipeline.jump:jump.py:90 Executing two-point difference method INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:61 Working on integration 1: INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:61 Working on integration 1: DEBUG stpipe.Detector1Pipeline.jump:twopoint_difference.py:99 Twopt found 36783 pixels with sigma=0 DEBUG stpipe.Detector1Pipeline.jump:twopoint_difference.py:99 Twopt found 36783 pixels with sigma=0 DEBUG stpipe.Detector1Pipeline.jump:twopoint_difference.py:100 which will be reset so that no jump will be detected DEBUG stpipe.Detector1Pipeline.jump:twopoint_difference.py:100 which will be reset so that no jump will be detected INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:132 From highest outlier Two-point found 1780 pixels with at least one CR and at least four groups INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:132 From highest outlier Two-point found 1780 pixels with at least one CR and at least four groups INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:134 From highest outlier Two-point found 954 pixels with at least one CR and three groups INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:134 From highest outlier Two-point found 954 pixels with at least one CR and three groups INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:136 From highest outlier Two-point found 24172 pixels with at least one CR and two groups INFO stpipe.Detector1Pipeline.jump:twopoint_difference.py:136 From highest outlier Two-point found 24172 pixels with at least one CR and two groups INFO stpipe.Detector1Pipeline.jump:jump.py:155 Total elapsed time = 3.14275 sec INFO stpipe.Detector1Pipeline.jump:jump.py:155 Total elapsed time = 3.14275 sec INFO stpipe.Detector1Pipeline.jump:jump_step.py:75 The execution time in seconds: 3.920990 INFO stpipe.Detector1Pipeline.jump:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_jump.fits INFO stpipe.Detector1Pipeline.jump:step.py:470 Step jump done INFO stpipe.Detector1Pipeline.ramp_fit:step.py:367 Step ramp_fit running with args (<RampModel(1, 7, 3200, 2048) from jw0010010_11010_nrs1_chimera_jump.fits>,). INFO stpipe.Detector1Pipeline.ramp_fit:step.py:371 Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0018.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0023.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=6 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=6 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 45984: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 45984: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -234049929216.000000, -55713.359375, 90292648.000000, 114282184.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -234049929216.000000, -55713.359375, 90292648.000000, 114282184.000000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 4194304 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (7, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (7, 2048, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 2048 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 7 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 7 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 33.780988 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 33.780988 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_0_ramp_fit.fits INFO stpipe.Detector1Pipeline.ramp_fit:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_1_ramp_fit.fits INFO stpipe.Detector1Pipeline.ramp_fit:step.py:470 Step ramp_fit done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<ImageModel(2048, 2048) from jw0010010_11010_nrs1_chimera_0_ramp_fit.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_gain_scale.fits INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw0010010_11010_nrs1_chimera_1_ramp_fit.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_irs2_detector1_rtdata_module0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.0 INFO stpipe.Detector1Pipeline.gain_scale:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_gain_scaleints.fits INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_rateints.fits INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:step.py:928 Saved model in jw0010010_11010_nrs1_chimera_rate.fits INFO stpipe.Detector1Pipeline:step.py:470 Step Detector1Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dq_init.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dq_init.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dq_init.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dq_init.fits HTTP/1.1" 200 439156800 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[saturation] | 7.86 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_saturation.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_saturation.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_saturation.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_saturation.fits HTTP/1.1" 200 439156800 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[superbias] | 7.84 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_superbias.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_superbias.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_superbias.fits HTTP/1.1" 200 439156800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_superbias.fits HTTP/1.1" 200 439156800 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[refpix] | 4.22 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_refpix.fits HTTP/1.1" 200 281082240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_refpix.fits HTTP/1.1" 200 281082240 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_refpix.fits HTTP/1.1" 200 281082240 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_refpix.fits HTTP/1.1" 200 281082240 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[linearity] | 4.96 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_linearity.fits HTTP/1.1" 200 427884480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_linearity.fits HTTP/1.1" 200 427884480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_linearity.fits HTTP/1.1" 200 427884480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_linearity.fits HTTP/1.1" 200 427884480 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[dark_current] | 7.37 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dark_current.fits HTTP/1.1" 200 427884480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dark_current.fits HTTP/1.1" 200 427884480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dark_current.fits HTTP/1.1" 200 427884480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_dark_current.fits HTTP/1.1" 200 427884480 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[jump] | 5.72 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_jump.fits HTTP/1.1" 200 398522880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_jump.fits HTTP/1.1" 200 398522880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_jump.fits HTTP/1.1" 200 398522880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_jump.fits HTTP/1.1" 200 398522880 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[0_ramp_fit] | 1.67 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_0_ramp_fit.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_0_ramp_fit.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_0_ramp_fit.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_0_ramp_fit.fits HTTP/1.1" 200 83940480 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[gain_scale] | 1.62 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_gain_scale.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_gain_scale.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_gain_scale.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_gain_scale.fits HTTP/1.1" 200 83940480 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_irs2_detector1.py::test_nirspec_irs2_detector1[rate] | 1.41 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_rate.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_irs2_detector1/jw0010010_11010_nrs1_chimera_rate.fits HTTP/1.1" 200 83940480 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_lamp_fs_spec2.py::test_nirspec_lamp_fs_spec2[assign_wcs] | 17.16 | |
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-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:07:07,630 - stpipe - INFO - PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0005.asdf 2021-08-21 06:07:07,671 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:07:07,672 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:07:07,674 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:07:07,674 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:07:07,675 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:07:07,676 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:07:07,678 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:07:07,679 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:07:07,680 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:07:07,681 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:07:07,681 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:07:07,682 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:07:07,683 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:07:07,685 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:07:07,686 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:07:07,687 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:07:07,688 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:07:07,688 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:07:07,689 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:07:07,690 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:07:07,691 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:07:07,692 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:07:07,692 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:07:07,692 - stpipe - INFO - OS: Linux 2021-08-21 06:07:08,012 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits',). 2021-08-21 06:07:08,025 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:07:08,186 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'jw84600010001_02101_00004_nrs2_rate.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'regions', 'sflat', 'specwcs', 'wavelengthrange'] 2021-08-21 06:07:08,196 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:07:08,197 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:07:08,199 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. 2021-08-21 06:07:08,200 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf'. 2021-08-21 06:07:08,202 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:07:08,202 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'. 2021-08-21 06:07:08,202 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:07:08,202 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:07:08,202 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'. 2021-08-21 06:07:08,202 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:07:08,204 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:07:08,204 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:07:08,204 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:07:08,204 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:07:08,206 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:07:08,207 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:07:08,207 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'. 2021-08-21 06:07:08,207 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:07:08,207 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:07:08,209 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:07:08,209 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 2021-08-21 06:07:08,209 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits ... 2021-08-21 06:07:08,623 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_rate.fits>,). 2021-08-21 06:07:08,624 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:07:08,791 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581909999999 deg 2021-08-21 06:07:08,791 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.331661224 deg 2021-08-21 06:07:08,792 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496104076275666 deg 2021-08-21 06:07:08,792 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:07:08,941 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S200A1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2021-08-21 06:07:08,953 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S200A2 from the list of open slits because the WCS bounding_box is completely outside the detector. 2021-08-21 06:07:08,965 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S400A1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2021-08-21 06:07:08,977 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit S1600A1 from the list of open slits because the WCS bounding_box is completely outside the detector. 2021-08-21 06:07:08,988 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS2: ['S200B1'] 2021-08-21 06:07:08,989 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 1 open slitlets 2021-08-21 06:07:09,017 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581909999999 deg 2021-08-21 06:07:09,017 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.331661224 deg 2021-08-21 06:07:09,017 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496104076275666 deg 2021-08-21 06:07:09,018 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:07:09,027 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1e-06, 1.8e-06] 2021-08-21 06:07:09,146 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2021-08-21 06:07:09,146 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:07:09,146 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 3 2021-08-21 06:07:09,146 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 4 2021-08-21 06:07:09,146 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 5 2021-08-21 06:07:09,184 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 06:07:09,304 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:07:09,516 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in jw84600010001_02101_00004_nrs2_assign_wcs.fits 2021-08-21 06:07:09,516 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:07:09,656 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). 2021-08-21 06:07:09,657 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:07:09,657 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:07:09,658 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:07:09,829 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). 2021-08-21 06:07:09,830 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} 2021-08-21 06:07:09,830 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:07:09,831 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:07:09,951 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). 2021-08-21 06:07:09,952 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} 2021-08-21 06:07:09,952 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step skipped. 2021-08-21 06:07:09,953 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:07:10,065 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). 2021-08-21 06:07:10,066 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:07:10,084 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_AUTOWAVE 2021-08-21 06:07:10,159 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: S200B1 2021-08-21 06:07:10,159 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 39 1325 2021-08-21 06:07:10,159 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 917 964 2021-08-21 06:07:10,333 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:07:10,514 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in jw84600010001_02101_00004_nrs2_extract_2d.fits 2021-08-21 06:07:10,514 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:07:10,637 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2021-08-21 06:07:10,638 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} 2021-08-21 06:07:10,638 - stpipe.Spec2Pipeline.srctype - INFO - Step skipped. 2021-08-21 06:07:10,639 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:07:10,748 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2021-08-21 06:07:10,751 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:07:10,751 - stpipe.Spec2Pipeline.master_background - INFO - Step skipped. 2021-08-21 06:07:10,752 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:07:10,864 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2021-08-21 06:07:10,865 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} 2021-08-21 06:07:10,865 - stpipe.Spec2Pipeline.wavecorr - INFO - Step skipped. 2021-08-21 06:07:10,866 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:07:10,985 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). 2021-08-21 06:07:10,986 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:07:11,689 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit S200B1 2021-08-21 06:07:19,749 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in jw84600010001_02101_00004_nrs2_flat_field.fits 2021-08-21 06:07:19,749 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:07:19,962 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). 2021-08-21 06:07:19,963 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:07:19,963 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped. 2021-08-21 06:07:19,964 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:07:20,077 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). 2021-08-21 06:07:20,077 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:07:20,077 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped. 2021-08-21 06:07:20,078 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:07:20,181 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). 2021-08-21 06:07:20,182 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:07:20,182 - stpipe.Spec2Pipeline.photom - INFO - Step skipped. 2021-08-21 06:07:20,183 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:07:20,294 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_cal.fits>,). 2021-08-21 06:07:20,295 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:07:20,295 - stpipe.Spec2Pipeline.resample_spec - INFO - Step skipped. 2021-08-21 06:07:20,296 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:07:20,395 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_cal.fits>,). 2021-08-21 06:07:20,396 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:07:20,396 - stpipe.Spec2Pipeline.extract_1d - INFO - Step skipped. 2021-08-21 06:07:20,397 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:07:20,397 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 2021-08-21 06:07:20,397 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:07:20,554 - stpipe.Spec2Pipeline - INFO - Saved model in jw84600010001_02101_00004_nrs2_cal.fits 2021-08-21 06:07:20,554 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw84600010001_02101_00004_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw84600010001_02101_00004_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw84600010001_02101_00004_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/lamp/jw84600010001_02101_00004_nrs2_rate.fits HTTP/1.1" 200 83943360 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS INFO stpipe:pipeline.py:179 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0005.asdf INFO stpipe:pipeline.py:179 PARS-SPEC2PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-spec2pipeline_0005.asdf INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw84600010001_02101_00004_nrs2_rate.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'regions', 'sflat', 'specwcs', 'wavelengthrange'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:367 Science data does not allow master background correction. Skipping "master_background". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_rate.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S200A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S200A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S200A2 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S200A2 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S400A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S400A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S1600A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1700 Removing slit S1600A1 from the list of open slits because the WCS bounding_box is completely outside the detector. INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS2: ['S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS2: ['S200B1'] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 1 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 1 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0.1260581909999999 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.331661224 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: 0.0002496104076275666 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1e-06, 1.8e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1e-06, 1.8e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_autowave pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in jw84600010001_02101_00004_nrs2_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.msa_flagging:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(2048, 2048) from jw84600010001_02101_00004_nrs2_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_AUTOWAVE INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_AUTOWAVE DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: S200B1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 39 1325 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 39 1325 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 917 964 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 917 964 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.55 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:step.py:928 Saved model in jw84600010001_02101_00004_nrs2_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.srctype:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} INFO stpipe.Spec2Pipeline.master_background:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.wavecorr:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_AUTOWAVE DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FFLAT DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type SFLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200B1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit S200B1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16116 out of 60442 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16116 out of 60442 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 10 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 10 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in jw84600010001_02101_00004_nrs2_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.pathloss:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.barshadow:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_flat_field.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'inverse': False, 'source_type': None} INFO stpipe.Spec2Pipeline.photom:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} INFO stpipe.Spec2Pipeline.resample_spec:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from jw84600010001_02101_00004_nrs2_cal.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} INFO stpipe.Spec2Pipeline.extract_1d:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_lamp_fs_spec2_rtdata_module0/jw84600010001_02101_00004_nrs2 INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in jw84600010001_02101_00004_nrs2_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_assign_wcs.fits HTTP/1.1" 200 83992320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_assign_wcs.fits HTTP/1.1" 200 83992320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_assign_wcs.fits HTTP/1.1" 200 83992320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_lamp_spec2/jw84600010001_02101_00004_nrs2_assign_wcs.fits HTTP/1.1" 200 83992320 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_rerun | 87.99 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:13:30,821 - stpipe.MasterBackgroundNrsSlitsStep - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:13:30,822 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:13:30,823 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:13:30,823 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:13:30,824 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PhotomStep instance created. 2021-08-21 06:13:30,980 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:13:30,983 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2021-08-21 06:13:30,991 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Calculating master background 2021-08-21 06:13:31,149 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:13:31,150 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:13:48,214 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 6 2021-08-21 06:13:49,275 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 3 2021-08-21 06:13:52,359 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 4 2021-08-21 06:13:55,230 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 5 2021-08-21 06:13:59,849 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 8 2021-08-21 06:14:02,215 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 10 2021-08-21 06:14:05,071 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 14 2021-08-21 06:14:08,762 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 16 2021-08-21 06:14:13,167 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field done 2021-08-21 06:14:13,674 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:13,675 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:14:13,710 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:14:13,752 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:14:15,445 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 0 2021-08-21 06:14:15,460 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 1 2021-08-21 06:14:15,476 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 2 2021-08-21 06:14:15,491 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 3 2021-08-21 06:14:15,508 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 4 2021-08-21 06:14:15,523 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 5 2021-08-21 06:14:15,541 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 6 2021-08-21 06:14:15,557 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 7 2021-08-21 06:14:15,574 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss done 2021-08-21 06:14:16,083 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:16,084 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:14:16,118 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:14:18,018 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 6 2021-08-21 06:14:18,077 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 3 2021-08-21 06:14:18,193 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 4 2021-08-21 06:14:18,302 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 5 2021-08-21 06:14:18,488 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 8 2021-08-21 06:14:18,582 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 10 2021-08-21 06:14:18,690 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 14 2021-08-21 06:14:18,828 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 16 2021-08-21 06:14:18,971 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow done 2021-08-21 06:14:19,351 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:19,352 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:14:19,410 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:14:19,411 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:14:20,923 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:14:20,923 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - detector: NRS1 2021-08-21 06:14:20,923 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:14:20,923 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - filter: F170LP 2021-08-21 06:14:20,924 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - grating: G235M 2021-08-21 06:14:21,051 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 6 2021-08-21 06:14:21,051 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,056 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 3 2021-08-21 06:14:21,057 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,062 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 4 2021-08-21 06:14:21,062 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,067 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 5 2021-08-21 06:14:21,068 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,073 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 8 2021-08-21 06:14:21,074 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,079 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 10 2021-08-21 06:14:21,079 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,084 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 14 2021-08-21 06:14:21,084 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,090 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 16 2021-08-21 06:14:21,090 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:21,098 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom done 2021-08-21 06:14:21,098 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Creating MOS master background from background slitlets 2021-08-21 06:14:21,114 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_6 2021-08-21 06:14:21,114 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_5 2021-08-21 06:14:21,114 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_10 2021-08-21 06:14:21,114 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_16 2021-08-21 06:14:21,259 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Applying resampling and 1D extraction to background slits 2021-08-21 06:14:21,276 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2021-08-21 06:14:21,619 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:21,621 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:14:21,652 - stpipe.ResampleSpecStep - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:14:21,653 - stpipe.ResampleSpecStep - INFO - setting: pixfrac=1.0 2021-08-21 06:14:21,653 - stpipe.ResampleSpecStep - INFO - setting: kernel='square' 2021-08-21 06:14:21,653 - stpipe.ResampleSpecStep - INFO - setting: fillval='INDEF' 2021-08-21 06:14:21,653 - stpipe.ResampleSpecStep - INFO - setting: weight_type='ivm' 2021-08-21 06:14:21,653 - stpipe.ResampleSpecStep - INFO - setting: pscale_ratio=1.0 2021-08-21 06:14:21,653 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits 2021-08-21 06:14:22,230 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:22,256 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:22,258 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:22,281 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:22,284 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:22,309 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:22,312 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:22,334 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:22,346 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 2021-08-21 06:14:22,588 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:22,639 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:22,650 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:22,700 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:22,712 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:22,763 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:22,776 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:22,830 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:22,857 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 2021-08-21 06:14:23,018 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:23,056 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:23,063 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:23,096 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:23,105 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:23,140 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:23,147 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:23,179 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:23,198 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 2021-08-21 06:14:23,371 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:23,411 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:23,419 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:23,458 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:23,468 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:23,506 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:23,515 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:23,558 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:23,579 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 2021-08-21 06:14:23,590 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2021-08-21 06:14:23,612 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2021-08-21 06:14:23,940 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:23,942 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:14:23,967 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:14:23,986 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:14:24,081 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:14:24,081 - stpipe.Extract1dStep - INFO - Working on slit 6 2021-08-21 06:14:24,082 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:24,082 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:24,086 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:24,086 - stpipe.Extract1dStep - INFO - xstart=0, xstop=274, ystart=0, ystop=14 2021-08-21 06:14:24,162 - stpipe.Extract1dStep - INFO - Working on slit 5 2021-08-21 06:14:24,162 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:24,162 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:24,171 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:24,171 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1278, ystart=0, ystop=14 2021-08-21 06:14:24,389 - stpipe.Extract1dStep - INFO - Working on slit 10 2021-08-21 06:14:24,390 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:24,390 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:24,396 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:24,396 - stpipe.Extract1dStep - INFO - xstart=0, xstop=781, ystart=0, ystop=14 2021-08-21 06:14:24,540 - stpipe.Extract1dStep - INFO - Working on slit 16 2021-08-21 06:14:24,540 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:24,540 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:24,547 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:24,547 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1011, ystart=0, ystop=13 2021-08-21 06:14:24,728 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2021-08-21 06:14:24,728 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Combining 1D background spectra into master background 2021-08-21 06:14:24,728 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using exposure time as the weight. 2021-08-21 06:14:24,811 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 1 2021-08-21 06:14:24,813 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 2 2021-08-21 06:14:24,820 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 3 2021-08-21 06:14:24,825 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 4 2021-08-21 06:14:24,830 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - 2 output pixel numbers were NaN 2021-08-21 06:14:24,830 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - 1 elements of output had no corresponding input data; 2021-08-21 06:14:24,830 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - these elements will be omitted. 2021-08-21 06:14:24,876 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Interpolating 1D master background to all MOS 2D slitlets 2021-08-21 06:14:26,378 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 6 2021-08-21 06:14:26,378 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 3 2021-08-21 06:14:26,379 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 4 2021-08-21 06:14:26,380 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 5 2021-08-21 06:14:26,380 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 8 2021-08-21 06:14:26,381 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 10 2021-08-21 06:14:26,381 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 14 2021-08-21 06:14:26,382 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 16 2021-08-21 06:14:26,696 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:26,697 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:14:26,705 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:14:26,705 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:14:26,705 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:14:27,897 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:14:27,898 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - detector: NRS1 2021-08-21 06:14:27,898 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:14:27,898 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - filter: F170LP 2021-08-21 06:14:27,898 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - grating: G235M 2021-08-21 06:14:27,963 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 6 2021-08-21 06:14:27,963 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:27,969 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 3 2021-08-21 06:14:27,969 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:27,974 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 4 2021-08-21 06:14:27,975 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:27,982 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 5 2021-08-21 06:14:27,982 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:27,988 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 8 2021-08-21 06:14:27,989 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:27,994 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 10 2021-08-21 06:14:27,994 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:27,999 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 14 2021-08-21 06:14:28,000 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:28,005 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 16 2021-08-21 06:14:28,005 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:28,012 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom done 2021-08-21 06:14:28,401 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:28,403 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:14:29,588 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 6 2021-08-21 06:14:29,592 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 3 2021-08-21 06:14:29,596 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 4 2021-08-21 06:14:29,599 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 5 2021-08-21 06:14:29,603 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 8 2021-08-21 06:14:29,607 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 10 2021-08-21 06:14:29,610 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 14 2021-08-21 06:14:29,614 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 16 2021-08-21 06:14:29,619 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow done 2021-08-21 06:14:29,995 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:29,996 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:14:30,003 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:14:31,188 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 0 2021-08-21 06:14:31,192 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 1 2021-08-21 06:14:31,196 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 2 2021-08-21 06:14:31,201 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 3 2021-08-21 06:14:31,205 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 4 2021-08-21 06:14:31,209 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 5 2021-08-21 06:14:31,214 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 6 2021-08-21 06:14:31,218 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 7 2021-08-21 06:14:31,223 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss done 2021-08-21 06:14:31,675 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:31,678 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:14:31,685 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2021-08-21 06:14:32,869 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 6 2021-08-21 06:14:32,873 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 3 2021-08-21 06:14:32,877 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 4 2021-08-21 06:14:32,880 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 5 2021-08-21 06:14:32,884 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 8 2021-08-21 06:14:32,887 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 10 2021-08-21 06:14:32,891 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 14 2021-08-21 06:14:32,894 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 16 2021-08-21 06:14:32,900 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field done 2021-08-21 06:14:32,905 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:14:34,578 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep done 2021-08-21 06:14:34,986 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:34,990 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundnrsslitsstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2021-08-21 06:14:34,997 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Calculating master background 2021-08-21 06:14:35,387 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:35,388 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:14:35,396 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2021-08-21 06:14:36,530 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 6 2021-08-21 06:14:36,534 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 3 2021-08-21 06:14:36,537 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 4 2021-08-21 06:14:36,540 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 5 2021-08-21 06:14:36,544 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 8 2021-08-21 06:14:36,547 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 10 2021-08-21 06:14:36,550 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 14 2021-08-21 06:14:36,554 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 16 2021-08-21 06:14:36,559 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field done 2021-08-21 06:14:37,017 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:37,018 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:14:37,025 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:14:38,222 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 0 2021-08-21 06:14:38,227 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 1 2021-08-21 06:14:38,231 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 2 2021-08-21 06:14:38,235 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 3 2021-08-21 06:14:38,240 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 4 2021-08-21 06:14:38,244 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 5 2021-08-21 06:14:38,248 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 6 2021-08-21 06:14:38,253 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 7 2021-08-21 06:14:38,258 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss done 2021-08-21 06:14:38,786 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:38,788 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:14:39,982 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 6 2021-08-21 06:14:39,986 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 3 2021-08-21 06:14:39,990 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 4 2021-08-21 06:14:39,999 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 5 2021-08-21 06:14:40,006 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 8 2021-08-21 06:14:40,011 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 10 2021-08-21 06:14:40,015 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 14 2021-08-21 06:14:40,018 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 16 2021-08-21 06:14:40,030 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow done 2021-08-21 06:14:40,584 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:40,586 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:14:40,593 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:14:40,593 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:14:40,593 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:14:41,780 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:14:41,781 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - detector: NRS1 2021-08-21 06:14:41,781 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:14:41,781 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - filter: F170LP 2021-08-21 06:14:41,781 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - grating: G235M 2021-08-21 06:14:41,846 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 6 2021-08-21 06:14:41,846 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,851 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 3 2021-08-21 06:14:41,851 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,858 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 4 2021-08-21 06:14:41,858 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,863 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 5 2021-08-21 06:14:41,863 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,869 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 8 2021-08-21 06:14:41,869 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,874 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 10 2021-08-21 06:14:41,875 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,880 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 14 2021-08-21 06:14:41,880 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,885 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 16 2021-08-21 06:14:41,886 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:41,892 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom done 2021-08-21 06:14:41,892 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Creating MOS master background from background slitlets 2021-08-21 06:14:41,908 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_6 2021-08-21 06:14:41,908 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_5 2021-08-21 06:14:41,908 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_10 2021-08-21 06:14:41,908 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_16 2021-08-21 06:14:42,053 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Applying resampling and 1D extraction to background slits 2021-08-21 06:14:42,070 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2021-08-21 06:14:42,649 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:42,652 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:14:42,683 - stpipe.ResampleSpecStep - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:14:42,684 - stpipe.ResampleSpecStep - INFO - setting: pixfrac=1.0 2021-08-21 06:14:42,684 - stpipe.ResampleSpecStep - INFO - setting: kernel='square' 2021-08-21 06:14:42,684 - stpipe.ResampleSpecStep - INFO - setting: fillval='INDEF' 2021-08-21 06:14:42,684 - stpipe.ResampleSpecStep - INFO - setting: weight_type='ivm' 2021-08-21 06:14:42,684 - stpipe.ResampleSpecStep - INFO - setting: pscale_ratio=1.0 2021-08-21 06:14:42,684 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits 2021-08-21 06:14:43,239 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:43,264 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:43,266 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:43,290 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:43,293 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:43,315 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:43,318 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:43,343 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:14:43,355 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 2021-08-21 06:14:43,560 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:43,611 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:43,622 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:43,670 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:43,682 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:43,733 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:43,745 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:43,794 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:14:43,821 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 2021-08-21 06:14:43,977 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:44,013 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:44,020 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:44,053 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:44,061 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:44,093 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:44,100 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:44,133 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:14:44,151 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 2021-08-21 06:14:44,323 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:14:44,362 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:44,371 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:14:44,409 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:44,418 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:14:44,455 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:44,464 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:14:44,501 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:14:44,524 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 2021-08-21 06:14:44,534 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2021-08-21 06:14:44,550 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2021-08-21 06:14:44,969 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:44,971 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:14:44,995 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:14:45,012 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:14:45,050 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:14:45,050 - stpipe.Extract1dStep - INFO - Working on slit 6 2021-08-21 06:14:45,050 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:45,050 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:45,054 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:45,055 - stpipe.Extract1dStep - INFO - xstart=0, xstop=274, ystart=0, ystop=14 2021-08-21 06:14:45,126 - stpipe.Extract1dStep - INFO - Working on slit 5 2021-08-21 06:14:45,126 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:45,127 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:45,135 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:45,135 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1278, ystart=0, ystop=14 2021-08-21 06:14:45,351 - stpipe.Extract1dStep - INFO - Working on slit 10 2021-08-21 06:14:45,352 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:45,352 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:45,358 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:45,358 - stpipe.Extract1dStep - INFO - xstart=0, xstop=781, ystart=0, ystop=14 2021-08-21 06:14:45,504 - stpipe.Extract1dStep - INFO - Working on slit 16 2021-08-21 06:14:45,504 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:14:45,504 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:14:45,512 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:14:45,512 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1011, ystart=0, ystop=13 2021-08-21 06:14:45,692 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2021-08-21 06:14:45,692 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Combining 1D background spectra into master background 2021-08-21 06:14:45,692 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using exposure time as the weight. 2021-08-21 06:14:45,772 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 1 2021-08-21 06:14:45,774 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 2 2021-08-21 06:14:45,781 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 3 2021-08-21 06:14:45,786 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 4 2021-08-21 06:14:45,791 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - 2 output pixel numbers were NaN 2021-08-21 06:14:45,791 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - 1 elements of output had no corresponding input data; 2021-08-21 06:14:45,791 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - these elements will be omitted. 2021-08-21 06:14:45,835 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Interpolating 1D master background to all MOS 2D slitlets 2021-08-21 06:14:47,068 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 6 2021-08-21 06:14:47,068 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 3 2021-08-21 06:14:47,069 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 4 2021-08-21 06:14:47,070 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 5 2021-08-21 06:14:47,071 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 8 2021-08-21 06:14:47,071 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 10 2021-08-21 06:14:47,072 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 14 2021-08-21 06:14:47,072 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 16 2021-08-21 06:14:47,543 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:47,544 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:14:47,551 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:14:47,551 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:14:47,551 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:14:48,751 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:14:48,751 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - detector: NRS1 2021-08-21 06:14:48,751 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:14:48,751 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - filter: F170LP 2021-08-21 06:14:48,751 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - grating: G235M 2021-08-21 06:14:48,810 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 6 2021-08-21 06:14:48,811 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,816 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 3 2021-08-21 06:14:48,816 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,821 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 4 2021-08-21 06:14:48,821 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,828 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 5 2021-08-21 06:14:48,828 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,834 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 8 2021-08-21 06:14:48,834 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,839 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 10 2021-08-21 06:14:48,839 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,844 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 14 2021-08-21 06:14:48,844 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,850 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 16 2021-08-21 06:14:48,850 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:14:48,856 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom done 2021-08-21 06:14:49,401 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:49,404 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:14:50,613 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 6 2021-08-21 06:14:50,617 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 3 2021-08-21 06:14:50,620 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 4 2021-08-21 06:14:50,624 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 5 2021-08-21 06:14:50,628 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 8 2021-08-21 06:14:50,631 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 10 2021-08-21 06:14:50,635 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 14 2021-08-21 06:14:50,638 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 16 2021-08-21 06:14:50,643 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow done 2021-08-21 06:14:51,157 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:51,158 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:14:51,165 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:14:52,359 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 0 2021-08-21 06:14:52,363 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 1 2021-08-21 06:14:52,368 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 2 2021-08-21 06:14:52,372 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 3 2021-08-21 06:14:52,377 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 4 2021-08-21 06:14:52,381 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 5 2021-08-21 06:14:52,385 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 6 2021-08-21 06:14:52,390 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 7 2021-08-21 06:14:52,395 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss done 2021-08-21 06:14:52,994 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:52,997 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:14:53,004 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2021-08-21 06:14:54,195 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 6 2021-08-21 06:14:54,199 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 3 2021-08-21 06:14:54,202 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 4 2021-08-21 06:14:54,206 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 5 2021-08-21 06:14:54,209 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 8 2021-08-21 06:14:54,213 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 10 2021-08-21 06:14:54,216 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 14 2021-08-21 06:14:54,220 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 16 2021-08-21 06:14:54,225 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field done 2021-08-21 06:14:54,230 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:14:56,089 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_masterbkg_rerun0/nrs_mos_with_bkgslits_srctype.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_masterbkg_rerun0/nrs_mos_with_bkgslits_srctype.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:321 PhotomStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:367 Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:371 Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:master_background_nrs_slits_step.py:130 Calculating master background INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:470 Step flat_field done INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:470 Step pathloss done INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:470 Step barshadow done INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:470 Step photom done DEBUG stpipe.MasterBackgroundNrsSlitsStep:master_background_nrs_slits_step.py:244 Calculating 1D master background INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:97 Creating MOS master background from background slitlets DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:774 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:795 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:321 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:367 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.ResampleSpecStep:step.py:371 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 INFO stpipe.ResampleSpecStep:step.py:470 Step ResampleSpecStep done DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:774 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:795 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:321 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:367 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.Extract1dStep:step.py:371 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 13 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 13 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [13.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [13.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=0, ystop=13 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=0, ystop=13 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:step.py:470 Step Extract1dStep done INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:529 Using exposure time as the weight. DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:243 these elements will be omitted. WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:243 these elements will be omitted. DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:470 Step photom done INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:470 Step barshadow done INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:470 Step pathloss done INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:470 Step flat_field done INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:470 Step MasterBackgroundNrsSlitsStep done INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:367 Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:371 Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundnrsslitsstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:master_background_nrs_slits_step.py:130 Calculating master background INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:470 Step flat_field done INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:470 Step pathloss done INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:470 Step barshadow done INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:470 Step photom done DEBUG stpipe.MasterBackgroundNrsSlitsStep:master_background_nrs_slits_step.py:244 Calculating 1D master background INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:97 Creating MOS master background from background slitlets DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:774 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:795 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:321 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:367 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.ResampleSpecStep:step.py:371 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 INFO stpipe.ResampleSpecStep:step.py:470 Step ResampleSpecStep done DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:774 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:795 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:321 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:367 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.Extract1dStep:step.py:371 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 13 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 13 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [13.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [13.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=0, ystop=13 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=0, ystop=13 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:step.py:470 Step Extract1dStep done INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:529 Using exposure time as the weight. DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:243 these elements will be omitted. WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:243 these elements will be omitted. DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:470 Step photom done INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:470 Step barshadow done INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:470 Step pathloss done INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:470 Step flat_field done INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:470 Step MasterBackgroundNrsSlitsStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_masterbkg_corrpars | 59.50 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:14:59,060 - stpipe.MasterBackgroundNrsSlitsStep - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:14:59,061 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:14:59,062 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:14:59,063 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:14:59,063 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PhotomStep instance created. 2021-08-21 06:14:59,239 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:59,243 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2021-08-21 06:14:59,250 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Calculating master background 2021-08-21 06:14:59,419 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:14:59,420 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:15:07,573 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 6 2021-08-21 06:15:08,721 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 3 2021-08-21 06:15:12,112 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 4 2021-08-21 06:15:15,212 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 5 2021-08-21 06:15:20,196 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 8 2021-08-21 06:15:22,710 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 10 2021-08-21 06:15:25,753 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 14 2021-08-21 06:15:29,541 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 16 2021-08-21 06:15:33,930 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field done 2021-08-21 06:15:34,298 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:34,300 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:15:34,333 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:15:34,372 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:15:35,818 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 0 2021-08-21 06:15:35,833 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 1 2021-08-21 06:15:35,850 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 2 2021-08-21 06:15:35,865 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 3 2021-08-21 06:15:35,882 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 4 2021-08-21 06:15:35,898 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 5 2021-08-21 06:15:35,914 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 6 2021-08-21 06:15:35,930 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 7 2021-08-21 06:15:35,948 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss done 2021-08-21 06:15:36,258 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:36,259 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:15:36,291 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:15:37,831 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 6 2021-08-21 06:15:37,887 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 3 2021-08-21 06:15:38,002 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 4 2021-08-21 06:15:38,114 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 5 2021-08-21 06:15:38,301 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 8 2021-08-21 06:15:38,397 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 10 2021-08-21 06:15:38,508 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 14 2021-08-21 06:15:38,647 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 16 2021-08-21 06:15:38,789 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow done 2021-08-21 06:15:39,138 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:39,140 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} 2021-08-21 06:15:39,197 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:15:39,197 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:15:40,692 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:15:40,692 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - detector: NRS1 2021-08-21 06:15:40,692 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:15:40,692 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - filter: F170LP 2021-08-21 06:15:40,692 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - grating: G235M 2021-08-21 06:15:40,753 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 6 2021-08-21 06:15:40,753 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,759 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 3 2021-08-21 06:15:40,759 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,765 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 4 2021-08-21 06:15:40,765 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,771 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 5 2021-08-21 06:15:40,771 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,778 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 8 2021-08-21 06:15:40,778 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,783 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 10 2021-08-21 06:15:40,783 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,789 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 14 2021-08-21 06:15:40,789 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,795 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 16 2021-08-21 06:15:40,795 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:40,803 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom done 2021-08-21 06:15:40,803 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Creating MOS master background from background slitlets 2021-08-21 06:15:40,819 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_6 2021-08-21 06:15:40,820 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_5 2021-08-21 06:15:40,820 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_10 2021-08-21 06:15:40,820 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using background slitlet background_16 2021-08-21 06:15:40,964 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Applying resampling and 1D extraction to background slits 2021-08-21 06:15:40,980 - stpipe.ResampleSpecStep - INFO - ResampleSpecStep instance created. 2021-08-21 06:15:41,334 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:41,336 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:15:41,367 - stpipe.ResampleSpecStep - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:15:41,368 - stpipe.ResampleSpecStep - INFO - setting: pixfrac=1.0 2021-08-21 06:15:41,368 - stpipe.ResampleSpecStep - INFO - setting: kernel='square' 2021-08-21 06:15:41,369 - stpipe.ResampleSpecStep - INFO - setting: fillval='INDEF' 2021-08-21 06:15:41,369 - stpipe.ResampleSpecStep - INFO - setting: weight_type='ivm' 2021-08-21 06:15:41,369 - stpipe.ResampleSpecStep - INFO - setting: pscale_ratio=1.0 2021-08-21 06:15:41,369 - stpipe.ResampleSpecStep - INFO - Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits 2021-08-21 06:15:41,925 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:15:41,952 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:15:41,954 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:15:41,979 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:15:41,983 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:15:42,007 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:15:42,010 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:15:42,037 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 275) --> (15, 275) 2021-08-21 06:15:42,050 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 2021-08-21 06:15:42,260 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:15:42,311 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:15:42,322 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:15:42,369 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:15:42,381 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:15:42,432 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:15:42,444 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:15:42,492 - stpipe.ResampleSpecStep - INFO - Drizzling (28, 1279) --> (15, 1279) 2021-08-21 06:15:42,518 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 2021-08-21 06:15:42,675 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:15:42,710 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:15:42,716 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:15:42,749 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:15:42,756 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:15:42,788 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:15:42,796 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:15:42,829 - stpipe.ResampleSpecStep - INFO - Drizzling (23, 782) --> (15, 782) 2021-08-21 06:15:42,848 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 2021-08-21 06:15:43,018 - stpipe.ResampleSpecStep - INFO - Resampling science data 2021-08-21 06:15:43,057 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:15:43,065 - stpipe.ResampleSpecStep - INFO - Resampling var_rnoise 2021-08-21 06:15:43,104 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:15:43,114 - stpipe.ResampleSpecStep - INFO - Resampling var_poisson 2021-08-21 06:15:43,151 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:15:43,161 - stpipe.ResampleSpecStep - INFO - Resampling var_flat 2021-08-21 06:15:43,198 - stpipe.ResampleSpecStep - INFO - Drizzling (25, 1012) --> (14, 1012) 2021-08-21 06:15:43,221 - stpipe.ResampleSpecStep - INFO - Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 2021-08-21 06:15:43,231 - stpipe.ResampleSpecStep - INFO - Step ResampleSpecStep done 2021-08-21 06:15:43,248 - stpipe.Extract1dStep - INFO - Extract1dStep instance created. 2021-08-21 06:15:43,549 - stpipe.Extract1dStep - INFO - Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:43,550 - stpipe.Extract1dStep - INFO - Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:15:43,580 - stpipe.Extract1dStep - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:15:43,597 - stpipe.Extract1dStep - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:15:43,635 - stpipe.Extract1dStep - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:15:43,635 - stpipe.Extract1dStep - INFO - Working on slit 6 2021-08-21 06:15:43,636 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:15:43,636 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:15:43,640 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:15:43,640 - stpipe.Extract1dStep - INFO - xstart=0, xstop=274, ystart=0, ystop=14 2021-08-21 06:15:43,713 - stpipe.Extract1dStep - INFO - Working on slit 5 2021-08-21 06:15:43,714 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:15:43,714 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:15:43,722 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:15:43,722 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1278, ystart=0, ystop=14 2021-08-21 06:15:43,941 - stpipe.Extract1dStep - INFO - Working on slit 10 2021-08-21 06:15:43,941 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:15:43,941 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:15:43,948 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:15:43,948 - stpipe.Extract1dStep - INFO - xstart=0, xstop=781, ystart=0, ystop=14 2021-08-21 06:15:44,097 - stpipe.Extract1dStep - INFO - Working on slit 16 2021-08-21 06:15:44,097 - stpipe.Extract1dStep - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:15:44,097 - stpipe.Extract1dStep - INFO - Target is extended, so the entire region will be extracted. 2021-08-21 06:15:44,104 - stpipe.Extract1dStep - INFO - Using extraction limits: 2021-08-21 06:15:44,104 - stpipe.Extract1dStep - INFO - xstart=0, xstop=1011, ystart=0, ystop=13 2021-08-21 06:15:44,285 - stpipe.Extract1dStep - INFO - Step Extract1dStep done 2021-08-21 06:15:44,285 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Combining 1D background spectra into master background 2021-08-21 06:15:44,285 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using exposure time as the weight. 2021-08-21 06:15:44,361 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 1 2021-08-21 06:15:44,363 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 2 2021-08-21 06:15:44,370 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 3 2021-08-21 06:15:44,375 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Accumulating data from input spectrum 4 2021-08-21 06:15:44,381 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - 2 output pixel numbers were NaN 2021-08-21 06:15:44,381 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - 1 elements of output had no corresponding input data; 2021-08-21 06:15:44,381 - stpipe.MasterBackgroundNrsSlitsStep - WARNING - these elements will be omitted. 2021-08-21 06:15:44,424 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Interpolating 1D master background to all MOS 2D slitlets 2021-08-21 06:15:45,944 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 6 2021-08-21 06:15:45,945 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 3 2021-08-21 06:15:45,945 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 4 2021-08-21 06:15:45,946 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 5 2021-08-21 06:15:45,947 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 8 2021-08-21 06:15:45,947 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 10 2021-08-21 06:15:45,948 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 14 2021-08-21 06:15:45,949 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Expanding background for slit 16 2021-08-21 06:15:46,284 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:46,285 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:15:46,292 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using previously specified correction parameters. 2021-08-21 06:15:46,292 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:15:46,292 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:15:47,454 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:15:47,454 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - detector: NRS1 2021-08-21 06:15:47,454 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:15:47,454 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - filter: F170LP 2021-08-21 06:15:47,454 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - grating: G235M 2021-08-21 06:15:47,511 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 6 2021-08-21 06:15:47,511 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,516 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 3 2021-08-21 06:15:47,517 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,522 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 4 2021-08-21 06:15:47,522 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,528 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 5 2021-08-21 06:15:47,529 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,534 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 8 2021-08-21 06:15:47,535 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,540 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 10 2021-08-21 06:15:47,540 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,545 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 14 2021-08-21 06:15:47,546 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,551 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Working on slit 16 2021-08-21 06:15:47,551 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:15:47,558 - stpipe.MasterBackgroundNrsSlitsStep.photom - INFO - Step photom done 2021-08-21 06:15:47,945 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:47,948 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:15:49,119 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 6 2021-08-21 06:15:49,123 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 3 2021-08-21 06:15:49,126 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 4 2021-08-21 06:15:49,130 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 5 2021-08-21 06:15:49,134 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 8 2021-08-21 06:15:49,137 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 10 2021-08-21 06:15:49,141 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 14 2021-08-21 06:15:49,145 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Working on slitlet 16 2021-08-21 06:15:49,149 - stpipe.MasterBackgroundNrsSlitsStep.barshadow - INFO - Step barshadow done 2021-08-21 06:15:49,534 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:49,535 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} 2021-08-21 06:15:49,543 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:15:50,729 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 0 2021-08-21 06:15:50,733 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 1 2021-08-21 06:15:50,738 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 2 2021-08-21 06:15:50,742 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 3 2021-08-21 06:15:50,746 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 4 2021-08-21 06:15:50,751 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 5 2021-08-21 06:15:50,755 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 6 2021-08-21 06:15:50,759 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Working on slit 7 2021-08-21 06:15:50,765 - stpipe.MasterBackgroundNrsSlitsStep.pathloss - INFO - Step pathloss done 2021-08-21 06:15:51,217 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:51,219 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:15:51,227 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> 2021-08-21 06:15:52,408 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 6 2021-08-21 06:15:52,412 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 3 2021-08-21 06:15:52,415 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 4 2021-08-21 06:15:52,419 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 5 2021-08-21 06:15:52,422 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 8 2021-08-21 06:15:52,426 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 10 2021-08-21 06:15:52,429 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 14 2021-08-21 06:15:52,432 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Working on slit 16 2021-08-21 06:15:52,437 - stpipe.MasterBackgroundNrsSlitsStep.flat_field - INFO - Step flat_field done 2021-08-21 06:15:52,443 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:15:54,100 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep done 2021-08-21 06:15:54,485 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). 2021-08-21 06:15:54,488 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundnrsslitsstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} 2021-08-21 06:15:54,495 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Using pre-calculated correction parameters. 2021-08-21 06:15:54,495 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Subtracting master background from each MOS source slitlet 2021-08-21 06:15:55,607 - stpipe.MasterBackgroundNrsSlitsStep - INFO - Step MasterBackgroundNrsSlitsStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/nrs_mos_with_bkgslits_srctype.fits HTTP/1.1" 200 4651200 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_masterbkg_corrpars0/nrs_mos_with_bkgslits_srctype.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_masterbkg_corrpars0/nrs_mos_with_bkgslits_srctype.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:321 PhotomStep instance created. INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:367 Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:371 Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:master_background_nrs_slits_step.py:130 Calculating master background INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 2783 out of 6875 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 1 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6707 out of 19366 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 14 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6252 out of 17963 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 17 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 16839 out of 35812 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 19 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 5129 out of 14743 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 7 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 6362 out of 17986 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 8 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 9788 out of 24450 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 9 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 10317 out of 25300 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:2008 18 flat-field values <= 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:470 Step flat_field done INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:470 Step pathloss done INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:470 Step barshadow done INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:470 Step photom done DEBUG stpipe.MasterBackgroundNrsSlitsStep:master_background_nrs_slits_step.py:244 Calculating 1D master background INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:97 Creating MOS master background from background slitlets INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:97 Creating MOS master background from background slitlets DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_6 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_5 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_10 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:105 Using background slitlet background_16 INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:115 Applying resampling and 1D extraction to background slits DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:774 Retrieving step PARS-RESAMPLESPECSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:795 No PARS-RESAMPLESPECSTEP reference files found. INFO stpipe.ResampleSpecStep:step.py:321 ResampleSpecStep instance created. INFO stpipe.ResampleSpecStep:step.py:367 Step ResampleSpecStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.ResampleSpecStep:step.py:371 Step ResampleSpecStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: kernel='square' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits INFO stpipe.ResampleSpecStep:exp_to_source.py:37 Reorganizing data from exposure nrs_mos_with_bkgslits_srctype.fits DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 37 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 36 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 38 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:exp_to_source.py:40 Copying source 39 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 274.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 275) --> (15, 275) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.170732234 -27.791419408 53.171041290 -27.791419408 53.171041290 -27.791112165 53.170732234 -27.791112165 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1278.5), (-0.5, 27.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (28, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (28, 1279) --> (15, 1279) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.157409078 -27.822745999 53.157719735 -27.822745999 53.157719735 -27.822432199 53.157409078 -27.822432199 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 781.5), (-0.5, 22.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (23, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (23, 782) --> (15, 782) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.160972994 -27.803824284 53.161281639 -27.803824284 53.161281639 -27.803514994 53.160972994 -27.803514994 DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.ResampleSpecStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data INFO stpipe.ResampleSpecStep:resample.py:155 Resampling science data DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:368 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:369 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:gwcs_drizzle.py:370 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:gwcs_drizzle.py:373 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_rnoise DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_poisson DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat INFO stpipe.ResampleSpecStep:resample.py:199 Resampling var_flat DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1011.5), (-0.5, 24.5)) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:395 Pixmap shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:396 Input Sci shape: (25, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) DEBUG stpipe.ResampleSpecStep:resample.py:397 Output Sci shape: (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:resample.py:399 Drizzling (25, 1012) --> (14, 1012) INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 INFO stpipe.ResampleSpecStep:util.py:957 Update S_REGION to POLYGON ICRS 53.168506804 -27.822558793 53.168797355 -27.822558793 53.168797355 -27.822266461 53.168506804 -27.822266461 INFO stpipe.ResampleSpecStep:step.py:470 Step ResampleSpecStep done DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:774 Retrieving step PARS-EXTRACT1DSTEP parameters from CRDS DEBUG stpipe.MasterBackgroundNrsSlitsStep:step.py:795 No PARS-EXTRACT1DSTEP reference files found. INFO stpipe.Extract1dStep:step.py:321 Extract1dStep instance created. INFO stpipe.Extract1dStep:step.py:367 Step Extract1dStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.Extract1dStep:step.py:371 Step Extract1dStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 6 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 274 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=274, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 5 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1278 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1278, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 10 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 781 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 14 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [14.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=0, ystop=14 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=781, ystart=0, ystop=14 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2912 Working on slit 16 INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. INFO stpipe.Extract1dStep:extract.py:335 Target is extended, so the entire region will be extracted. DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:439 Initial parameters: DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:440 dispaxis = 1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:441 spectral order = -1 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:442 initial xstart = 0 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:443 initial xstop = 1011 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:444 initial ystart = 0 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 13 DEBUG stpipe.Extract1dStep:extract.py:445 initial ystop = 13 DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:446 extract_width = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:447 initial src_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:449 bkg_fit = None DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:450 bkg_order = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:451 smoothing_length = 0 DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:452 independent_var = pixel DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:453 use_source_posn = False DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1701 Updated parameters: DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [13.5]] DEBUG stpipe.Extract1dStep:extract.py:1776 Converting extraction limits to [[-0.5], [13.5]] INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4011 Using extraction limits: INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=0, ystop=13 INFO stpipe.Extract1dStep:extract.py:4024 xstart=0, xstop=1011, ystart=0, ystop=13 DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Extract1dStep:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Extract1dStep:step.py:470 Step Extract1dStep done INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:120 Combining 1D background spectra into master background INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:120 Combining 1D background spectra into master background DEBUG stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:529 Using exposure time as the weight. INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:529 Using exposure time as the weight. DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 2 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 3 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 4 INFO stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:204 Accumulating data from input spectrum 4 WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:232 2 output pixel numbers were NaN WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:241 1 elements of output had no corresponding input data; WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:243 these elements will be omitted. WARNING stpipe.MasterBackgroundNrsSlitsStep:combine1d.py:243 these elements will be omitted. DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:69 Interpolating 1D master background to all MOS 2D slitlets DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep:expand_to_2d.py:160 Expanding background for slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:367 Step photom running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photom', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:33 Input is MultiSlitModel INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:142 detector: NRS1 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:145 filter: F170LP INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:149 grating: G235M DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 6 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 3 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 4 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 5 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 8 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 10 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 14 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:247 Working on slit 16 DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.MasterBackgroundNrsSlitsStep.photom:step.py:470 Step photom done INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadow', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 6 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 5 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 8 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 14 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:bar_shadow.py:66 Working on slitlet 16 INFO stpipe.MasterBackgroundNrsSlitsStep.barshadow:step.py:470 Step barshadow done INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathloss', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': 'EXTENDED'} DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:pathloss.py:358 Working on slit 7 INFO stpipe.MasterBackgroundNrsSlitsStep.pathloss:step.py:470 Step pathloss done INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'flat_field', 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field_step.py:108 Using flat field from correction pars <MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits> DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 6 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 5 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 8 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 14 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:flat_field.py:355 Working on slit 16 INFO stpipe.MasterBackgroundNrsSlitsStep.flat_field:step.py:470 Step flat_field done INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:470 Step MasterBackgroundNrsSlitsStep done INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:367 Step MasterBackgroundNrsSlitsStep running with args (<MultiSlitModel from nrs_mos_with_bkgslits_srctype.fits>,). INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:371 Step MasterBackgroundNrsSlitsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'masterbackgroundnrsslitsstep', 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}} DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:master_background_nrs_slits_step.py:116 Using pre-calculated correction parameters. INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet INFO stpipe.MasterBackgroundNrsSlitsStep:nirspec_utils.py:37 Subtracting master background from each MOS source slitlet DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.MasterBackgroundNrsSlitsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.MasterBackgroundNrsSlitsStep:step.py:470 Step MasterBackgroundNrsSlitsStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg[masterbg1d] | 0.98 | |
|
-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg1d.fits HTTP/1.1" 200 146880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg/nrs_mos_with_bkgslits_masterbg1d.fits HTTP/1.1" 200 146880 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_mos_mbkg_user[x1d] | 0.32 | |
|
-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_x1d.fits HTTP/1.1" 200 1025280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_x1d.fits HTTP/1.1" 200 1025280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_x1d.fits HTTP/1.1" 200 1025280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_mbkg_user/jw00626030001_02103_00001_nrs1_x1d.fits HTTP/1.1" 200 1025280 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_fs_mbkg_user | 8.58 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:19:53,749 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:19:53,750 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:19:53,750 - stpipe - INFO - OS: Linux 2021-08-21 06:19:53,885 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits',). 2021-08-21 06:19:53,886 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0', 'user_background': 'v2_nrs_bkg_user_clean_x1d.fits', 'save_background': False, 'force_subtract': False} 2021-08-21 06:19:56,459 - stpipe.master_background - INFO - Expanding background for slit S200A1 2021-08-21 06:19:56,461 - stpipe.master_background - INFO - Applying point source updates to FS background 2021-08-21 06:19:56,507 - stpipe.master_background - INFO - Expanding background for slit S200A2 2021-08-21 06:19:56,509 - stpipe.master_background - INFO - Applying point source updates to FS background 2021-08-21 06:19:56,551 - stpipe.master_background - INFO - Expanding background for slit S400A1 2021-08-21 06:19:56,553 - stpipe.master_background - INFO - Applying point source updates to FS background 2021-08-21 06:19:56,595 - stpipe.master_background - INFO - Expanding background for slit S1600A1 2021-08-21 06:19:56,596 - stpipe.master_background - INFO - Applying point source updates to FS background 2021-08-21 06:19:59,318 - stpipe.master_background - INFO - Saved model in nrs_sci+bkg_master_background.fits 2021-08-21 06:19:59,318 - stpipe.master_background - INFO - Step master_background done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/v2_nrs_bkg_user_clean_x1d.fits HTTP/1.1" 200 221760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/v2_nrs_bkg_user_clean_x1d.fits HTTP/1.1" 200 221760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/v2_nrs_bkg_user_clean_x1d.fits HTTP/1.1" 200 221760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/v2_nrs_bkg_user_clean_x1d.fits HTTP/1.1" 200 221760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs_sci+bkg_cal.fits HTTP/1.1" 200 9273600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs_sci+bkg_cal.fits HTTP/1.1" 200 9273600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs_sci+bkg_cal.fits HTTP/1.1" 200 9273600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs_sci+bkg_cal.fits HTTP/1.1" 200 9273600 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0', 'user_background': 'v2_nrs_bkg_user_clean_x1d.fits', 'save_background': False, 'force_subtract': False} DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fs_mbkg_user0/nrs_sci+bkg_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening v2_nrs_bkg_user_clean_x1d.fits as <class 'jwst.datamodels.spec.SpecModel'> DEBUG stpipe.master_background:util.py:193 Opening v2_nrs_bkg_user_clean_x1d.fits as <class 'jwst.datamodels.spec.SpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S200A1 INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S200A1 INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S200A2 INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S200A2 INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S400A1 INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S400A1 INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S1600A1 INFO stpipe.master_background:expand_to_2d.py:160 Expanding background for slit S1600A1 INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background INFO stpipe.master_background:nirspec_utils.py:187 Applying point source updates to FS background DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in nrs_sci+bkg_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_mbkg_user/nrs_sci+bkg_master_background.fits HTTP/1.1" 200 9273600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_mbkg_user/nrs_sci+bkg_master_background.fits HTTP/1.1" 200 9273600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_mbkg_user/nrs_sci+bkg_master_background.fits HTTP/1.1" 200 9273600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_fs_mbkg_user/nrs_sci+bkg_master_background.fits HTTP/1.1" 200 9273600 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_masterbackground.py::test_nirspec_ifu_mbkg_nod[off-source] | 177.35 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:25:32,203 - stpipe.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:25:32,203 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:25:32,203 - stpipe - INFO - OS: Linux 2021-08-21 06:25:33,134 - stpipe.master_background - INFO - Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/nirspec_spec3_asn.json',). 2021-08-21 06:25:33,135 - stpipe.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0', 'user_background': None, 'save_background': True, 'force_subtract': False} 2021-08-21 06:25:47,075 - stpipe.master_background - INFO - Using exposure time as the weight. 2021-08-21 06:25:47,076 - stpipe.master_background - WARNING - There is no WCS in the input. 2021-08-21 06:25:47,088 - stpipe.master_background - INFO - Accumulating data from input spectrum 1 2021-08-21 06:27:55,388 - stpipe.master_background - INFO - Applying point source pathloss updates to IFU background 2021-08-21 06:27:55,388 - stpipe.master_background - WARNING - Pathloss_point array not found in input 2021-08-21 06:27:55,389 - stpipe.master_background - WARNING - Skipping pathloss background updates 2021-08-21 06:28:02,281 - stpipe.master_background - INFO - Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits 2021-08-21 06:28:07,656 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits 2021-08-21 06:28:13,451 - stpipe.master_background - INFO - Saved model in ifu_prism_source_on_NRS1_master_background.fits 2021-08-21 06:28:13,452 - stpipe.master_background - INFO - Step master_background done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nirspec_spec3_asn.json HTTP/1.1" 200 1911 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_on_NRS1_cal.fits HTTP/1.1" 200 136497600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/ifu_prism_source_off_NRS1_x1d.fits HTTP/1.1" 200 175680 DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.master_background:step.py:367 Step master_background running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/nirspec_spec3_asn.json',). INFO stpipe.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0', 'user_background': None, 'save_background': True, 'force_subtract': False} DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_mbkg_nod_off_0/ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_on_NRS1_cal.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:193 Opening ifu_prism_source_off_NRS1_x1d.fits as <class 'jwst.datamodels.multispec.MultiSpecModel'> DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:fits_support.py:484 Skipping FITS keyword updating except for BinTableHDU and its associated header keywords. DEBUG stpipe.master_background:master_background_step.py:121 Copying BACKGROUND column to SURF_BRIGHT DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. DEBUG stpipe.master_background:combine1d.py:564 Using exptime_key = exposure_time. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. INFO stpipe.master_background:combine1d.py:529 Using exposure time as the weight. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. WARNING stpipe.master_background:combine1d.py:89 There is no WCS in the input. DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 INFO stpipe.master_background:combine1d.py:204 Accumulating data from input spectrum 1 DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background INFO stpipe.master_background:nirspec_utils.py:146 Applying point source pathloss updates to IFU background WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:152 Pathloss_point array not found in input WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates WARNING stpipe.master_background:nirspec_utils.py:153 Skipping pathloss background updates DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_off_NRS1_o001_masterbg1d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_o001_masterbg2d.fits INFO stpipe.master_background:step.py:928 Saved model in ifu_prism_source_on_NRS1_master_background.fits INFO stpipe.master_background:step.py:470 Step master_background done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_off_NRS1_o001_masterbg1d.fits HTTP/1.1" 200 115200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_off_NRS1_o001_masterbg1d.fits HTTP/1.1" 200 115200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_off_NRS1_o001_masterbg1d.fits HTTP/1.1" 200 115200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu_mbkg_nod/ifu_prism_source_off_NRS1_o001_masterbg1d.fits HTTP/1.1" 200 115200 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[assign_wcs] | 78.45 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:31:13,831 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created. 2021-08-21 06:31:13,832 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created. 2021-08-21 06:31:13,836 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created. 2021-08-21 06:31:13,837 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created. 2021-08-21 06:31:13,837 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created. 2021-08-21 06:31:13,838 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created. 2021-08-21 06:31:15,142 - stpipe.Spec2Pipeline.master_background - INFO - MasterBackgroundNrsSlitsStep instance created. 2021-08-21 06:31:15,143 - stpipe.Spec2Pipeline.master_background.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:31:15,144 - stpipe.Spec2Pipeline.master_background.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:31:15,144 - stpipe.Spec2Pipeline.master_background.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:31:15,145 - stpipe.Spec2Pipeline.master_background.photom - INFO - PhotomStep instance created. 2021-08-21 06:31:15,146 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created. 2021-08-21 06:31:15,147 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created. 2021-08-21 06:31:15,147 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created. 2021-08-21 06:31:15,148 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created. 2021-08-21 06:31:15,149 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created. 2021-08-21 06:31:15,150 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created. 2021-08-21 06:31:15,150 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created. 2021-08-21 06:31:15,151 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created. 2021-08-21 06:31:15,152 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:31:15,153 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:31:15,154 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:31:15,154 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:31:15,155 - stpipe - INFO - OS: Linux 2021-08-21 06:31:15,324 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). 2021-08-21 06:31:15,336 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} 2021-08-21 06:31:15,376 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] 2021-08-21 06:31:15,464 - stpipe.Spec2Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 06:31:15,466 - stpipe.Spec2Pipeline - INFO - Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. 2021-08-21 06:31:15,467 - stpipe.Spec2Pipeline - INFO - Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. 2021-08-21 06:31:15,469 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. 2021-08-21 06:31:15,471 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. 2021-08-21 06:31:15,473 - stpipe.Spec2Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:31:15,473 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. 2021-08-21 06:31:15,474 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. 2021-08-21 06:31:15,476 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'. 2021-08-21 06:31:15,476 - stpipe.Spec2Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:31:15,476 - stpipe.Spec2Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 06:31:15,477 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. 2021-08-21 06:31:15,479 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'. 2021-08-21 06:31:15,479 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'. 2021-08-21 06:31:15,479 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. 2021-08-21 06:31:15,481 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. 2021-08-21 06:31:15,482 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'. 2021-08-21 06:31:15,482 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'. 2021-08-21 06:31:15,482 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'. 2021-08-21 06:31:15,483 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'. 2021-08-21 06:31:15,483 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. 2021-08-21 06:31:15,484 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. 2021-08-21 06:31:15,486 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. 2021-08-21 06:31:15,488 - stpipe.Spec2Pipeline - INFO - Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. 2021-08-21 06:31:15,489 - stpipe.Spec2Pipeline - INFO - Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. 2021-08-21 06:31:15,491 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'. 2021-08-21 06:31:15,491 - stpipe.Spec2Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:31:15,491 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. 2021-08-21 06:31:15,493 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'. 2021-08-21 06:31:15,493 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. 2021-08-21 06:31:15,495 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. 2021-08-21 06:31:15,496 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'. 2021-08-21 06:31:15,497 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ... 2021-08-21 06:31:15,497 - stpipe.Spec2Pipeline - INFO - Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2021-08-21 06:31:15,498 - stpipe.Spec2Pipeline - INFO - Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... 2021-08-21 06:31:15,713 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). 2021-08-21 06:31:15,714 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:31:15,873 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 2021-08-21 06:31:15,934 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0 deg 2021-08-21 06:31:15,934 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3370744 deg 2021-08-21 06:31:15,934 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.01862314751306485 deg 2021-08-21 06:31:15,935 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:31:16,150 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [1, 2, 3, 4, 10] 2021-08-21 06:31:16,150 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 5 open slitlets 2021-08-21 06:31:16,180 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0 deg 2021-08-21 06:31:16,180 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3370744 deg 2021-08-21 06:31:16,180 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: -0.01862314751306485 deg 2021-08-21 06:31:16,181 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg 2021-08-21 06:31:16,190 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:31:16,312 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 1 2021-08-21 06:31:16,313 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:31:16,313 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 4 open slits in quadrant 3 2021-08-21 06:31:16,347 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 4 2021-08-21 06:31:16,355 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:31:16,478 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/jw95065006001_0_short_msa.fits'} 2021-08-21 06:31:16,750 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs 2021-08-21 06:31:17,356 - stpipe.Spec2Pipeline.assign_wcs - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits 2021-08-21 06:31:17,356 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done 2021-08-21 06:31:17,544 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). 2021-08-21 06:31:17,545 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} 2021-08-21 06:31:17,545 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped. 2021-08-21 06:31:17,546 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done 2021-08-21 06:31:17,728 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). 2021-08-21 06:31:17,729 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} 2021-08-21 06:31:17,729 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped. 2021-08-21 06:31:17,730 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done 2021-08-21 06:31:17,911 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>,). 2021-08-21 06:31:17,912 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} 2021-08-21 06:31:17,930 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json 2021-08-21 06:31:17,931 - stpipe.JwstStep - INFO - JwstStep instance created. 2021-08-21 06:31:18,063 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0 deg 2021-08-21 06:31:18,064 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.3370744 deg 2021-08-21 06:31:18,064 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: -0.01862314751306485 deg 2021-08-21 06:31:18,064 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg 2021-08-21 06:31:18,074 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[1.66e-06, 3.17e-06] 2021-08-21 06:31:18,195 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1 2021-08-21 06:31:18,237 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2 2021-08-21 06:31:18,263 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3 2021-08-21 06:31:18,337 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4 2021-08-21 06:31:18,362 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:31:31,654 - stpipe.Spec2Pipeline.msa_flagging - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits 2021-08-21 06:31:31,654 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done 2021-08-21 06:31:31,969 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits>,). 2021-08-21 06:31:31,970 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} 2021-08-21 06:31:31,989 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC 2021-08-21 06:31:32,168 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 1 2021-08-21 06:31:32,168 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 896 2048 2021-08-21 06:31:32,168 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1845 1872 2021-08-21 06:31:32,316 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:31:32,326 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 2021-08-21 06:31:32,326 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 2021-08-21 06:31:32,490 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 2 2021-08-21 06:31:32,491 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 697 2048 2021-08-21 06:31:32,491 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1614 1643 2021-08-21 06:31:32,646 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:31:32,654 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 2021-08-21 06:31:32,654 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 2021-08-21 06:31:33,052 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 3 2021-08-21 06:31:33,053 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 670 2048 2021-08-21 06:31:33,053 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1474 1503 2021-08-21 06:31:33,211 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:31:33,221 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 2021-08-21 06:31:33,221 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 2021-08-21 06:31:33,405 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 4 2021-08-21 06:31:33,405 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 874 2048 2021-08-21 06:31:33,405 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1655 1682 2021-08-21 06:31:33,560 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:31:33,569 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 2021-08-21 06:31:33,570 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 2021-08-21 06:31:33,736 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10 2021-08-21 06:31:33,736 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 591 2024 2021-08-21 06:31:33,736 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 707 735 2021-08-21 06:31:33,887 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed 2021-08-21 06:31:33,895 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 2021-08-21 06:31:33,895 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 2021-08-21 06:31:35,390 - stpipe.Spec2Pipeline.extract_2d - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits 2021-08-21 06:31:35,390 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done 2021-08-21 06:31:35,602 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits>,). 2021-08-21 06:31:35,603 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} 2021-08-21 06:31:35,611 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC 2021-08-21 06:31:35,611 - stpipe.Spec2Pipeline.srctype - INFO - source_id=227, stellarity=1.0000, type=POINT 2021-08-21 06:31:35,612 - stpipe.Spec2Pipeline.srctype - INFO - source_id=279, stellarity=0.1000, type=EXTENDED 2021-08-21 06:31:35,612 - stpipe.Spec2Pipeline.srctype - INFO - source_id=443, stellarity=1.0000, type=POINT 2021-08-21 06:31:35,613 - stpipe.Spec2Pipeline.srctype - INFO - source_id=482, stellarity=0.0000, type=EXTENDED 2021-08-21 06:31:35,613 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2315, stellarity=0.2000, type=EXTENDED 2021-08-21 06:31:36,436 - stpipe.Spec2Pipeline.srctype - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits 2021-08-21 06:31:36,436 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done 2021-08-21 06:31:36,662 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). 2021-08-21 06:31:36,665 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} 2021-08-21 06:31:36,673 - stpipe.Spec2Pipeline.master_background - WARNING - No background slits available for creating master background. Skipping 2021-08-21 06:31:36,674 - stpipe.Spec2Pipeline.master_background - INFO - Step master_background done 2021-08-21 06:31:36,881 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). 2021-08-21 06:31:36,882 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} 2021-08-21 06:31:36,907 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf 2021-08-21 06:31:37,886 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 1 2021-08-21 06:31:37,985 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:31:37,990 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 2 2021-08-21 06:31:37,990 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a POINT source type in slit 3 2021-08-21 06:31:38,148 - stpipe.Spec2Pipeline.wavecorr - INFO - Using wavelength zero-point correction for aperture MOS 2021-08-21 06:31:38,154 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 4 2021-08-21 06:31:38,154 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 10 2021-08-21 06:31:38,993 - stpipe.Spec2Pipeline.wavecorr - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits 2021-08-21 06:31:38,993 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done 2021-08-21 06:31:39,288 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits>,). 2021-08-21 06:31:39,289 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:31:46,715 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 1 2021-08-21 06:31:51,152 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 2 2021-08-21 06:31:55,945 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 3 2021-08-21 06:32:01,153 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 4 2021-08-21 06:32:05,603 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10 2021-08-21 06:32:12,624 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits 2021-08-21 06:32:12,624 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done 2021-08-21 06:32:12,908 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits>,). 2021-08-21 06:32:12,909 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:32:12,934 - stpipe.Spec2Pipeline.pathloss - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:32:12,971 - stpipe.Spec2Pipeline.pathloss - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:32:13,959 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 0 2021-08-21 06:32:13,959 - stpipe.Spec2Pipeline.pathloss - WARNING - Source is outside slit. 2021-08-21 06:32:13,959 - stpipe.Spec2Pipeline.pathloss - WARNING - No correction provided for slit 0. Skipping 2021-08-21 06:32:13,959 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 1 2021-08-21 06:32:13,976 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 2 2021-08-21 06:32:13,993 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 3 2021-08-21 06:32:14,011 - stpipe.Spec2Pipeline.pathloss - INFO - Working on slit 4 2021-08-21 06:32:14,911 - stpipe.Spec2Pipeline.pathloss - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits 2021-08-21 06:32:14,911 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done 2021-08-21 06:32:15,197 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits>,). 2021-08-21 06:32:15,198 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:32:15,222 - stpipe.Spec2Pipeline.barshadow - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:32:15,958 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 1 2021-08-21 06:32:15,968 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2021-08-21 06:32:15,972 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 2 2021-08-21 06:32:16,180 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 3 2021-08-21 06:32:16,191 - stpipe.Spec2Pipeline.barshadow - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2021-08-21 06:32:16,195 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 4 2021-08-21 06:32:16,369 - stpipe.Spec2Pipeline.barshadow - INFO - Working on slitlet 10 2021-08-21 06:32:17,827 - stpipe.Spec2Pipeline.barshadow - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits 2021-08-21 06:32:17,827 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done 2021-08-21 06:32:18,130 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits>,). 2021-08-21 06:32:18,131 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} 2021-08-21 06:32:18,179 - stpipe.Spec2Pipeline.photom - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:32:18,179 - stpipe.Spec2Pipeline.photom - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:32:18,862 - stpipe.Spec2Pipeline.photom - INFO - Using instrument: NIRSPEC 2021-08-21 06:32:18,862 - stpipe.Spec2Pipeline.photom - INFO - detector: NRS1 2021-08-21 06:32:18,862 - stpipe.Spec2Pipeline.photom - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:32:18,862 - stpipe.Spec2Pipeline.photom - INFO - filter: F170LP 2021-08-21 06:32:18,862 - stpipe.Spec2Pipeline.photom - INFO - grating: G235M 2021-08-21 06:32:18,917 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 1 2021-08-21 06:32:18,917 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:32:18,923 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 2 2021-08-21 06:32:18,923 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:32:18,929 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 3 2021-08-21 06:32:18,929 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 1 2021-08-21 06:32:18,935 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 4 2021-08-21 06:32:18,936 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:32:18,941 - stpipe.Spec2Pipeline.photom - INFO - Working on slit 10 2021-08-21 06:32:18,942 - stpipe.Spec2Pipeline.photom - INFO - PHOTMJSR value: 4.25452e+10 2021-08-21 06:32:18,952 - stpipe.Spec2Pipeline.photom - INFO - Step photom done 2021-08-21 06:32:19,175 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits>,). 2021-08-21 06:32:19,177 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:32:19,207 - stpipe.Spec2Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:32:19,208 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:32:19,208 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:32:19,208 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:32:19,208 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:32:19,208 - stpipe.Spec2Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:32:19,208 - stpipe.Spec2Pipeline.resample_spec - INFO - Reorganizing data from exposure f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits 2021-08-21 06:32:19,923 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:32:19,971 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1152) --> (15, 1152) 2021-08-21 06:32:19,980 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:32:20,028 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1152) --> (15, 1152) 2021-08-21 06:32:20,039 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:32:20,084 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1152) --> (15, 1152) 2021-08-21 06:32:20,095 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:32:20,142 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1152) --> (15, 1152) 2021-08-21 06:32:20,167 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.171193017 -27.767330074 53.171662542 -27.767330074 53.171662542 -27.767281307 53.171193017 -27.767281307 2021-08-21 06:32:20,377 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:32:20,431 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1351) --> (15, 1351) 2021-08-21 06:32:20,442 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:32:20,499 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1351) --> (15, 1351) 2021-08-21 06:32:20,511 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:32:20,564 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1351) --> (15, 1351) 2021-08-21 06:32:20,576 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:32:20,630 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1351) --> (15, 1351) 2021-08-21 06:32:20,657 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.162809582 -27.771952144 53.163276428 -27.771952144 53.163276428 -27.771903064 53.162809582 -27.771903064 2021-08-21 06:32:20,866 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:32:20,920 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1378) --> (15, 1378) 2021-08-21 06:32:20,932 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:32:20,987 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1378) --> (15, 1378) 2021-08-21 06:32:21,000 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:32:21,055 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1378) --> (15, 1378) 2021-08-21 06:32:21,068 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:32:21,124 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (29, 1378) --> (15, 1378) 2021-08-21 06:32:21,152 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.158078356 -27.772056320 53.158543544 -27.772056320 53.158543544 -27.772007368 53.158078356 -27.772007368 2021-08-21 06:32:21,353 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:32:21,402 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1174) --> (15, 1174) 2021-08-21 06:32:21,412 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:32:21,460 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1174) --> (15, 1174) 2021-08-21 06:32:21,471 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:32:21,518 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1174) --> (15, 1174) 2021-08-21 06:32:21,529 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:32:21,577 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (27, 1174) --> (15, 1174) 2021-08-21 06:32:21,602 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.164790489 -27.767041084 53.165257796 -27.767041084 53.165257796 -27.766992508 53.164790489 -27.766992508 2021-08-21 06:32:21,832 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:32:21,889 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:32:21,901 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:32:21,958 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:32:21,972 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:32:22,025 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:32:22,038 - stpipe.Spec2Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:32:22,093 - stpipe.Spec2Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (15, 1433) 2021-08-21 06:32:22,329 - stpipe.Spec2Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 53.132680683 -27.770732840 53.133136851 -27.770732840 53.133136851 -27.770684903 53.132680683 -27.770684903 2021-08-21 06:32:22,631 - stpipe.Spec2Pipeline.resample_spec - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits 2021-08-21 06:32:22,631 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:32:22,810 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits>,). 2021-08-21 06:32:22,812 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:32:22,837 - stpipe.Spec2Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:32:22,855 - stpipe.Spec2Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:32:22,891 - stpipe.Spec2Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:32:22,891 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 1 2021-08-21 06:32:22,901 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying position offset of 2.30 to ystart and ystop 2021-08-21 06:32:22,902 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:32:22,902 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1151, ystart=5.800466345080089, ystop=12.800466345080089 2021-08-21 06:32:23,095 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:32:24,914 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 2 2021-08-21 06:32:24,914 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:32:24,923 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:32:24,923 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1350, ystart=3.5, ystop=10.5 2021-08-21 06:32:25,150 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 3 2021-08-21 06:32:25,162 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying position offset of 2.61 to ystart and ystop 2021-08-21 06:32:25,162 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:32:25,162 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1377, ystart=6.108733144627411, ystop=13.108733144627411 2021-08-21 06:32:25,390 - stpipe.Spec2Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:32:27,543 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 4 2021-08-21 06:32:27,544 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:32:27,552 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:32:27,552 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1173, ystart=3.5, ystop=10.5 2021-08-21 06:32:27,749 - stpipe.Spec2Pipeline.extract_1d - INFO - Working on slit 10 2021-08-21 06:32:27,750 - stpipe.Spec2Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:32:27,759 - stpipe.Spec2Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:32:27,759 - stpipe.Spec2Pipeline.extract_1d - INFO - xstart=0, xstop=1432, ystart=3.5, ystop=10.5 2021-08-21 06:32:28,172 - stpipe.Spec2Pipeline.extract_1d - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits 2021-08-21 06:32:28,172 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:32:28,172 - stpipe.Spec2Pipeline - INFO - Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod 2021-08-21 06:32:28,172 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2 2021-08-21 06:32:29,288 - stpipe.Spec2Pipeline - INFO - Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits 2021-08-21 06:32:29,288 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw95065006001_0_short_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw95065006001_0_short_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw95065006001_0_short_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw95065006001_0_short_msa.fits HTTP/1.1" 200 538560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits HTTP/1.1" 200 83940480 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-MASTERBACKGROUNDNRSSLITSSTEP parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:pipeline.py:182 No PARS-MASTERBACKGROUNDNRSSLITSSTEP reference files found. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC2PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC2PIPELINE reference files found. INFO stpipe.Spec2Pipeline:step.py:321 Spec2Pipeline instance created. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:321 BackgroundStep instance created. INFO stpipe.Spec2Pipeline.assign_wcs:step.py:321 AssignWcsStep instance created. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:321 ImprintStep instance created. INFO stpipe.Spec2Pipeline.msa_flagging:step.py:321 MSAFlagOpenStep instance created. INFO stpipe.Spec2Pipeline.extract_2d:step.py:321 Extract2dStep instance created. INFO stpipe.Spec2Pipeline.master_background:step.py:321 MasterBackgroundNrsSlitsStep instance created. INFO stpipe.Spec2Pipeline.master_background.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.master_background.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.master_background.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.master_background.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.wavecorr:step.py:321 WavecorrStep instance created. INFO stpipe.Spec2Pipeline.flat_field:step.py:321 FlatFieldStep instance created. INFO stpipe.Spec2Pipeline.srctype:step.py:321 SourceTypeStep instance created. INFO stpipe.Spec2Pipeline.straylight:step.py:321 StraylightStep instance created. INFO stpipe.Spec2Pipeline.fringe:step.py:321 FringeStep instance created. INFO stpipe.Spec2Pipeline.pathloss:step.py:321 PathLossStep instance created. INFO stpipe.Spec2Pipeline.barshadow:step.py:321 BarShadowStep instance created. INFO stpipe.Spec2Pipeline.photom:step.py:321 PhotomStep instance created. INFO stpipe.Spec2Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec2Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec2Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec2Pipeline:step.py:367 Step Spec2Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits',). INFO stpipe.Spec2Pipeline:step.py:371 Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_bsub': False, 'fail_on_exception': True, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'method': 'ModShepard', 'roi': 50, 'power': 1.0}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}}} DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Spec2Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits' reftypes = ['apcorr', 'area', 'barshadow', 'camera', 'collimator', 'cubepar', 'dflat', 'disperser', 'distortion', 'drizpars', 'extract1d', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'msaoper', 'ote', 'pathloss', 'photom', 'regions', 'resol', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg'] INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for AREA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for BARSHADOW reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DISTORTION reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FILTEROFFSET reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FLAT reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for FRINGE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUFORE reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUPOST reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for IFUSLICER reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PATHLOSS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for PHOTOM reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for REGIONS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for SPECWCS reference file is 'N/A'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'. INFO stpipe.Spec2Pipeline:pipeline.py:288 Prefetch for WFSSBKG reference file is 'N/A'. INFO stpipe.Spec2Pipeline:calwebb_spec2.py:88 Starting calwebb_spec2 ... INFO stpipe.Spec2Pipeline:calwebb_spec2.py:106 Processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:172 Working on input /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits ... DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:324 Science data does not allow direct background subtraction. Skipping "bkg_subtract". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:336 Science data does not allow imprint processing. Skipping "imprint_subtraction". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:347 Science data does not allow stray light correction. Skipping "straylight". DEBUG stpipe.Spec2Pipeline:calwebb_spec2.py:352 Science data does not allow fringe correction. Skipping "fringe". INFO stpipe.Spec2Pipeline.assign_wcs:step.py:367 Step assign_wcs running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod.fits>,). INFO stpipe.Spec2Pipeline.assign_wcs:step.py:371 Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 1 [(1, 1, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 1, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 1, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 1, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 110, 443, 'N', 'OPEN', 0.384, 1.4085, 1, 'Y'), (3, 1, 3, 233, 111, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 112, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 74, 482, 'N', 'OPEN', 0.15899998, 1.1515, 1, 'Y'), (4, 1, 3, 157, 75, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 76, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 1, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N')] DEBUG stpipe.Spec2Pipeline.assign_wcs:nirspec.py:604 msa_data with msa_metadata_id = 1 [(1, 1, 3, 152, 36, 227, 'N', 'OPEN', -0.4635, 0.6463, 1, 'Y'), (1, 1, 3, 152, 37, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (1, 1, 3, 152, 38, 227, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 82, 279, 'N', 'OPEN', 0.195, 1.0469, 1, 'Y'), (2, 1, 3, 225, 83, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (2, 1, 3, 225, 84, 279, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 110, 443, 'N', 'OPEN', 0.384, 1.4085, 1, 'Y'), (3, 1, 3, 233, 111, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (3, 1, 3, 233, 112, 443, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 74, 482, 'N', 'OPEN', 0.15899998, 1.1515, 1, 'Y'), (4, 1, 3, 157, 75, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (4, 1, 3, 157, 76, 482, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 22, 2315, 'N', 'OPEN', 0.14859998, 0.8781, 1, 'Y'), (10, 1, 4, 251, 23, 2315, 'Y', 'OPEN', nan, nan, 1, 'N'), (10, 1, 4, 251, 24, 2315, 'Y', 'OPEN', nan, nan, 1, 'N')] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [1, 2, 3, 4, 10] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:423 Slits projected on detector NRS1: [1, 2, 3, 4, 10] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 5 open slitlets INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:307 Computing WCS for 5 open slitlets DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1346 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1347 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1351 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 4 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 4 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 1 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/jw95065006001_0_short_msa.fits'} INFO stpipe.Spec2Pipeline.assign_wcs:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0037.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/jw95065006001_0_short_msa.fits'} DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.assign_wcs:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.Spec2Pipeline.assign_wcs:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits INFO stpipe.Spec2Pipeline.assign_wcs:step.py:470 Step assign_wcs done INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:367 Step bkg_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:371 Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None} INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.bkg_subtract:step.py:470 Step bkg_subtract done INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:367 Step imprint_subtract running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>, []). INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:371 Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:401 Step skipped. INFO stpipe.Spec2Pipeline.imprint_subtract:step.py:470 Step imprint_subtract done INFO stpipe.Spec2Pipeline.msa_flagging:step.py:367 Step msa_flagging running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits>,). INFO stpipe.Spec2Pipeline.msa_flagging:step.py:371 Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:msaflagopen_step.py:25 Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json INFO stpipe.JwstStep:step.py:321 JwstStep instance created. DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1346 gwa_ytilt is 0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1347 gwa_xtilt is 0.3370744 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1351 theta_y correction: -0.01862314751306485 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:329 SPORDER= -1, wrange=[1.66e-06, 3.17e-06] DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 5 open slits in quadrant 1 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 2 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 9 open slits in quadrant 3 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 3 open slits in quadrant 4 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.Spec2Pipeline.msa_flagging:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.msa_flagging:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.msa_flagging:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits INFO stpipe.Spec2Pipeline.msa_flagging:step.py:470 Step msa_flagging done INFO stpipe.Spec2Pipeline.extract_2d:step.py:367 Step extract_2d running with args (<ImageModel(2048, 2048) from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits>,). INFO stpipe.Spec2Pipeline.extract_2d:step.py:371 Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'slit_name': None, 'extract_orders': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'grism_objects': None, 'mmag_extract': 99.0} DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_2d:extract_2d.py:58 EXP_TYPE is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 1 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 896 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 896 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1845 1872 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1845 1872 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.171673590 -27.767303828 53.171170658 -27.767251593 53.171163952 -27.767305440 53.171666885 -27.767357681 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 2 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 697 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 697 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1614 1643 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1614 1643 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.163311924 -27.771928396 53.162811061 -27.771875742 53.162804425 -27.771929534 53.163305287 -27.771982194 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 3 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 670 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 670 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1474 1503 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1474 1503 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.158573864 -27.772032040 53.158074255 -27.771979468 53.158067625 -27.772033209 53.158567233 -27.772085787 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 4 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 874 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 874 2048 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1655 1682 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 1655 1682 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.165273205 -27.767015323 53.164771977 -27.766963223 53.164765279 -27.767016991 53.165266506 -27.767069097 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:213 Name of subarray extracted: 10 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 591 2024 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:214 Subarray x-extents are: 591 2024 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 707 735 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:215 Subarray y-extents are: 707 735 DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:250 Input model type is ImageModel DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 DEBUG stpipe.Spec2Pipeline.extract_2d:nirspec.py:150 slit.ymin -0.6000000000000001 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:168 set slit_attributes completed INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:util.py:957 Update S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:nirspec.py:80 Updated S_REGION to POLYGON ICRS 53.133157735 -27.770707668 53.132664763 -27.770655867 53.132658121 -27.770709326 53.133151094 -27.770761133 INFO stpipe.Spec2Pipeline.extract_2d:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits INFO stpipe.Spec2Pipeline.extract_2d:step.py:470 Step extract_2d done INFO stpipe.Spec2Pipeline.srctype:step.py:367 Step srctype running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_extract_2d.fits>,). INFO stpipe.Spec2Pipeline.srctype:step.py:371 Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.srctype:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:35 Input EXP_TYPE is NRS_MSASPEC INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=227, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=227, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=279, stellarity=0.1000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=279, stellarity=0.1000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=443, stellarity=1.0000, type=POINT INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=482, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=482, stellarity=0.0000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2315, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:srctype.py:146 source_id=2315, stellarity=0.2000, type=EXTENDED INFO stpipe.Spec2Pipeline.srctype:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits INFO stpipe.Spec2Pipeline.srctype:step.py:470 Step srctype done INFO stpipe.Spec2Pipeline.master_background:step.py:367 Step master_background running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). INFO stpipe.Spec2Pipeline.master_background:step.py:371 Step master_background parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None}}} DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.master_background:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". WARNING stpipe.Spec2Pipeline.master_background:master_background_nrs_slits_step.py:122 No background slits available for creating master background. Skipping INFO stpipe.Spec2Pipeline.master_background:step.py:470 Step master_background done INFO stpipe.Spec2Pipeline.wavecorr:step.py:367 Step wavecorr running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_srctype.fits>,). INFO stpipe.Spec2Pipeline.wavecorr:step.py:371 Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0'} DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr_step.py:54 Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0002.asdf DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 1 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 1 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 2 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 3 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a POINT source type in slit 3 DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.wavecorr:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:139 Using wavelength zero-point correction for aperture MOS INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 4 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:wavecorr.py:214 Detected a EXTENDED source type in slit 10 INFO stpipe.Spec2Pipeline.wavecorr:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits INFO stpipe.Spec2Pipeline.wavecorr:step.py:470 Step wavecorr done INFO stpipe.Spec2Pipeline.flat_field:step.py:367 Step flat_field running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_wavecorr.fits>,). INFO stpipe.Spec2Pipeline.flat_field:step.py:371 Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 1 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 1 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 2 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 2 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 3 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 3 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 4 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 4 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 INFO stpipe.Spec2Pipeline.flat_field:flat_field.py:355 Working on slit 10 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1988 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.flat_field:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.flat_field:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits INFO stpipe.Spec2Pipeline.flat_field:step.py:470 Step flat_field done INFO stpipe.Spec2Pipeline.pathloss:step.py:367 Step pathloss running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_flat_field.fits>,). INFO stpipe.Spec2Pipeline.pathloss:step.py:371 Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.pathloss:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 0 WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:683 Source is outside slit. WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:368 No correction provided for slit 0. Skipping WARNING stpipe.Spec2Pipeline.pathloss:pathloss.py:368 No correction provided for slit 0. Skipping INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 1 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 2 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 3 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 INFO stpipe.Spec2Pipeline.pathloss:pathloss.py:358 Working on slit 4 DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.pathloss:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.pathloss:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits INFO stpipe.Spec2Pipeline.pathloss:step.py:470 Step pathloss done INFO stpipe.Spec2Pipeline.barshadow:step.py:367 Step barshadow running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_pathloss.fits>,). INFO stpipe.Spec2Pipeline.barshadow:step.py:371 Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.Spec2Pipeline.barshadow:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.barshadow:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.barshadow:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits INFO stpipe.Spec2Pipeline.barshadow:step.py:470 Step barshadow done INFO stpipe.Spec2Pipeline.photom:step.py:367 Step photom running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_barshadow.fits>,). INFO stpipe.Spec2Pipeline.photom:step.py:371 Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'inverse': False, 'source_type': None} DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.Spec2Pipeline.photom:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:141 Using instrument: NIRSPEC INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:142 detector: NRS1 INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:145 filter: F170LP INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M INFO stpipe.Spec2Pipeline.photom:photom.py:149 grating: G235M DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.photom:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 2 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 2 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 3 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 1 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 4 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 4 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 INFO stpipe.Spec2Pipeline.photom:photom.py:247 Working on slit 10 DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness DEBUG stpipe.Spec2Pipeline.photom:photom.py:696 Converting conversion factor from flux to surface brightness INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:photom.py:714 PHOTMJSR value: 4.25452e+10 INFO stpipe.Spec2Pipeline.photom:step.py:470 Step photom done INFO stpipe.Spec2Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits>,). INFO stpipe.Spec2Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits INFO stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:37 Reorganizing data from exposure f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1151.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1152) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1152) --> (15, 1152) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.171193017 -27.767330074 53.171662542 -27.767330074 53.171662542 -27.767281307 53.171193017 -27.767281307 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.171193017 -27.767330074 53.171662542 -27.767330074 53.171662542 -27.767281307 53.171193017 -27.767281307 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1350.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1351) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1351) --> (15, 1351) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.162809582 -27.771952144 53.163276428 -27.771952144 53.163276428 -27.771903064 53.162809582 -27.771903064 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.162809582 -27.771952144 53.163276428 -27.771952144 53.163276428 -27.771903064 53.162809582 -27.771903064 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1377.5), (-0.5, 28.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1378) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (29, 1378) --> (15, 1378) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.158078356 -27.772056320 53.158543544 -27.772056320 53.158543544 -27.772007368 53.158078356 -27.772007368 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.158078356 -27.772056320 53.158543544 -27.772056320 53.158543544 -27.772007368 53.158078356 -27.772007368 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1173.5), (-0.5, 26.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1174) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (27, 1174) --> (15, 1174) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.164790489 -27.767041084 53.165257796 -27.767041084 53.165257796 -27.766992508 53.164790489 -27.766992508 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.164790489 -27.767041084 53.165257796 -27.767041084 53.165257796 -27.766992508 53.164790489 -27.766992508 DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec2Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec2Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) DEBUG stpipe.Spec2Pipeline.resample_spec:resample.py:397 Output Sci shape: (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (15, 1433) INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.132680683 -27.770732840 53.133136851 -27.770732840 53.133136851 -27.770684903 53.132680683 -27.770684903 INFO stpipe.Spec2Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 53.132680683 -27.770732840 53.133136851 -27.770732840 53.133136851 -27.770684903 53.132680683 -27.770684903 INFO stpipe.Spec2Pipeline.resample_spec:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits INFO stpipe.Spec2Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec2Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<MultiSlitModel from f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_s2d.fits>,). INFO stpipe.Spec2Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:112 Input is a MultiSlitModel DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 1 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 575 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 575 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1335 Target spectrum is at 9.30 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1335 Target spectrum is at 9.30 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 7.00 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 7.00 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3988 Computed source offset=2.30, source location=9.30 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3988 Computed source offset=2.30, source location=9.30 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1654 Applying position offset of 2.30 to ystart and ystop INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1654 Applying position offset of 2.30 to ystart and ystop DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 2.300466345080089 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 2.300466345080089 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[5.300466345080089], [13.300466345080089]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[5.300466345080089], [13.300466345080089]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1151, ystart=5.800466345080089, ystop=12.800466345080089 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1151, ystart=5.800466345080089, ystop=12.800466345080089 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 2 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1350, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1350, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 3 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 3 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 688 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 688 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1335 Target spectrum is at 9.61 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1335 Target spectrum is at 9.61 in the cross-dispersion direction DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 7.00 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1339 and the nominal XD location of the spectrum is 7.00 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3988 Computed source offset=2.61, source location=9.61 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3988 Computed source offset=2.61, source location=9.61 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1654 Applying position offset of 2.61 to ystart and ystop INFO stpipe.Spec2Pipeline.extract_1d:extract.py:1654 Applying position offset of 2.61 to ystart and ystop DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 2.6087331446274113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 2.6087331446274113 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[5.608733144627411], [13.608733144627411]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[5.608733144627411], [13.608733144627411]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1377, ystart=6.108733144627411, ystop=13.108733144627411 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1377, ystart=6.108733144627411, ystop=13.108733144627411 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:3078 Applying Aperture correction. INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 4 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1173, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1173, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2912 Working on slit 10 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec2Pipeline.extract_1d:extract.py:2930 Setting use_source_posn to False for source type EXTENDED DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[3.0], [11.0]] INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1432, ystart=3.5, ystop=10.5 INFO stpipe.Spec2Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1432, ystart=3.5, ystop=10.5 DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec2Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec2Pipeline.extract_1d:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits INFO stpipe.Spec2Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec2Pipeline:calwebb_spec2.py:291 Finished processing product /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec2_rtdata_module0/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod INFO stpipe.Spec2Pipeline:calwebb_spec2.py:134 Ending calwebb_spec2 INFO stpipe.Spec2Pipeline:step.py:928 Saved model in f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_cal.fits INFO stpipe.Spec2Pipeline:step.py:470 Step Spec2Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits HTTP/1.1" 200 84110400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits HTTP/1.1" 200 84110400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits HTTP/1.1" 200 84110400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_assign_wcs.fits HTTP/1.1" 200 84110400 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[msa_flagging] | 1.40 | |
|
-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits HTTP/1.1" 200 84110400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits HTTP/1.1" 200 84110400 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits HTTP/1.1" 200 84110400 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_msa_flagging.fits HTTP/1.1" 200 84110400 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2.py::test_nirspec_mos_spec2[x1d] | 0.25 | |
|
-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits HTTP/1.1" 200 1117440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits HTTP/1.1" 200 1117440 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits HTTP/1.1" 200 1117440 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/f170lp-g235m_mos_observation-6-c0e0_001_dn_nrs1_mod_x1d.fits HTTP/1.1" 200 1117440 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_flat_field_step_user_supplied_flat | 8.68 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:32:39,095 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:32:39,390 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits',). 2021-08-21 06:32:39,391 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits', 'inverse': False} 2021-08-21 06:32:41,223 - stpipe.FlatFieldStep - INFO - User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits given. Ignoring all flat reference files and flat creation. 2021-08-21 06:32:43,662 - stpipe.FlatFieldStep - INFO - Working on slit 1 2021-08-21 06:32:43,666 - stpipe.FlatFieldStep - INFO - Working on slit 2 2021-08-21 06:32:43,670 - stpipe.FlatFieldStep - INFO - Working on slit 3 2021-08-21 06:32:43,674 - stpipe.FlatFieldStep - INFO - Working on slit 4 2021-08-21 06:32:43,678 - stpipe.FlatFieldStep - INFO - Working on slit 10 2021-08-21 06:32:43,685 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_flat.fits HTTP/1.1" 200 3329280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_flat.fits HTTP/1.1" 200 3329280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_flat.fits HTTP/1.1" 200 3329280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_flat.fits HTTP/1.1" 200 3329280 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits',). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC INFO stpipe.FlatFieldStep:flat_field_step.py:94 User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp2/usf_flat.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 10 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 10 INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5650560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5650560 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5650560 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec2/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 5650560 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_ff_inv | 68.41 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:32:47,351 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:32:47,632 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:32:47,633 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} 2021-08-21 06:32:55,277 - stpipe.FlatFieldStep - INFO - Working on slit 1 2021-08-21 06:32:59,774 - stpipe.FlatFieldStep - INFO - Working on slit 2 2021-08-21 06:33:05,369 - stpipe.FlatFieldStep - INFO - Working on slit 3 2021-08-21 06:33:11,123 - stpipe.FlatFieldStep - INFO - Working on slit 4 2021-08-21 06:33:15,723 - stpipe.FlatFieldStep - INFO - Working on slit 10 2021-08-21 06:33:21,537 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done 2021-08-21 06:33:21,556 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:33:22,089 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:33:22,091 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} 2021-08-21 06:33:29,140 - stpipe.FlatFieldStep - INFO - Working on slit 1 2021-08-21 06:33:33,550 - stpipe.FlatFieldStep - INFO - Working on slit 2 2021-08-21 06:33:38,701 - stpipe.FlatFieldStep - INFO - Working on slit 3 2021-08-21 06:33:43,808 - stpipe.FlatFieldStep - INFO - Working on slit 4 2021-08-21 06:33:48,198 - stpipe.FlatFieldStep - INFO - Working on slit 10 2021-08-21 06:33:53,772 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_ff_inv2/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_ff_inv2/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 1 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 2 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 3 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 4 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 10 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 10 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': True} DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is MultiSlitModel of exposure type NRS_MSASPEC DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field_step.py:199 No reference found for type FLAT DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using FFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_fflat_0011.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using SFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_sflat_0013.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.FlatFieldStep:flat_field_step.py:197 Using DFLAT reference file: /grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 1 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 1 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 13831 out of 31104 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 2 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 2 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18882 out of 39179 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 12 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 3 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 3 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 19253 out of 39962 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 30 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 4 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 4 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 14066 out of 31698 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 21 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 10 INFO stpipe.FlatFieldStep:flat_field.py:355 Working on slit 10 DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1968 Wavelengths are from the wavelength array. DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1988 Number of NaNs in sci wavelength array = 18468 out of 40124 DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:1228 The table wavelength or flat-field data array contained 3139 zero or negative values; these have been skipped. DEBUG stpipe.FlatFieldStep:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:flat_field.py:2008 77 flat-field values <= 0 DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_pathloss_corrpars | 3.96 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:33:55,675 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2021-08-21 06:33:55,814 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:33:55,815 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:33:55,841 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:33:55,878 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:33:56,768 - stpipe.PathLossStep - INFO - Working on slit 0 2021-08-21 06:33:56,768 - stpipe.PathLossStep - WARNING - Source is outside slit. 2021-08-21 06:33:56,768 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2021-08-21 06:33:56,768 - stpipe.PathLossStep - INFO - Working on slit 1 2021-08-21 06:33:56,785 - stpipe.PathLossStep - INFO - Working on slit 2 2021-08-21 06:33:56,802 - stpipe.PathLossStep - INFO - Working on slit 3 2021-08-21 06:33:56,819 - stpipe.PathLossStep - INFO - Working on slit 4 2021-08-21 06:33:56,837 - stpipe.PathLossStep - INFO - Step PathLossStep done 2021-08-21 06:33:57,012 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:33:57,013 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:33:57,020 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:33:57,727 - stpipe.PathLossStep - INFO - Working on slit 0 2021-08-21 06:33:57,727 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2021-08-21 06:33:57,727 - stpipe.PathLossStep - INFO - Working on slit 1 2021-08-21 06:33:57,731 - stpipe.PathLossStep - INFO - Working on slit 2 2021-08-21 06:33:57,735 - stpipe.PathLossStep - INFO - Working on slit 3 2021-08-21 06:33:57,739 - stpipe.PathLossStep - INFO - Working on slit 4 2021-08-21 06:33:57,744 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_corrpars1/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_corrpars1/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PathLossStep:step.py:321 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_pathloss_inverse | 4.56 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:33:59,870 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2021-08-21 06:34:00,037 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:00,038 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:34:00,063 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:34:00,100 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:34:00,979 - stpipe.PathLossStep - INFO - Working on slit 0 2021-08-21 06:34:00,979 - stpipe.PathLossStep - WARNING - Source is outside slit. 2021-08-21 06:34:00,979 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2021-08-21 06:34:00,980 - stpipe.PathLossStep - INFO - Working on slit 1 2021-08-21 06:34:00,996 - stpipe.PathLossStep - INFO - Working on slit 2 2021-08-21 06:34:01,012 - stpipe.PathLossStep - INFO - Working on slit 3 2021-08-21 06:34:01,028 - stpipe.PathLossStep - INFO - Working on slit 4 2021-08-21 06:34:01,045 - stpipe.PathLossStep - INFO - Step PathLossStep done 2021-08-21 06:34:01,217 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:01,218 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2021-08-21 06:34:01,244 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:34:01,281 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:34:02,246 - stpipe.PathLossStep - INFO - Working on slit 0 2021-08-21 06:34:02,246 - stpipe.PathLossStep - WARNING - Source is outside slit. 2021-08-21 06:34:02,246 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2021-08-21 06:34:02,246 - stpipe.PathLossStep - INFO - Working on slit 1 2021-08-21 06:34:02,263 - stpipe.PathLossStep - INFO - Working on slit 2 2021-08-21 06:34:02,281 - stpipe.PathLossStep - INFO - Working on slit 3 2021-08-21 06:34:02,297 - stpipe.PathLossStep - INFO - Working on slit 4 2021-08-21 06:34:02,315 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_inverse1/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_inverse1/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PathLossStep:step.py:321 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'pathlossstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_pathloss_source_type | 3.46 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:34:04,216 - stpipe.PathLossStep - INFO - PathLossStep instance created. 2021-08-21 06:34:04,509 - stpipe.PathLossStep - INFO - Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:04,510 - stpipe.PathLossStep - INFO - Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} 2021-08-21 06:34:04,537 - stpipe.PathLossStep - INFO - Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits 2021-08-21 06:34:04,576 - stpipe.PathLossStep - INFO - Input exposure type is NRS_MSASPEC 2021-08-21 06:34:05,710 - stpipe.PathLossStep - INFO - Working on slit 0 2021-08-21 06:34:05,710 - stpipe.PathLossStep - WARNING - Source is outside slit. 2021-08-21 06:34:05,710 - stpipe.PathLossStep - WARNING - No correction provided for slit 0. Skipping 2021-08-21 06:34:05,710 - stpipe.PathLossStep - INFO - Working on slit 1 2021-08-21 06:34:05,729 - stpipe.PathLossStep - INFO - Working on slit 2 2021-08-21 06:34:05,746 - stpipe.PathLossStep - INFO - Working on slit 3 2021-08-21 06:34:05,764 - stpipe.PathLossStep - INFO - Working on slit 4 2021-08-21 06:34:05,782 - stpipe.PathLossStep - INFO - Step PathLossStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_source_type1/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_pathloss_source_type1/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PathLossStep:step.py:321 PathLossStep instance created. INFO stpipe.PathLossStep:step.py:367 Step PathLossStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PathLossStep:step.py:371 Step PathLossStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss_step.py:36 Using PATHLOSS reference file /grp/crds/cache/references/jwst/jwst_nirspec_pathloss_0002.fits DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PathLossStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC INFO stpipe.PathLossStep:pathloss.py:204 Input exposure type is NRS_MSASPEC DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 0 WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:683 Source is outside slit. WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping WARNING stpipe.PathLossStep:pathloss.py:368 No correction provided for slit 0. Skipping INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 1 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 2 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 3 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 INFO stpipe.PathLossStep:pathloss.py:358 Working on slit 4 DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PathLossStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PathLossStep:step.py:470 Step PathLossStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_barshadow_corrpars | 4.28 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:34:07,397 - stpipe.BarShadowStep - INFO - BarShadowStep instance created. 2021-08-21 06:34:07,539 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:07,540 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:34:07,568 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:34:08,509 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2021-08-21 06:34:08,518 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2021-08-21 06:34:08,522 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2021-08-21 06:34:08,728 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2021-08-21 06:34:08,738 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2021-08-21 06:34:08,741 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2021-08-21 06:34:08,912 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2021-08-21 06:34:09,124 - stpipe.BarShadowStep - INFO - Step BarShadowStep done 2021-08-21 06:34:09,310 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:09,311 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:34:10,051 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2021-08-21 06:34:10,054 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2021-08-21 06:34:10,058 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2021-08-21 06:34:10,061 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2021-08-21 06:34:10,065 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2021-08-21 06:34:10,069 - stpipe.BarShadowStep - INFO - Step BarShadowStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_barshadow_corrpars0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_barshadow_corrpars0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.BarShadowStep:step.py:321 BarShadowStep instance created. INFO stpipe.BarShadowStep:step.py:367 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:371 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:step.py:470 Step BarShadowStep done INFO stpipe.BarShadowStep:step.py:367 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:371 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:step.py:470 Step BarShadowStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_barshadow_inverse | 5.26 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:34:11,881 - stpipe.BarShadowStep - INFO - BarShadowStep instance created. 2021-08-21 06:34:12,019 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:12,020 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:34:12,043 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:34:12,973 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2021-08-21 06:34:12,982 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2021-08-21 06:34:12,985 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2021-08-21 06:34:13,178 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2021-08-21 06:34:13,188 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2021-08-21 06:34:13,192 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2021-08-21 06:34:13,355 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2021-08-21 06:34:13,558 - stpipe.BarShadowStep - INFO - Step BarShadowStep done 2021-08-21 06:34:13,738 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:13,739 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2021-08-21 06:34:13,763 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:34:14,538 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2021-08-21 06:34:14,547 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 1 (source not uniform) 2021-08-21 06:34:14,550 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2021-08-21 06:34:14,956 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2021-08-21 06:34:14,966 - stpipe.BarShadowStep - INFO - Bar shadow correction skipped for slitlet 3 (source not uniform) 2021-08-21 06:34:14,969 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2021-08-21 06:34:15,132 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2021-08-21 06:34:15,334 - stpipe.BarShadowStep - INFO - Step BarShadowStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_barshadow_inverse0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_barshadow_inverse0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.BarShadowStep:step.py:321 BarShadowStep instance created. INFO stpipe.BarShadowStep:step.py:367 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:371 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:step.py:470 Step BarShadowStep done INFO stpipe.BarShadowStep:step.py:367 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:371 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'barshadowstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 1 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:158 Bar shadow correction skipped for slitlet 3 (source not uniform) INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:step.py:470 Step BarShadowStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_barshadow_source_type | 3.61 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:34:16,946 - stpipe.BarShadowStep - INFO - BarShadowStep instance created. 2021-08-21 06:34:17,084 - stpipe.BarShadowStep - INFO - Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:17,085 - stpipe.BarShadowStep - INFO - Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} 2021-08-21 06:34:17,109 - stpipe.BarShadowStep - INFO - Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits 2021-08-21 06:34:18,025 - stpipe.BarShadowStep - INFO - Working on slitlet 1 2021-08-21 06:34:18,185 - stpipe.BarShadowStep - INFO - Working on slitlet 2 2021-08-21 06:34:18,379 - stpipe.BarShadowStep - INFO - Working on slitlet 3 2021-08-21 06:34:18,579 - stpipe.BarShadowStep - INFO - Working on slitlet 4 2021-08-21 06:34:18,745 - stpipe.BarShadowStep - INFO - Working on slitlet 10 2021-08-21 06:34:18,947 - stpipe.BarShadowStep - INFO - Step BarShadowStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_barshadow_source_type0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_barshadow_source_type0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.BarShadowStep:step.py:321 BarShadowStep instance created. INFO stpipe.BarShadowStep:step.py:367 Step BarShadowStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.BarShadowStep:step.py:371 Step BarShadowStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': 'extended'} DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:barshadow_step.py:56 Using BARSHADOW reference file /grp/crds/cache/references/jwst/jwst_nirspec_barshadow_0001.fits DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:bar_shadow.py:57 EXP_TYPE = NRS_MSASPEC DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 1 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 2 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 3 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 4 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 INFO stpipe.BarShadowStep:bar_shadow.py:66 Working on slitlet 10 DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.BarShadowStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.BarShadowStep:step.py:470 Step BarShadowStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_photom_corrpars | 4.61 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:34:20,804 - stpipe.PhotomStep - INFO - PhotomStep instance created. 2021-08-21 06:34:21,089 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:21,090 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:34:21,139 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:34:21,139 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:34:22,258 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2021-08-21 06:34:22,258 - stpipe.PhotomStep - INFO - detector: NRS1 2021-08-21 06:34:22,258 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:34:22,258 - stpipe.PhotomStep - INFO - filter: F170LP 2021-08-21 06:34:22,258 - stpipe.PhotomStep - INFO - grating: G235M 2021-08-21 06:34:22,322 - stpipe.PhotomStep - INFO - Working on slit 1 2021-08-21 06:34:22,322 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:22,328 - stpipe.PhotomStep - INFO - Working on slit 2 2021-08-21 06:34:22,328 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:22,335 - stpipe.PhotomStep - INFO - Working on slit 3 2021-08-21 06:34:22,335 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:22,341 - stpipe.PhotomStep - INFO - Working on slit 4 2021-08-21 06:34:22,342 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:22,350 - stpipe.PhotomStep - INFO - Working on slit 10 2021-08-21 06:34:22,350 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:22,358 - stpipe.PhotomStep - INFO - Step PhotomStep done 2021-08-21 06:34:22,712 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:22,713 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:34:22,725 - stpipe.PhotomStep - INFO - Using previously specified correction parameters. 2021-08-21 06:34:22,725 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:34:22,725 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:34:23,474 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2021-08-21 06:34:23,474 - stpipe.PhotomStep - INFO - detector: NRS1 2021-08-21 06:34:23,474 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:34:23,474 - stpipe.PhotomStep - INFO - filter: F170LP 2021-08-21 06:34:23,474 - stpipe.PhotomStep - INFO - grating: G235M 2021-08-21 06:34:23,531 - stpipe.PhotomStep - INFO - Working on slit 1 2021-08-21 06:34:23,531 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:23,537 - stpipe.PhotomStep - INFO - Working on slit 2 2021-08-21 06:34:23,537 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:23,544 - stpipe.PhotomStep - INFO - Working on slit 3 2021-08-21 06:34:23,544 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:23,549 - stpipe.PhotomStep - INFO - Working on slit 4 2021-08-21 06:34:23,550 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:23,555 - stpipe.PhotomStep - INFO - Working on slit 10 2021-08-21 06:34:23,555 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:23,562 - stpipe.PhotomStep - INFO - Step PhotomStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_photom_corrpars0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_photom_corrpars0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PhotomStep:step.py:321 PhotomStep instance created. INFO stpipe.PhotomStep:step.py:367 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:371 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PhotomStep:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:149 grating: G235M INFO stpipe.PhotomStep:photom.py:149 grating: G235M DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:step.py:470 Step PhotomStep done INFO stpipe.PhotomStep:step.py:367 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:371 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:photom_step.py:33 Input is MultiSlitModel INFO stpipe.PhotomStep:photom_step.py:43 Using previously specified correction parameters. INFO stpipe.PhotomStep:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:149 grating: G235M INFO stpipe.PhotomStep:photom.py:149 grating: G235M DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:step.py:470 Step PhotomStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec2_steps.py::test_photom_inverse | 5.28 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:34:25,669 - stpipe.PhotomStep - INFO - PhotomStep instance created. 2021-08-21 06:34:25,945 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:25,946 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} 2021-08-21 06:34:25,990 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:34:25,990 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:34:27,091 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2021-08-21 06:34:27,091 - stpipe.PhotomStep - INFO - detector: NRS1 2021-08-21 06:34:27,091 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:34:27,091 - stpipe.PhotomStep - INFO - filter: F170LP 2021-08-21 06:34:27,091 - stpipe.PhotomStep - INFO - grating: G235M 2021-08-21 06:34:27,149 - stpipe.PhotomStep - INFO - Working on slit 1 2021-08-21 06:34:27,149 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:27,154 - stpipe.PhotomStep - INFO - Working on slit 2 2021-08-21 06:34:27,155 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:27,160 - stpipe.PhotomStep - INFO - Working on slit 3 2021-08-21 06:34:27,161 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:27,166 - stpipe.PhotomStep - INFO - Working on slit 4 2021-08-21 06:34:27,167 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:27,173 - stpipe.PhotomStep - INFO - Working on slit 10 2021-08-21 06:34:27,174 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:27,182 - stpipe.PhotomStep - INFO - Step PhotomStep done 2021-08-21 06:34:27,530 - stpipe.PhotomStep - INFO - Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). 2021-08-21 06:34:27,531 - stpipe.PhotomStep - INFO - Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} 2021-08-21 06:34:27,575 - stpipe.PhotomStep - INFO - Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits 2021-08-21 06:34:27,575 - stpipe.PhotomStep - INFO - Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits 2021-08-21 06:34:28,764 - stpipe.PhotomStep - INFO - Using instrument: NIRSPEC 2021-08-21 06:34:28,764 - stpipe.PhotomStep - INFO - detector: NRS1 2021-08-21 06:34:28,764 - stpipe.PhotomStep - INFO - exp_type: NRS_MSASPEC 2021-08-21 06:34:28,764 - stpipe.PhotomStep - INFO - filter: F170LP 2021-08-21 06:34:28,764 - stpipe.PhotomStep - INFO - grating: G235M 2021-08-21 06:34:28,820 - stpipe.PhotomStep - INFO - Working on slit 1 2021-08-21 06:34:28,820 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:28,826 - stpipe.PhotomStep - INFO - Working on slit 2 2021-08-21 06:34:28,826 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:28,833 - stpipe.PhotomStep - INFO - Working on slit 3 2021-08-21 06:34:28,833 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:28,839 - stpipe.PhotomStep - INFO - Working on slit 4 2021-08-21 06:34:28,839 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:28,844 - stpipe.PhotomStep - INFO - Working on slit 10 2021-08-21 06:34:28,845 - stpipe.PhotomStep - INFO - PHOTMJSR value: 1 2021-08-21 06:34:28,852 - stpipe.PhotomStep - INFO - Step PhotomStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/usf_wavecorr.fits HTTP/1.1" 200 4878720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_photom_inverse0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_photom_inverse0/usf_wavecorr.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PhotomStep:step.py:321 PhotomStep instance created. INFO stpipe.PhotomStep:step.py:367 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:371 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None} DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PhotomStep:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:149 grating: G235M INFO stpipe.PhotomStep:photom.py:149 grating: G235M DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:step.py:470 Step PhotomStep done INFO stpipe.PhotomStep:step.py:367 Step PhotomStep running with args (<MultiSlitModel from usf_wavecorr.fits>,). INFO stpipe.PhotomStep:step.py:371 Step PhotomStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'photomstep', 'search_output_file': True, 'input_dir': '', 'inverse': True, 'source_type': None} DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:photom_step.py:33 Input is MultiSlitModel DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PhotomStep:photom_step.py:52 Using photom reference file: /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits INFO stpipe.PhotomStep:photom_step.py:53 Using area reference file: /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:141 Using instrument: NIRSPEC INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:142 detector: NRS1 INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:143 exp_type: NRS_MSASPEC INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:145 filter: F170LP INFO stpipe.PhotomStep:photom.py:149 grating: G235M INFO stpipe.PhotomStep:photom.py:149 grating: G235M DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_photom_0015.fits as <class 'jwst.datamodels.photom.NrsMosPhotomModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:193 Opening /grp/crds/cache/references/jwst/jwst_nirspec_area_0017.fits as <class 'jwst.datamodels.pixelarea.NirspecMosAreaModel'> DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.PhotomStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:247 Working on slit 2 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:247 Working on slit 3 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:247 Working on slit 4 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:247 Working on slit 10 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:photom.py:714 PHOTMJSR value: 1 INFO stpipe.PhotomStep:step.py:470 Step PhotomStep done | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-cal] | 94.69 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:34:44,646 - stpipe.Spec3Pipeline - INFO - Spec3Pipeline instance created. 2021-08-21 06:34:44,647 - stpipe.Spec3Pipeline.assign_mtwcs - INFO - AssignMTWcsStep instance created. 2021-08-21 06:34:44,647 - stpipe.Spec3Pipeline.master_background - INFO - MasterBackgroundStep instance created. 2021-08-21 06:34:44,648 - stpipe.Spec3Pipeline.mrs_imatch - INFO - MRSIMatchStep instance created. 2021-08-21 06:34:44,649 - stpipe.Spec3Pipeline.outlier_detection - INFO - OutlierDetectionStep instance created. 2021-08-21 06:34:44,650 - stpipe.Spec3Pipeline.resample_spec - INFO - ResampleSpecStep instance created. 2021-08-21 06:34:44,652 - stpipe.Spec3Pipeline.cube_build - INFO - CubeBuildStep instance created. 2021-08-21 06:34:44,653 - stpipe.Spec3Pipeline.extract_1d - INFO - Extract1dStep instance created. 2021-08-21 06:34:44,653 - stpipe.Spec3Pipeline.combine_1d - INFO - Combine1dStep instance created. 2021-08-21 06:34:44,654 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:34:44,654 - stpipe - INFO - OS: Linux 2021-08-21 06:34:44,993 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_20191210t193826_spec3_001_asn.json',). 2021-08-21 06:34:45,000 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} 2021-08-21 06:34:46,108 - stpipe.Spec3Pipeline - INFO - Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs2_cal.fits' reftypes = ['apcorr', 'cubepar', 'drizpars', 'extract1d', 'resol'] 2021-08-21 06:34:46,120 - stpipe.Spec3Pipeline - INFO - Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. 2021-08-21 06:34:46,122 - stpipe.Spec3Pipeline - INFO - Prefetch for CUBEPAR reference file is 'N/A'. 2021-08-21 06:34:46,122 - stpipe.Spec3Pipeline - INFO - Prefetch for DRIZPARS reference file is 'N/A'. 2021-08-21 06:34:46,122 - stpipe.Spec3Pipeline - INFO - Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. 2021-08-21 06:34:46,125 - stpipe.Spec3Pipeline - INFO - Prefetch for RESOL reference file is 'N/A'. 2021-08-21 06:34:46,126 - stpipe.Spec3Pipeline - INFO - Starting calwebb_spec3 ... 2021-08-21 06:34:56,877 - stpipe.Spec3Pipeline - INFO - Convert from exposure-based to source-based data. 2021-08-21 06:34:56,877 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00001_nrs2_cal.fits 2021-08-21 06:34:57,206 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits 2021-08-21 06:34:57,635 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00002_nrs2_cal.fits 2021-08-21 06:34:58,147 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00002_nrs1_cal.fits 2021-08-21 06:34:58,391 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00003_nrs1_cal.fits 2021-08-21 06:34:58,648 - stpipe.Spec3Pipeline - INFO - Reorganizing data from exposure jw00626030001_02103_00003_nrs2_cal.fits 2021-08-21 06:35:00,863 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits 2021-08-21 06:35:01,294 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:35:01,296 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:35:01,299 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 6 inputs 2021-08-21 06:35:01,892 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:01,925 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:02,005 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:02,041 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:02,097 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:02,144 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:02,177 - stpipe.Spec3Pipeline.outlier_detection - INFO - Generating median from 3 images 2021-08-21 06:35:02,206 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2021-08-21 06:35:02,458 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1072) <-- (26, 1299) 2021-08-21 06:35:02,704 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 227) <-- (26, 1299) 2021-08-21 06:35:02,961 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1072) <-- (26, 1299) 2021-08-21 06:35:03,220 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 227) <-- (26, 1299) 2021-08-21 06:35:03,475 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 227) <-- (26, 1299) 2021-08-21 06:35:03,748 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1072) <-- (26, 1299) 2021-08-21 06:35:07,466 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits 2021-08-21 06:35:07,467 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:35:07,810 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:35:07,812 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:35:07,924 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:35:07,925 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:35:07,925 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:35:07,926 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:35:07,926 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:35:07,926 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:35:08,432 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:35:09,186 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:35:09,232 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,267 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,314 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,353 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,383 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,435 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,443 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:35:09,489 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,525 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,571 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,608 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,636 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,684 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,697 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:35:09,743 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,777 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,823 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,858 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,885 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:09,931 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:09,942 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:35:09,989 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:10,022 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:10,070 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:10,103 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:10,129 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 227) --> (26, 1299) 2021-08-21 06:35:10,175 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1072) --> (26, 1299) 2021-08-21 06:35:10,213 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.773043752 -66.832110530 98.774899608 -66.832110530 98.774899608 -66.831946858 98.773043752 -66.831946858 2021-08-21 06:35:10,612 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits 2021-08-21 06:35:10,612 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:35:11,018 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(26, 1299) from jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits>,). 2021-08-21 06:35:11,019 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:35:11,092 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:35:11,130 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:35:11,169 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:35:11,169 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:35:11,185 - stpipe.Spec3Pipeline.extract_1d - WARNING - WCS implies the target is at 1844055.23, which is outside the bounding box, 2021-08-21 06:35:11,185 - stpipe.Spec3Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:35:11,186 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:35:11,186 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=1298, ystart=9.0, ystop=16.0 2021-08-21 06:35:11,395 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:35:13,528 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits 2021-08-21 06:35:13,529 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:35:14,918 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits 2021-08-21 06:35:15,295 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:35:15,296 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:35:15,299 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 6 inputs 2021-08-21 06:35:15,842 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:15,875 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:15,952 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:15,987 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:16,043 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:16,085 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:16,118 - stpipe.Spec3Pipeline.outlier_detection - INFO - Generating median from 3 images 2021-08-21 06:35:16,156 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2021-08-21 06:35:16,399 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 1022) <-- (26, 1295) 2021-08-21 06:35:16,628 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 271) <-- (26, 1295) 2021-08-21 06:35:16,868 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 1022) <-- (26, 1295) 2021-08-21 06:35:17,107 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 271) <-- (26, 1295) 2021-08-21 06:35:17,336 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 271) <-- (26, 1295) 2021-08-21 06:35:17,582 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (25, 1022) <-- (26, 1295) 2021-08-21 06:35:21,157 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits 2021-08-21 06:35:21,157 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:35:21,496 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:35:21,497 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:35:21,607 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:35:21,608 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:35:21,608 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:35:21,608 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:35:21,608 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:35:21,608 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:35:22,082 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:35:22,824 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:35:22,865 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:22,899 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:22,941 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:22,974 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,001 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,042 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,049 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:35:23,088 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,120 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,164 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,195 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,221 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,261 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,268 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:35:23,312 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,342 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,384 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,416 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,442 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,483 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,490 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:35:23,532 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,562 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,607 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,636 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,662 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 271) --> (26, 1295) 2021-08-21 06:35:23,705 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (25, 1022) --> (26, 1295) 2021-08-21 06:35:23,733 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.861333409 -66.839971750 98.863133948 -66.839971750 98.863133948 -66.839813587 98.861333409 -66.839813587 2021-08-21 06:35:24,130 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits 2021-08-21 06:35:24,130 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:35:24,505 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(26, 1295) from jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits>,). 2021-08-21 06:35:24,507 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:35:24,583 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:35:24,620 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:35:24,661 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:35:24,661 - stpipe.Spec3Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:35:24,661 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:35:24,675 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:35:24,675 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=1294, ystart=9.0, ystop=16.0 2021-08-21 06:35:24,978 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits 2021-08-21 06:35:24,978 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:35:26,319 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits 2021-08-21 06:35:26,695 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:35:26,696 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:35:26,699 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 6 inputs 2021-08-21 06:35:27,227 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:27,283 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:27,378 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:27,448 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:27,562 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:27,593 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:27,620 - stpipe.Spec3Pipeline.outlier_detection - INFO - Generating median from 3 images 2021-08-21 06:35:27,657 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2021-08-21 06:35:27,879 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 155) <-- (26, 1295) 2021-08-21 06:35:28,165 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1139) <-- (26, 1295) 2021-08-21 06:35:28,423 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 155) <-- (26, 1295) 2021-08-21 06:35:28,662 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1139) <-- (26, 1295) 2021-08-21 06:35:28,899 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 1139) <-- (26, 1295) 2021-08-21 06:35:29,117 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (27, 155) <-- (26, 1295) 2021-08-21 06:35:32,506 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits 2021-08-21 06:35:32,506 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:35:32,829 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:35:32,830 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:35:32,934 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:35:32,935 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:35:32,935 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:35:32,935 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:35:32,935 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:35:32,935 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:35:33,409 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:35:34,127 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:35:34,150 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,231 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,295 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,378 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,488 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,545 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,546 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:35:34,567 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,622 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,655 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,700 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,752 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,780 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,784 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:35:34,806 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,850 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,880 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:34,925 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:34,977 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:35,006 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:35,010 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:35:35,032 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:35,076 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:35,108 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:35,151 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:35,202 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 1139) --> (26, 1295) 2021-08-21 06:35:35,233 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (27, 155) --> (26, 1295) 2021-08-21 06:35:35,257 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.793051975 -66.806942846 98.794900812 -66.806942846 98.794900812 -66.806774273 98.793051975 -66.806774273 2021-08-21 06:35:35,647 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits 2021-08-21 06:35:35,647 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:35:36,011 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(26, 1295) from jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits>,). 2021-08-21 06:35:36,012 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:35:36,081 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:35:36,117 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:35:36,155 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:35:36,155 - stpipe.Spec3Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:35:36,155 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:35:36,169 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:35:36,169 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=1294, ystart=9.0, ystop=16.0 2021-08-21 06:35:36,459 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits 2021-08-21 06:35:36,459 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:35:37,112 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits 2021-08-21 06:35:37,462 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:35:37,463 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:35:37,466 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 3 inputs 2021-08-21 06:35:37,953 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:38,047 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:38,140 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:38,176 - stpipe.Spec3Pipeline.outlier_detection - INFO - Generating median from 3 images 2021-08-21 06:35:38,194 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2021-08-21 06:35:38,442 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (29, 1338) <-- (26, 1340) 2021-08-21 06:35:38,694 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (29, 1338) <-- (26, 1340) 2021-08-21 06:35:38,947 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (29, 1338) <-- (26, 1340) 2021-08-21 06:35:40,622 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits 2021-08-21 06:35:40,622 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:35:40,959 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:35:40,961 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:35:41,063 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:35:41,064 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:35:41,064 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:35:41,064 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:35:41,064 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:35:41,065 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:35:41,508 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:35:42,203 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:35:42,253 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,314 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,376 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,386 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:35:42,434 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,493 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,550 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,561 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:35:42,610 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,670 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,727 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,739 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:35:42,788 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,847 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,904 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (29, 1338) --> (26, 1340) 2021-08-21 06:35:42,935 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.813060000 -66.803165377 98.814896835 -66.803165377 98.814896835 -66.802997089 98.813060000 -66.802997089 2021-08-21 06:35:43,322 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits 2021-08-21 06:35:43,323 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:35:43,673 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(26, 1340) from jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits>,). 2021-08-21 06:35:43,674 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:35:43,743 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:35:43,778 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:35:43,816 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:35:43,816 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:35:43,832 - stpipe.Spec3Pipeline.extract_1d - WARNING - WCS implies the target is at 1861885.11, which is outside the bounding box, 2021-08-21 06:35:43,832 - stpipe.Spec3Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:35:43,832 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:35:43,832 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=1339, ystart=9.0, ystop=16.0 2021-08-21 06:35:44,048 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:35:46,199 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits 2021-08-21 06:35:46,199 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:35:46,858 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits 2021-08-21 06:35:47,257 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:35:47,258 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:35:47,261 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 3 inputs 2021-08-21 06:35:47,533 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (18, 1331) --> (21, 1334) 2021-08-21 06:35:47,601 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:47,669 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:47,693 - stpipe.Spec3Pipeline.outlier_detection - INFO - Generating median from 3 images 2021-08-21 06:35:47,699 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2021-08-21 06:35:47,928 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (18, 1331) <-- (21, 1334) 2021-08-21 06:35:48,158 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (18, 1332) <-- (21, 1334) 2021-08-21 06:35:48,388 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (18, 1332) <-- (21, 1334) 2021-08-21 06:35:50,041 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits 2021-08-21 06:35:50,042 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:35:50,371 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:35:50,372 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:35:50,476 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:35:50,477 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:35:50,477 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:35:50,477 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:35:50,477 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:35:50,477 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:35:50,715 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:35:51,408 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:35:51,443 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (21, 1334) 2021-08-21 06:35:51,481 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,520 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,522 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:35:51,555 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (21, 1334) 2021-08-21 06:35:51,595 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,633 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,636 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:35:51,670 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (21, 1334) 2021-08-21 06:35:51,710 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,748 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,751 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:35:51,785 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1331) --> (21, 1334) 2021-08-21 06:35:51,824 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,861 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (18, 1332) --> (21, 1334) 2021-08-21 06:35:51,882 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.832714858 -66.805465551 98.834174658 -66.805465551 98.834174658 -66.805332181 98.832714858 -66.805332181 2021-08-21 06:35:52,270 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits 2021-08-21 06:35:52,270 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:35:52,630 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(21, 1334) from jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits>,). 2021-08-21 06:35:52,632 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:35:52,703 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:35:52,739 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:35:52,777 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:35:52,777 - stpipe.Spec3Pipeline.extract_1d - INFO - Setting use_source_posn to False for source type EXTENDED 2021-08-21 06:35:52,777 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:35:52,788 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:35:52,788 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=1333, ystart=6.5, ystop=13.5 2021-08-21 06:35:53,089 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits 2021-08-21 06:35:53,089 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:35:53,740 - stpipe.Spec3Pipeline - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits 2021-08-21 06:35:54,089 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<SourceModelContainer>,). 2021-08-21 06:35:54,091 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} 2021-08-21 06:35:54,094 - stpipe.Spec3Pipeline.outlier_detection - INFO - Performing outlier detection on 3 inputs 2021-08-21 06:35:54,615 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:54,707 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:54,798 - stpipe.Spec3Pipeline.outlier_detection - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:54,835 - stpipe.Spec3Pipeline.outlier_detection - INFO - Generating median from 3 images 2021-08-21 06:35:54,866 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting median... 2021-08-21 06:35:55,112 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (28, 1433) <-- (26, 1435) 2021-08-21 06:35:55,366 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (28, 1433) <-- (26, 1435) 2021-08-21 06:35:55,621 - stpipe.Spec3Pipeline.outlier_detection - INFO - Blotting (28, 1433) <-- (26, 1435) 2021-08-21 06:35:57,276 - stpipe.Spec3Pipeline.outlier_detection - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits 2021-08-21 06:35:57,276 - stpipe.Spec3Pipeline.outlier_detection - INFO - Step outlier_detection done 2021-08-21 06:35:57,603 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec running with args (<SourceModelContainer>,). 2021-08-21 06:35:57,604 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} 2021-08-21 06:35:57,707 - stpipe.Spec3Pipeline.resample_spec - INFO - No NIRSpec DIRZPARS reffile 2021-08-21 06:35:57,708 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pixfrac=1.0 2021-08-21 06:35:57,708 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: kernel='square' 2021-08-21 06:35:57,708 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: fillval='INDEF' 2021-08-21 06:35:57,708 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: weight_type='ivm' 2021-08-21 06:35:57,708 - stpipe.Spec3Pipeline.resample_spec - INFO - setting: pscale_ratio=1.0 2021-08-21 06:35:58,163 - stpipe.Spec3Pipeline.resample_spec - INFO - Blending metadata for None 2021-08-21 06:35:58,856 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling science data 2021-08-21 06:35:58,908 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:58,972 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,035 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,046 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_rnoise 2021-08-21 06:35:59,095 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,160 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,223 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,235 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_poisson 2021-08-21 06:35:59,285 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,350 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,416 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,428 - stpipe.Spec3Pipeline.resample_spec - INFO - Resampling var_flat 2021-08-21 06:35:59,480 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,545 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,608 - stpipe.Spec3Pipeline.resample_spec - INFO - Drizzling (28, 1433) --> (26, 1435) 2021-08-21 06:35:59,641 - stpipe.Spec3Pipeline.resample_spec - INFO - Update S_REGION to POLYGON ICRS 98.880040664 -66.807291927 98.881836363 -66.807291927 98.881836363 -66.807128458 98.880040664 -66.807128458 2021-08-21 06:36:00,028 - stpipe.Spec3Pipeline.resample_spec - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits 2021-08-21 06:36:00,028 - stpipe.Spec3Pipeline.resample_spec - INFO - Step resample_spec done 2021-08-21 06:36:00,380 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d running with args (<SlitModel(26, 1435) from jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits>,). 2021-08-21 06:36:00,381 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} 2021-08-21 06:36:00,450 - stpipe.Spec3Pipeline.extract_1d - INFO - Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json 2021-08-21 06:36:00,484 - stpipe.Spec3Pipeline.extract_1d - INFO - Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits 2021-08-21 06:36:00,525 - stpipe.Spec3Pipeline.extract_1d - INFO - Turning on source position correction for exp_type = NRS_MSASPEC 2021-08-21 06:36:00,525 - stpipe.Spec3Pipeline.extract_1d - INFO - Processing spectral order -1 2021-08-21 06:36:00,541 - stpipe.Spec3Pipeline.extract_1d - WARNING - WCS implies the target is at 1909826.65, which is outside the bounding box, 2021-08-21 06:36:00,541 - stpipe.Spec3Pipeline.extract_1d - WARNING - so we can't get spectrum location using the WCS 2021-08-21 06:36:00,542 - stpipe.Spec3Pipeline.extract_1d - INFO - Using extraction limits: 2021-08-21 06:36:00,542 - stpipe.Spec3Pipeline.extract_1d - INFO - xstart=0, xstop=1434, ystart=9.0, ystop=16.0 2021-08-21 06:36:00,770 - stpipe.Spec3Pipeline.extract_1d - INFO - Applying Aperture correction. 2021-08-21 06:36:03,061 - stpipe.Spec3Pipeline.extract_1d - INFO - Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits 2021-08-21 06:36:03,062 - stpipe.Spec3Pipeline.extract_1d - INFO - Step extract_1d done 2021-08-21 06:36:03,062 - stpipe.Spec3Pipeline - INFO - Ending calwebb_spec3 2021-08-21 06:36:03,062 - stpipe.Spec3Pipeline - INFO - Step Spec3Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ 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stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626-o030_20191210t193826_spec3_001_asn.json HTTP/1.1" 200 3371 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626-o030_20191210t193826_spec3_001_asn.json HTTP/1.1" 200 3371 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626-o030_20191210t193826_spec3_001_asn.json HTTP/1.1" 200 3371 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626-o030_20191210t193826_spec3_001_asn.json HTTP/1.1" 200 3371 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00001_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs2_cal.fits HTTP/1.1" 200 2502720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00002_nrs1_cal.fits HTTP/1.1" 200 5912640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs1_cal.fits HTTP/1.1" 200 5688000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs1_cal.fits HTTP/1.1" 200 5688000 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs1_cal.fits HTTP/1.1" 200 5688000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs1_cal.fits HTTP/1.1" 200 5688000 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs2_cal.fits HTTP/1.1" 200 2275200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs2_cal.fits HTTP/1.1" 200 2275200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs2_cal.fits HTTP/1.1" 200 2275200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/jw00626030001_02103_00003_nrs2_cal.fits HTTP/1.1" 200 2275200 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC3PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-SPEC3PIPELINE parameters from CRDS DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:193 Opening jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:pipeline.py:182 No PARS-SPEC3PIPELINE reference files found. DEBUG stpipe:pipeline.py:182 No PARS-SPEC3PIPELINE reference files found. INFO stpipe.Spec3Pipeline:step.py:321 Spec3Pipeline instance created. INFO stpipe.Spec3Pipeline.assign_mtwcs:step.py:321 AssignMTWcsStep instance created. INFO stpipe.Spec3Pipeline.master_background:step.py:321 MasterBackgroundStep instance created. INFO stpipe.Spec3Pipeline.mrs_imatch:step.py:321 MRSIMatchStep instance created. INFO stpipe.Spec3Pipeline.outlier_detection:step.py:321 OutlierDetectionStep instance created. INFO stpipe.Spec3Pipeline.resample_spec:step.py:321 ResampleSpecStep instance created. INFO stpipe.Spec3Pipeline.cube_build:step.py:321 CubeBuildStep instance created. INFO stpipe.Spec3Pipeline.extract_1d:step.py:321 Extract1dStep instance created. INFO stpipe.Spec3Pipeline.combine_1d:step.py:321 Combine1dStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Spec3Pipeline:step.py:367 Step Spec3Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626-o030_20191210t193826_spec3_001_asn.json',). INFO stpipe.Spec3Pipeline:step.py:371 Step Spec3Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'steps': {'assign_mtwcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'assign_mtwcs', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0'}, 'master_background': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'user_background': None, 'save_background': False, 'force_subtract': False}, 'mrs_imatch': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'bkg_degree': 1, 'subtract': False}, 'outlier_detection': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'emsm', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'xdebug': None, 'ydebug': None, 'zdebug': None, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True}, 'combine_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'exptime_key': 'exposure_time'}}} DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science']: DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science']: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec3Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'jw00626030001_02103_00001_nrs2_cal.fits' reftypes = ['apcorr', 'cubepar', 'drizpars', 'extract1d', 'resol'] INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for APCORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for CUBEPAR reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for DRIZPARS reference file is 'N/A'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for EXTRACT1D reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json'. INFO stpipe.Spec3Pipeline:pipeline.py:288 Prefetch for RESOL reference file is 'N/A'. INFO stpipe.Spec3Pipeline:calwebb_spec3.py:72 Starting calwebb_spec3 ... DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science', 'background']: DEBUG stpipe.Spec3Pipeline:container.py:209 Filtering datasets based on allowed exptypes ['science', 'background']: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00001_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00002_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs1_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:container.py:215 Files accepted for processing jw00626030001_02103_00003_nrs2_cal.fits: DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00001_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00002_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00002_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00002_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00002_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00003_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00003_nrs1_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00003_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0/jw00626030001_02103_00003_nrs2_cal.fits as <class 'jwst.datamodels.multislit.MultiSlitModel'> DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Spec3Pipeline:calwebb_spec3.py:156 Convert from exposure-based to source-based data. INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00001_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00002_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs1_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs1_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 279 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 0 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 2315 INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs2_cal.fits INFO stpipe.Spec3Pipeline:exp_to_source.py:37 Reorganizing data from exposure jw00626030001_02103_00003_nrs2_cal.fits DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 443 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 482 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:exp_to_source.py:40 Copying source 227 DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:191 Performing outlier detection on 6 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:153 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 74.29679635222361 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 74.29679635222361 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 74.15763605140049 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 74.15763605140049 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 83.33333333333334 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 83.33333333333334 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1072) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1072) <-- (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1072) <-- (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 227) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 227) <-- (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 227) <-- (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1072) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1072) <-- (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1072) <-- (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 227) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 227) <-- (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 227) <-- (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 227) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 227) <-- (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 227) <-- (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1072) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1072) <-- (26, 1299) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1072) <-- (26, 1299) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 24502 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 24502 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 28944 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 28944 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 5752 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 5752 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6129 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6129 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 24502 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 24502 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 28944 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 28944 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 5752 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 5752 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6129 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6129 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 5752 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 5752 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6129 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6129 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 24502 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 24502 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 28944 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 28944 INFO stpipe.Spec3Pipeline.outlier_detection:step.py:928 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 226.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 227) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 227) --> (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1071.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1072) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1072) --> (26, 1299) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.773043752 -66.832110530 98.774899608 -66.832110530 98.774899608 -66.831946858 98.773043752 -66.831946858 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.773043752 -66.832110530 98.774899608 -66.832110530 98.774899608 -66.831946858 98.773043752 -66.831946858 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(26, 1299) from jw00626-o030_s00443_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 1844055.23, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 1844055.23, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 649 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 649 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1298, ystart=9.0, ystop=16.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1298, ystart=9.0, ystop=16.0 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw00626-o030_s00443_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:191 Performing outlier detection on 6 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:153 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 96.25482625482626 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 96.25482625482626 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 96.17166617166617 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 96.17166617166617 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 97.46955746955747 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 97.46955746955747 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 1022) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 1022) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 1022) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 271) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 271) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 271) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 1022) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 1022) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 1022) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 271) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 271) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 271) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 271) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 271) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 271) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (25, 1022) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 1022) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (25, 1022) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 21633 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 21633 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 25550 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 25550 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 6393 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 6393 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6775 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6775 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 21633 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 21633 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 25550 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 25550 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 6393 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 6393 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6775 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6775 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 6393 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 6393 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6774 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 6774 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 21633 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 21633 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 25550 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 25550 INFO stpipe.Spec3Pipeline.outlier_detection:step.py:928 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 270.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 271) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 271) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1021.5), (-0.5, 24.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (25, 1022) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (25, 1022) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.861333409 -66.839971750 98.863133948 -66.839971750 98.863133948 -66.839813587 98.861333409 -66.839813587 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.861333409 -66.839971750 98.863133948 -66.839971750 98.863133948 -66.839813587 98.861333409 -66.839813587 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(26, 1295) from jw00626-o030_s00482_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3140 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3140 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1294, ystart=9.0, ystop=16.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1294, ystart=9.0, ystop=16.0 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw00626-o030_s00482_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:191 Performing outlier detection on 6 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:153 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 93.16899316899317 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 93.16899316899317 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 93.04425304425304 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 93.04425304425304 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 95.47074547074547 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 95.47074547074547 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 155) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 155) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 155) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1139) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1139) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1139) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 155) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 155) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 155) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1139) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1139) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1139) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 1139) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1139) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 1139) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (27, 155) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 155) <-- (26, 1295) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (27, 155) <-- (26, 1295) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 29480 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 29480 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 30753 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 30753 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 29480 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 29480 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 30753 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 30753 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 29480 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 29480 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 30753 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 30753 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 4185 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 4185 INFO stpipe.Spec3Pipeline.outlier_detection:step.py:928 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1138.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 1139) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 1139) --> (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 154.5), (-0.5, 26.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (27, 155) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (27, 155) --> (26, 1295) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.793051975 -66.806942846 98.794900812 -66.806942846 98.794900812 -66.806774273 98.793051975 -66.806774273 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.793051975 -66.806942846 98.794900812 -66.806942846 98.794900812 -66.806774273 98.793051975 -66.806774273 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(26, 1295) from jw00626-o030_s00227_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3140 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3140 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1294, ystart=9.0, ystop=16.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1294, ystart=9.0, ystop=16.0 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw00626-o030_s00227_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:191 Performing outlier detection on 3 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:153 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 51.94890929965557 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 51.94890929965557 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 52.017795637198624 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 52.017795637198624 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 67.3507462686567 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 67.3507462686567 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (29, 1338) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (29, 1338) <-- (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (29, 1338) <-- (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (29, 1338) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (29, 1338) <-- (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (29, 1338) <-- (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (29, 1338) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (29, 1338) <-- (26, 1340) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (29, 1338) <-- (26, 1340) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 36632 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 36632 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 38802 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 38802 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 36632 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 36632 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 38802 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 38802 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 36632 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 36632 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 38801 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 38801 INFO stpipe.Spec3Pipeline.outlier_detection:step.py:928 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1337.5), (-0.5, 28.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (29, 1338) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (29, 1338) --> (26, 1340) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.813060000 -66.803165377 98.814896835 -66.803165377 98.814896835 -66.802997089 98.813060000 -66.802997089 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.813060000 -66.803165377 98.814896835 -66.803165377 98.814896835 -66.802997089 98.813060000 -66.802997089 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(26, 1340) from jw00626-o030_s00279_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 1861885.11, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 1861885.11, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 669 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 669 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1339, ystart=9.0, ystop=16.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1339, ystart=9.0, ystop=16.0 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw00626-o030_s00279_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:191 Performing outlier detection on 3 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:153 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 96.95152423788106 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 96.95152423788106 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 90.39051902620119 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 90.39051902620119 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: -- DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: -- INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (18, 1331) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (18, 1331) <-- (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (18, 1331) <-- (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (18, 1332) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (18, 1332) <-- (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (18, 1332) <-- (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (18, 1332) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (18, 1332) <-- (21, 1334) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (18, 1332) <-- (21, 1334) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 22884 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 22884 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 23958 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 23958 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 22860 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 22860 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 23976 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 23976 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 22392 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 22392 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 23976 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 23976 INFO stpipe.Spec3Pipeline.outlier_detection:step.py:928 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1331) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1330.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1331) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1331) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1331.5), (-0.5, 17.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (18, 1332) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (18, 1332) --> (21, 1334) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.832714858 -66.805465551 98.834174658 -66.805465551 98.834174658 -66.805332181 98.832714858 -66.805332181 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.832714858 -66.805465551 98.834174658 -66.805465551 98.834174658 -66.805332181 98.832714858 -66.805332181 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(21, 1334) from jw00626-o030_s00000_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3140 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3140 Setting use_source_posn to False for source type EXTENDED INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = False DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[6.0], [14.0]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[6.0], [14.0]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1333, ystart=6.5, ystop=13.5 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1333, ystart=6.5, ystop=13.5 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:step.py:928 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:367 Step outlier_detection running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.outlier_detection:step.py:371 Step outlier_detection parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'crf', 'search_output_file': False, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'weight_type': 'ivm', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'nlow': 0, 'nhigh': 0, 'maskpt': 0.7, 'grow': 1, 'snr': '5.0 4.0', 'scale': '1.2 0.7', 'backg': 0.0, 'save_intermediate_results': False, 'resample_data': True, 'good_bits': '~DO_NOT_USE', 'scale_detection': False, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:191 Performing outlier detection on 3 inputs DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection_step.py:153 Using OutlierDetectionSpec class for outlier_detection DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:177 Defined output product suffix as: _outlier_s2d.fits DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 76.11364245510586 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 76.11364245510586 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 75.70088448137228 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 75.70088448137228 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 83.74698472259448 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:284 Percentage of pixels with low weight: 83.74698472259448 INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:296 Generating median from 3 images DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:313 Blotting median... DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (28, 1433) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (28, 1433) <-- (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (28, 1433) <-- (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (28, 1433) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (28, 1433) <-- (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (28, 1433) <-- (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:505 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:506 Sci shape: (28, 1433) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (28, 1433) <-- (26, 1435) INFO stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:509 Blotting (28, 1433) <-- (26, 1435) DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 34905 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 34905 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 40124 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 40124 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 34905 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 34905 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 40124 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 40124 DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 34905 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:446 Pixels in input DQ: 34905 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 40122 DEBUG stpipe.Spec3Pipeline.outlier_detection:outlier_detection.py:447 Pixels in cr_mask: 40122 INFO stpipe.Spec3Pipeline.outlier_detection:step.py:928 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits INFO stpipe.Spec3Pipeline.outlier_detection:step.py:470 Step outlier_detection done INFO stpipe.Spec3Pipeline.resample_spec:step.py:367 Step resample_spec running with args (<SourceModelContainer>,). INFO stpipe.Spec3Pipeline.resample_spec:step.py:371 Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'pixel_scale_ratio': 1.0, 'single': False, 'blendheaders': True, 'allowed_memory': None} DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample_spec_step.py:57 No NIRSpec DIRZPARS reffile INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pixfrac=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: kernel='square' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: fillval='INDEF' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: weight_type='ivm' INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 INFO stpipe.Spec3Pipeline.resample_spec:resample_step.py:221 setting: pscale_ratio=1.0 DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None INFO stpipe.Spec3Pipeline.resample_spec:resample.py:103 Blending metadata for None DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.resample_spec:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data INFO stpipe.Spec3Pipeline.resample_spec:resample.py:155 Resampling science data DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:368 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:369 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:370 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:gwcs_drizzle.py:373 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_rnoise DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_poisson DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat INFO stpipe.Spec3Pipeline.resample_spec:resample.py:199 Resampling var_flat DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample_utils.py:73 Bounding box from data shape: ((-0.5, 1432.5), (-0.5, 27.5)) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:395 Pixmap shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:396 Input Sci shape: (28, 1433) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) DEBUG stpipe.Spec3Pipeline.resample_spec:resample.py:397 Output Sci shape: (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:resample.py:399 Drizzling (28, 1433) --> (26, 1435) INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.880040664 -66.807291927 98.881836363 -66.807291927 98.881836363 -66.807128458 98.880040664 -66.807128458 INFO stpipe.Spec3Pipeline.resample_spec:util.py:957 Update S_REGION to POLYGON ICRS 98.880040664 -66.807291927 98.881836363 -66.807291927 98.881836363 -66.807128458 98.880040664 -66.807128458 INFO stpipe.Spec3Pipeline.resample_spec:step.py:928 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits INFO stpipe.Spec3Pipeline.resample_spec:step.py:470 Step resample_spec done INFO stpipe.Spec3Pipeline.extract_1d:step.py:367 Step extract_1d running with args (<SlitModel(26, 1435) from jw00626-o030_s02315_nirspec_f170lp-g235m_s2d.fits>,). INFO stpipe.Spec3Pipeline.extract_1d:step.py:371 Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_spec3_run_pipeline0', 'smoothing_length': None, 'bkg_fit': 'poly', 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'apply_apcorr': True} DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:120 Input is a SlitModel DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:259 Using EXTRACT1D reference file /grp/crds/cache/references/jwst/jwst_nirspec_extract1d_0003.json DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract_1d_step.py:267 Using APCORR file /grp/crds/cache/references/jwst/jwst_nirspec_apcorr_0004.fits DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:2885 Turning on source position correction for exp_type = NRS_MSASPEC INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3337 Processing spectral order -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:439 Initial parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:440 dispaxis = 1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:441 spectral order = -1 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:442 initial xstart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:443 initial xstop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:444 initial ystart = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:445 initial ystop = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:446 extract_width = 8 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:447 initial src_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:448 initial bkg_coeff = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:449 bkg_fit = None DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:450 bkg_order = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:451 smoothing_length = 0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:452 independent_var = pixel DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:453 use_source_posn = True WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 1909826.65, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1482 WCS implies the target is at 1909826.65, which is outside the bounding box, WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS WARNING stpipe.Spec3Pipeline.extract_1d:extract.py:1483 so we can't get spectrum location using the WCS DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 717 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1324 Spectrum location from WCS used column/row 717 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1701 Updated parameters: DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1702 position_correction = 0.0 DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:1776 Converting extraction limits to [[8.5], [16.5]] INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4011 Using extraction limits: INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1434, ystart=9.0, ystop=16.0 INFO stpipe.Spec3Pipeline.extract_1d:extract.py:4024 xstart=0, xstop=1434, ystart=9.0, ystop=16.0 DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Spec3Pipeline.extract_1d:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. INFO stpipe.Spec3Pipeline.extract_1d:extract.py:3470 Applying Aperture correction. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. DEBUG stpipe.Spec3Pipeline.extract_1d:extract.py:3535 Not copying from the INT_TIMES table because this is not a TSO exposure. INFO stpipe.Spec3Pipeline.extract_1d:step.py:928 Saved model in jw00626-o030_s02315_nirspec_f170lp-g235m_x1d.fits INFO stpipe.Spec3Pipeline.extract_1d:step.py:470 Step extract_1d done INFO stpipe.Spec3Pipeline:calwebb_spec3.py:234 Ending calwebb_spec3 INFO stpipe.Spec3Pipeline:step.py:470 Step Spec3Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 3026880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 3026880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 3026880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 3026880 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-crf] | 0.38 | |
|
-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 3026880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 3026880 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 3026880 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 3026880 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00000-x1d] | 0.21 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 262080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 262080 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 262080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00000_nirspec_f170lp-g235m_x1d.fits HTTP/1.1" 200 262080 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-cal] | 0.56 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4124160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4124160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4124160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4124160 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00227-crf] | 0.45 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4124160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4124160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4124160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00227_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4124160 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00279-cal] | 0.38 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4587840 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00279_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4587840 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-cal] | 0.47 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4475520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4475520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4475520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4475520 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00443-crf] | 0.47 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4475520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4475520 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4475520 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00443_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4475520 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-cal] | 0.44 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4176000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4176000 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4176000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4176000 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s00482-crf] | 0.45 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4176000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4176000 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4176000 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s00482_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4176000 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-cal] | 0.42 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4579200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4579200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4579200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_cal.fits HTTP/1.1" 200 4579200 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_mos_spec3.py::test_nirspec_mos_spec3[s02315-crf] | 0.96 | |
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-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4579200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4579200 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4579200 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_mos_spec3/jw00626-o030_s02315_nirspec_f170lp-g235m_crf.fits HTTP/1.1" 200 4579200 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_nirspec_ifu_user_supplied_flat | 11.75 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:36:20,381 - stpipe - INFO - Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_user_supplied0/nrs_ifu_nrs1_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_user_supplied0/nrs_ifu_nrs1_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_user_supplied0/nrs_ifu_nrs1_interpolated_flat.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_user_supplied0/nrs_ifu_nrs1_interpolated_flat.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe:flat_field.py:543 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly INFO stpipe:flat_field.py:543 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/ff_using_interpolated.fits HTTP/1.1" 200 102271680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/ff_using_interpolated.fits HTTP/1.1" 200 102271680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/ff_using_interpolated.fits HTTP/1.1" 200 102271680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/ff_using_interpolated.fits HTTP/1.1" 200 102271680 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_steps_spec2.py::test_flat_field_step_user_supplied_flat | 22.46 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:36:32,866 - stpipe.FlatFieldStep - INFO - FlatFieldStep instance created. 2021-08-21 06:36:33,488 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits',). 2021-08-21 06:36:33,489 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits', 'inverse': False} 2021-08-21 06:36:38,298 - stpipe.FlatFieldStep - INFO - User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits given. Ignoring all flat reference files and flat creation. 2021-08-21 06:36:43,034 - stpipe.FlatFieldStep - INFO - Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly 2021-08-21 06:36:43,122 - stpipe.FlatFieldStep - INFO - Step FlatFieldStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_assign_wcs.fits HTTP/1.1" 200 85308480 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/nrs_ifu_nrs1_interpolated_flat.fits HTTP/1.1" 200 50382720 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.FlatFieldStep:step.py:321 FlatFieldStep instance created. INFO stpipe.FlatFieldStep:step.py:367 Step FlatFieldStep running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits',). INFO stpipe.FlatFieldStep:step.py:371 Step FlatFieldStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits', 'inverse': False} DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:flat_field_step.py:72 Input is IFUImageModel of exposure type NRS_IFU INFO stpipe.FlatFieldStep:flat_field_step.py:94 User-supplied flat /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits given. Ignoring all flat reference files and flat creation. DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.FlatFieldStep:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_flat_field_step_user_supp3/nrs_ifu_nrs1_interpolated_flat.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. DEBUG stpipe.FlatFieldStep:flat_field.py:263 Flat field correction for NIRSpec spectrographic data. INFO stpipe.FlatFieldStep:flat_field.py:543 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly INFO stpipe.FlatFieldStep:flat_field.py:543 Pre-computed flat <ImageModel(2048, 2048) from nrs_ifu_nrs1_interpolated_flat.fits> provided. Using the flat directly DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.FlatFieldStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.FlatFieldStep:step.py:470 Step FlatFieldStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 102271680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 102271680 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 102271680 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_ifu/flat_fielded_step_user_supplied.fits HTTP/1.1" 200 102271680 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_subarray.py::test_nirspec_detector1[group_scale] | 9.31 | |
|
-----------------------------Captured stderr setup------------------------------ 2021-08-21 06:36:49,043 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf 2021-08-21 06:36:49,061 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created. 2021-08-21 06:36:49,062 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created. 2021-08-21 06:36:49,063 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created. 2021-08-21 06:36:49,064 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created. 2021-08-21 06:36:49,064 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created. 2021-08-21 06:36:49,065 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created. 2021-08-21 06:36:49,066 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created. 2021-08-21 06:36:49,066 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created. 2021-08-21 06:36:49,067 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created. 2021-08-21 06:36:49,068 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created. 2021-08-21 06:36:49,068 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created. 2021-08-21 06:36:49,069 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created. 2021-08-21 06:36:49,070 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created. 2021-08-21 06:36:49,071 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created. 2021-08-21 06:36:49,072 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created. 2021-08-21 06:36:49,073 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created. 2021-08-21 06:36:49,073 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created. 2021-08-21 06:36:49,073 - stpipe - INFO - Hostname: jwcalibdev.stsci.edu 2021-08-21 06:36:49,073 - stpipe - INFO - OS: Linux 2021-08-21 06:36:49,809 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits',). 2021-08-21 06:36:49,818 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}}} 2021-08-21 06:36:49,858 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'nrs1_group_subarray.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] 2021-08-21 06:36:49,867 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits'. 2021-08-21 06:36:49,868 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits'. 2021-08-21 06:36:49,870 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits'. 2021-08-21 06:36:49,872 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits'. 2021-08-21 06:36:49,874 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'. 2021-08-21 06:36:49,874 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits'. 2021-08-21 06:36:49,876 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'. 2021-08-21 06:36:49,876 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'. 2021-08-21 06:36:49,876 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'. 2021-08-21 06:36:49,876 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits'. 2021-08-21 06:36:49,877 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits'. 2021-08-21 06:36:49,879 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'. 2021-08-21 06:36:49,879 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'. 2021-08-21 06:36:49,879 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ... 2021-08-21 06:36:50,139 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray.fits>,). 2021-08-21 06:36:50,140 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:50,174 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES=3, FRMDIVSR=4 2021-08-21 06:36:50,174 - stpipe.Detector1Pipeline.group_scale - INFO - Rescaling all groups by 4/3 2021-08-21 06:36:50,232 - stpipe.Detector1Pipeline.group_scale - INFO - Saved model in nrs1_group_subarray_group_scale.fits 2021-08-21 06:36:50,233 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done 2021-08-21 06:36:50,457 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:50,459 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:50,479 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits 2021-08-21 06:36:50,651 - stpipe.Detector1Pipeline.dq_init - INFO - Extracting mask subarray to match science data 2021-08-21 06:36:50,661 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done 2021-08-21 06:36:50,796 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:50,797 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:50,815 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits 2021-08-21 06:36:51,271 - stpipe.Detector1Pipeline.saturation - INFO - Extracting reference file subarray to match science data 2021-08-21 06:36:51,291 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4432 saturated pixels 2021-08-21 06:36:51,292 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels 2021-08-21 06:36:51,295 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done 2021-08-21 06:36:51,409 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:51,410 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:51,410 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped. 2021-08-21 06:36:51,411 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done 2021-08-21 06:36:51,516 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:51,517 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:51,535 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits 2021-08-21 06:36:52,032 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done 2021-08-21 06:36:52,139 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:52,140 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} 2021-08-21 06:36:52,150 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True 2021-08-21 06:36:52,151 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True 2021-08-21 06:36:52,151 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11 2021-08-21 06:36:52,151 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.000000 2021-08-21 06:36:52,151 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = True 2021-08-21 06:36:52,222 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done 2021-08-21 06:36:52,332 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:52,333 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:52,351 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits 2021-08-21 06:36:54,149 - stpipe.Detector1Pipeline.linearity - INFO - Extracting linearity subarray to match science data 2021-08-21 06:36:54,200 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done 2021-08-21 06:36:54,310 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:54,310 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None} 2021-08-21 06:36:54,329 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits 2021-08-21 06:36:56,022 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=2, nframes=3, groupgap=0 2021-08-21 06:36:56,023 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=10, nframes=1, groupgap=0 2021-08-21 06:36:56,088 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done 2021-08-21 06:36:56,197 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:56,198 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} 2021-08-21 06:36:56,206 - stpipe.Detector1Pipeline.jump - WARNING - Cannot apply jump detection when NGROUPS<=2; 2021-08-21 06:36:56,206 - stpipe.Detector1Pipeline.jump - WARNING - Jump step will be skipped 2021-08-21 06:36:56,232 - stpipe.Detector1Pipeline.jump - INFO - Step jump done 2021-08-21 06:36:56,340 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:56,341 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} 2021-08-21 06:36:56,370 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits 2021-08-21 06:36:56,392 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits 2021-08-21 06:36:56,444 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols 2021-08-21 06:36:56,445 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal 2021-08-21 06:36:56,445 - stpipe.Detector1Pipeline.ramp_fit - INFO - Extracting gain subarray to match science data 2021-08-21 06:36:56,445 - stpipe.Detector1Pipeline.ramp_fit - INFO - Extracting readnoise subarray to match science data 2021-08-21 06:36:56,816 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 2 2021-08-21 06:36:56,816 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1 2021-08-21 06:36:56,884 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done 2021-08-21 06:36:56,998 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:56,999 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:57,027 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.95 2021-08-21 06:36:57,031 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:36:57,138 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). 2021-08-21 06:36:57,139 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} 2021-08-21 06:36:57,171 - stpipe.Detector1Pipeline.gain_scale - INFO - Rescaling by 1.95 2021-08-21 06:36:57,175 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done 2021-08-21 06:36:57,241 - stpipe.Detector1Pipeline - INFO - Saved model in nrs1_group_subarray_rateints.fits 2021-08-21 06:36:57,241 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1 2021-08-21 06:36:57,301 - stpipe.Detector1Pipeline - INFO - Saved model in nrs1_group_subarray_rate.fits 2021-08-21 06:36:57,301 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done -------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_group_subarray.fits HTTP/1.1" 200 11577600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_group_subarray.fits HTTP/1.1" 200 11577600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_group_subarray.fits HTTP/1.1" 200 11577600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/nrs1_group_subarray.fits HTTP/1.1" 200 11577600 DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:pipeline.py:161 Retrieving all substep parameters from CRDS DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS DEBUG stpipe:pipeline.py:170 Retrieving pipeline PARS-DETECTOR1PIPELINE parameters from CRDS INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe:pipeline.py:179 PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf INFO stpipe.Detector1Pipeline:step.py:321 Detector1Pipeline instance created. INFO stpipe.Detector1Pipeline.group_scale:step.py:321 GroupScaleStep instance created. INFO stpipe.Detector1Pipeline.dq_init:step.py:321 DQInitStep instance created. INFO stpipe.Detector1Pipeline.saturation:step.py:321 SaturationStep instance created. INFO stpipe.Detector1Pipeline.ipc:step.py:321 IPCStep instance created. INFO stpipe.Detector1Pipeline.superbias:step.py:321 SuperBiasStep instance created. INFO stpipe.Detector1Pipeline.refpix:step.py:321 RefPixStep instance created. INFO stpipe.Detector1Pipeline.rscd:step.py:321 RscdStep instance created. INFO stpipe.Detector1Pipeline.firstframe:step.py:321 FirstFrameStep instance created. INFO stpipe.Detector1Pipeline.lastframe:step.py:321 LastFrameStep instance created. INFO stpipe.Detector1Pipeline.linearity:step.py:321 LinearityStep instance created. INFO stpipe.Detector1Pipeline.dark_current:step.py:321 DarkCurrentStep instance created. INFO stpipe.Detector1Pipeline.reset:step.py:321 ResetStep instance created. INFO stpipe.Detector1Pipeline.persistence:step.py:321 PersistenceStep instance created. INFO stpipe.Detector1Pipeline.jump:step.py:321 JumpStep instance created. INFO stpipe.Detector1Pipeline.ramp_fit:step.py:321 RampFitStep instance created. INFO stpipe.Detector1Pipeline.gain_scale:step.py:321 GainScaleStep instance created. INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:295 Hostname: jwcalibdev.stsci.edu INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe:cmdline.py:296 OS: Linux INFO stpipe.Detector1Pipeline:step.py:367 Step Detector1Pipeline running with args ('/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits',). INFO stpipe.Detector1Pipeline:step.py:371 Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'}}} DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe.Detector1Pipeline:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0/nrs1_group_subarray.fits as <class 'jwst.datamodels.ramp.RampModel'> DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Detector1Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Detector1Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Detector1Pipeline:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.Detector1Pipeline:pipeline.py:280 Prefetching reference files for dataset: 'nrs1_group_subarray.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars'] INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for PERSAT reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for REFPIX reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RESET reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for RSCD reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPDENSITY reference file is 'N/A'. INFO stpipe.Detector1Pipeline:pipeline.py:288 Prefetch for TRAPPARS reference file is 'N/A'. INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... INFO stpipe.Detector1Pipeline:calwebb_detector1.py:68 Starting calwebb_detector1 ... DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Detector1Pipeline:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.Detector1Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Detector1Pipeline:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure DEBUG stpipe.Detector1Pipeline:calwebb_detector1.py:101 Processing a Near-IR exposure INFO stpipe.Detector1Pipeline.group_scale:step.py:367 Step group_scale running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray.fits>,). INFO stpipe.Detector1Pipeline.group_scale:step.py:371 Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.group_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:38 NFRAMES=3, FRMDIVSR=4 INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:38 NFRAMES=3, FRMDIVSR=4 INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:39 Rescaling all groups by 4/3 INFO stpipe.Detector1Pipeline.group_scale:group_scale.py:39 Rescaling all groups by 4/3 INFO stpipe.Detector1Pipeline.group_scale:step.py:928 Saved model in nrs1_group_subarray_group_scale.fits INFO stpipe.Detector1Pipeline.group_scale:step.py:470 Step group_scale done INFO stpipe.Detector1Pipeline.dq_init:step.py:367 Step dq_init running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.dq_init:step.py:371 Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dq_init:dq_init_step.py:63 Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dq_init:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.dq_init:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.dq_init:dq_initialization.py:66 Extracting mask subarray to match science data INFO stpipe.Detector1Pipeline.dq_init:dq_initialization.py:66 Extracting mask subarray to match science data DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.dq_init:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dq_init:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dq_init:step.py:470 Step dq_init done INFO stpipe.Detector1Pipeline.saturation:step.py:367 Step saturation running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.saturation:step.py:371 Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.saturation:saturation_step.py:25 Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0010.fits DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.saturation:saturation.py:66 Extracting reference file subarray to match science data INFO stpipe.Detector1Pipeline.saturation:saturation.py:66 Extracting reference file subarray to match science data DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.saturation:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.saturation:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 4432 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:115 Detected 4432 saturated pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:saturation.py:117 Detected 0 A/D floor pixels INFO stpipe.Detector1Pipeline.saturation:step.py:470 Step saturation done INFO stpipe.Detector1Pipeline.ipc:step.py:367 Step ipc running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.ipc:step.py:371 Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} INFO stpipe.Detector1Pipeline.ipc:step.py:401 Step skipped. INFO stpipe.Detector1Pipeline.ipc:step.py:470 Step ipc done INFO stpipe.Detector1Pipeline.superbias:step.py:367 Step superbias running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.superbias:step.py:371 Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:superbias_step.py:27 Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0109.fits DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.superbias:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.superbias:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.superbias:step.py:470 Step superbias done INFO stpipe.Detector1Pipeline.refpix:step.py:367 Step refpix running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.refpix:step.py:371 Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True} DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:56 use_side_ref_pixels = True INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:58 odd_even_columns = True INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:60 side_smoothing_length = 11 INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:62 side_gain = 1.000000 INFO stpipe.Detector1Pipeline.refpix:refpix_step.py:63 odd_even_rows = True DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout DEBUG stpipe.Detector1Pipeline.refpix:reffile_utils.py:40 Input exposure is a subarray readout INFO stpipe.Detector1Pipeline.refpix:step.py:470 Step refpix done INFO stpipe.Detector1Pipeline.linearity:step.py:367 Step linearity running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.linearity:step.py:371 Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.linearity:linearity_step.py:23 Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0008.fits DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.linearity:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.linearity:linearity.py:68 Extracting linearity subarray to match science data INFO stpipe.Detector1Pipeline.linearity:linearity.py:68 Extracting linearity subarray to match science data DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.linearity:reffile_utils.py:332 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.linearity:linearity.py:214 Pixels were flagged in the DQ of the reference file as NO_LIN_CORR ('Linearity correction not available'); for those affected pixels no linearity correction will be applied. DEBUG stpipe.Detector1Pipeline.linearity:linearity.py:214 Pixels were flagged in the DQ of the reference file as NO_LIN_CORR ('Linearity correction not available'); for those affected pixels no linearity correction will be applied. INFO stpipe.Detector1Pipeline.linearity:step.py:470 Step linearity done INFO stpipe.Detector1Pipeline.dark_current:step.py:367 Step dark_current running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.dark_current:step.py:371 Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'dark_output': None} DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:dark_current_step.py:28 Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0078.fits DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=2, nframes=3, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:53 Science data nints=1, ngroups=2, nframes=3, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=10, nframes=1, groupgap=0 INFO stpipe.Detector1Pipeline.dark_current:dark_sub.py:57 Dark data nints=1, ngroups=10, nframes=1, groupgap=0 DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:187 average dark frames 1 to 3 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:187 average dark frames 1 to 3 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:187 average dark frames 4 to 6 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:187 average dark frames 4 to 6 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=2, size=256,2048 DEBUG stpipe.Detector1Pipeline.dark_current:dark_sub.py:314 subtract_dark: nints=1, ngroups=2, size=256,2048 DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.dark_current:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.dark_current:step.py:470 Step dark_current done INFO stpipe.Detector1Pipeline.jump:step.py:367 Step jump running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.jump:step.py:371 Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0} DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". WARNING stpipe.Detector1Pipeline.jump:jump_step.py:36 Cannot apply jump detection when NGROUPS<=2; WARNING stpipe.Detector1Pipeline.jump:jump_step.py:37 Jump step will be skipped DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.jump:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.jump:step.py:470 Step jump done INFO stpipe.Detector1Pipeline.ramp_fit:step.py:367 Step ramp_fit running with args (<RampModel(1, 2, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.ramp_fit:step.py:371 Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'none'} DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:50 Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0006.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.Detector1Pipeline.ramp_fit:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:52 Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:63 Using algorithm = ols INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal INFO stpipe.Detector1Pipeline.ramp_fit:ramp_fit_step.py:64 Using weighting = optimal DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.ramp_fit:utils.py:1147 Extracting gain subarray to match science data INFO stpipe.Detector1Pipeline.ramp_fit:utils.py:1147 Extracting gain subarray to match science data DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:112 ref substrt1=1, subsize1=2048, substrt2=1, subsize2=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:165 sci substrt1=1, subsize1=2048, substrt2=897, subsize2=256 INFO stpipe.Detector1Pipeline.ramp_fit:utils.py:1153 Extracting readnoise subarray to match science data INFO stpipe.Detector1Pipeline.ramp_fit:utils.py:1153 Extracting readnoise subarray to match science data DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:258 science xstart=1, xsize=2048, ystart=897, ysize=256 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:266 reference xstart=1, xsize=2048, ystart=1, ysize=2048 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.ramp_fit:reffile_utils.py:274 slice xstart=0, xstop=2048, ystart=896, ystop=1152 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:119 Max segments=1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1310 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1310 Missing keyword DRPFRMS1, so setting to default value of 0 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1391 The number of pixels having insufficient data DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 2353: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1392 due to excessive CRs or saturation 2353: DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -1009.915039, 236.555313, 1832.609253, 221.597672 DEBUG stpipe.Detector1Pipeline.ramp_fit:utils.py:1393 Count rates - min, mean, max, std: -1009.915039, 236.555313, 1832.609253, 221.597672 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1445 Instrument: NIRSPEC DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 524288 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1446 Number of pixels in 2D array: 524288 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1447 Shape of 2D image: (256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (2, 256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1448 Shape of data cube: (2, 256, 2048) DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1449 Buffer size (bytes): 307200000 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 256 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1450 Number of rows per buffer: 256 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1451 Number of groups per integration: 2 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 INFO stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1452 Number of integrations: 1 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 0.362668 DEBUG stpipe.Detector1Pipeline.ramp_fit:ols_fit.py:1453 The execution time in seconds: 0.362668 DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.ramp_fit:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.ramp_fit:step.py:470 Step ramp_fit done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<ImageModel(256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline.gain_scale:step.py:367 Step gain_scale running with args (<CubeModel(1, 256, 2048) from nrs1_group_subarray_group_scale.fits>,). INFO stpipe.Detector1Pipeline.gain_scale:step.py:371 Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_subarray_run_pipeline0'} DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.Detector1Pipeline.gain_scale:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:gain_scale.py:32 Rescaling by 1.95 INFO stpipe.Detector1Pipeline.gain_scale:step.py:470 Step gain_scale done INFO stpipe.Detector1Pipeline:step.py:928 Saved model in nrs1_group_subarray_rateints.fits INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:calwebb_detector1.py:152 ... ending calwebb_detector1 INFO stpipe.Detector1Pipeline:step.py:928 Saved model in nrs1_group_subarray_rate.fits INFO stpipe.Detector1Pipeline:step.py:470 Step Detector1Pipeline done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_group_scale.fits HTTP/1.1" 200 11577600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_group_scale.fits HTTP/1.1" 200 11577600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_group_scale.fits HTTP/1.1" 200 11577600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_group_scale.fits HTTP/1.1" 200 11577600 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_subarray.py::test_nirspec_detector1[rate] | 0.40 | |
|
-------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_rate.fits HTTP/1.1" 200 10537920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_rate.fits HTTP/1.1" 200 10537920 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_rate.fits HTTP/1.1" 200 10537920 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_subarray/nrs1_group_subarray_rate.fits HTTP/1.1" 200 10537920 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_fixedslit_wcs | 7.07 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:37:55,371 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 06:37:55,552 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00023001001_01101_00001_nrs1_rate.fits',). 2021-08-21 06:37:55,553 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:37:55,751 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.02 deg 2021-08-21 06:37:55,751 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.01 deg 2021-08-21 06:37:55,751 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.44965731468948844 deg 2021-08-21 06:37:55,752 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2021-08-21 06:37:55,941 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] 2021-08-21 06:37:55,941 - stpipe.AssignWcsStep - INFO - Computing WCS for 5 open slitlets 2021-08-21 06:37:55,968 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.02 deg 2021-08-21 06:37:55,969 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.01 deg 2021-08-21 06:37:55,969 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.44965731468948844 deg 2021-08-21 06:37:55,970 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2021-08-21 06:37:55,978 - stpipe.AssignWcsStep - INFO - SPORDER= -1, wrange=[7e-07, 1.27e-06] 2021-08-21 06:37:56,094 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 1 2021-08-21 06:37:56,094 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:37:56,094 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 3 2021-08-21 06:37:56,094 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 4 2021-08-21 06:37:56,094 - stpipe.AssignWcsStep - INFO - There are 5 open slits in quadrant 5 2021-08-21 06:37:56,254 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} 2021-08-21 06:37:56,448 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2021-08-21 06:37:56,933 - stpipe.AssignWcsStep - INFO - Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits 2021-08-21 06:37:56,933 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/fs/jw00023001001_01101_00001_nrs1_rate.fits HTTP/1.1" 200 83937600 DEBUG stpipe:util.py:193 Opening jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:367 Step AssignWcsStep running with args ('jw00023001001_01101_00001_nrs1_rate.fits',). INFO stpipe.AssignWcsStep:step.py:371 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00023001001_01101_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.AssignWcsStep:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe.AssignWcsStep:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.AssignWcsStep:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:423 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.AssignWcsStep:nirspec.py:423 Slits projected on detector NRS1: ['S200A1', 'S200A2', 'S400A1', 'S1600A1', 'S200B1'] INFO stpipe.AssignWcsStep:nirspec.py:307 Computing WCS for 5 open slitlets INFO stpipe.AssignWcsStep:nirspec.py:307 Computing WCS for 5 open slitlets DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.02 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.01 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.44965731468948844 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:329 SPORDER= -1, wrange=[7e-07, 1.27e-06] INFO stpipe.AssignWcsStep:nirspec.py:329 SPORDER= -1, wrange=[7e-07, 1.27e-06] DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 5 open slits in quadrant 5 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 5 open slits in quadrant 5 DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_fixedslit pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0033.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0026.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:step.py:928 Saved model in jw00023001001_01101_00001_nrs1_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:470 Step AssignWcsStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 33776640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 33776640 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 33776640 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00023001001_01101_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 33776640 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fixedslit_wcs0/jw00023001001_01101_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fixedslit_wcs0/jw00023001001_01101_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fixedslit_wcs0/truth/jw00023001001_01101_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_fixedslit_wcs0/truth/jw00023001001_01101_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_mos_wcs | 3.77 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:38:02,838 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 06:38:03,007 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('msa_patt_num.fits',). 2021-08-21 06:38:03,009 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:38:03,273 - stpipe.AssignWcsStep - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 2021-08-21 06:38:03,305 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1789360195398331 deg 2021-08-21 06:38:03,305 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.2856041491031647 deg 2021-08-21 06:38:03,305 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.000963676070271049 deg 2021-08-21 06:38:03,306 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2021-08-21 06:38:03,461 - stpipe.AssignWcsStep - INFO - Slits projected on detector NRS1: [1] 2021-08-21 06:38:03,461 - stpipe.AssignWcsStep - INFO - Computing WCS for 1 open slitlets 2021-08-21 06:38:03,488 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.1789360195398331 deg 2021-08-21 06:38:03,488 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.2856041491031647 deg 2021-08-21 06:38:03,488 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.000963676070271049 deg 2021-08-21 06:38:03,489 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2021-08-21 06:38:03,497 - stpipe.AssignWcsStep - INFO - SPORDER= -1, wrange=[2.9e-06, 5.3e-06] 2021-08-21 06:38:03,613 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 1 2021-08-21 06:38:03,613 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 2 2021-08-21 06:38:03,613 - stpipe.AssignWcsStep - INFO - There are 1 open slits in quadrant 3 2021-08-21 06:38:03,622 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 4 2021-08-21 06:38:03,622 - stpipe.AssignWcsStep - INFO - There are 0 open slits in quadrant 5 2021-08-21 06:38:03,651 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V9621500100101_short_msa.fits'} 2021-08-21 06:38:03,731 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2021-08-21 06:38:03,908 - stpipe.AssignWcsStep - INFO - Saved model in msa_patt_num_assign_wcs.fits 2021-08-21 06:38:03,908 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done 2021-08-21 06:38:05,198 - stpipe - INFO - MSA metadata file not in reference files dict 2021-08-21 06:38:05,198 - stpipe - INFO - Getting MSA metadata file from MSAMETFL keyword 2021-08-21 06:38:05,208 - stpipe - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/V9621500100101_short_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/V9621500100101_short_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/V9621500100101_short_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/V9621500100101_short_msa.fits HTTP/1.1" 200 521280 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/msa_patt_num.fits HTTP/1.1" 200 50374080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/msa_patt_num.fits HTTP/1.1" 200 50374080 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/msa_patt_num.fits HTTP/1.1" 200 50374080 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/mos/msa_patt_num.fits HTTP/1.1" 200 50374080 DEBUG stpipe:util.py:193 Opening msa_patt_num.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening msa_patt_num.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:367 Step AssignWcsStep running with args ('msa_patt_num.fits',). INFO stpipe.AssignWcsStep:step.py:371 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:util.py:193 Opening msa_patt_num.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:193 Opening msa_patt_num.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': 'N/A', 'ifufore': 'N/A', 'ifuslicer': 'N/A'} DEBUG stpipe.AssignWcsStep:nirspec.py:604 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] DEBUG stpipe.AssignWcsStep:nirspec.py:604 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] INFO stpipe.AssignWcsStep:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe.AssignWcsStep:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:423 Slits projected on detector NRS1: [1] INFO stpipe.AssignWcsStep:nirspec.py:423 Slits projected on detector NRS1: [1] INFO stpipe.AssignWcsStep:nirspec.py:307 Computing WCS for 1 open slitlets INFO stpipe.AssignWcsStep:nirspec.py:307 Computing WCS for 1 open slitlets DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.1789360195398331 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.2856041491031647 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.000963676070271049 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:329 SPORDER= -1, wrange=[2.9e-06, 5.3e-06] INFO stpipe.AssignWcsStep:nirspec.py:329 SPORDER= -1, wrange=[2.9e-06, 5.3e-06] DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 1 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 2 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 1 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 1 open slits in quadrant 3 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 4 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 5 INFO stpipe.AssignWcsStep:nirspec.py:1019 There are 0 open slits in quadrant 5 DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V9621500100101_short_msa.fits'} INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0036.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V9621500100101_short_msa.fits'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:step.py:928 Saved model in msa_patt_num_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:470 Step AssignWcsStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/msa_patt_num_assign_wcs.fits HTTP/1.1" 200 50428800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/msa_patt_num_assign_wcs.fits HTTP/1.1" 200 50428800 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/msa_patt_num_assign_wcs.fits HTTP/1.1" 200 50428800 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/msa_patt_num_assign_wcs.fits HTTP/1.1" 200 50428800 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_wcs0/msa_patt_num_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_wcs0/msa_patt_num_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_wcs0/truth/msa_patt_num_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_mos_wcs0/truth/msa_patt_num_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe:nirspec.py:472 MSA metadata file not in reference files dict INFO stpipe:nirspec.py:472 MSA metadata file not in reference files dict INFO stpipe:nirspec.py:473 Getting MSA metadata file from MSAMETFL keyword INFO stpipe:nirspec.py:473 Getting MSA metadata file from MSAMETFL keyword DEBUG stpipe:nirspec.py:604 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] DEBUG stpipe:nirspec.py:604 msa_data with msa_metadata_id = 1 [(1, 1, 3, 319, 13, 1, 'N', 'OPEN', 0.0, 0.0, 1, 'Y')] INFO stpipe:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 INFO stpipe:nirspec.py:605 Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1 | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_f170lp] | 56.47 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:38:06,256 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 06:38:06,521 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00011001001_01120_00001_nrs1_rate.fits',). 2021-08-21 06:38:06,522 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:38:06,808 - stpipe.AssignWcsStep - INFO - gwa_ytilt is None deg 2021-08-21 06:38:06,808 - stpipe.AssignWcsStep - INFO - gwa_xtilt is None deg 2021-08-21 06:38:06,808 - stpipe.AssignWcsStep - INFO - gwa_xtilt not applied 2021-08-21 06:38:06,808 - stpipe.AssignWcsStep - INFO - gwa_ytilt not applied 2021-08-21 06:38:11,129 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2021-08-21 06:38:20,672 - stpipe.AssignWcsStep - INFO - Update S_REGION to POLYGON ICRS 5.845081040 -13.528159859 5.846349205 -13.528159859 5.846349205 -13.526980562 5.845081040 -13.526980562 2021-08-21 06:38:20,673 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2021-08-21 06:38:22,796 - stpipe.AssignWcsStep - INFO - Saved model in jw00011001001_01120_00001_nrs1_assign_wcs.fits 2021-08-21 06:38:22,796 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00001_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00001_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00001_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00001_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:util.py:193 Opening jw00011001001_01120_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening jw00011001001_01120_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:367 Step AssignWcsStep running with args ('jw00011001001_01120_00001_nrs1_rate.fits',). INFO stpipe.AssignWcsStep:step.py:371 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00011001001_01120_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00011001001_01120_00001_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.AssignWcsStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1354 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1354 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1360 gwa_ytilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1360 gwa_ytilt not applied DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:util.py:957 Update S_REGION to POLYGON ICRS 5.845081040 -13.528159859 5.846349205 -13.528159859 5.846349205 -13.526980562 5.845081040 -13.526980562 INFO stpipe.AssignWcsStep:util.py:957 Update S_REGION to POLYGON ICRS 5.845081040 -13.528159859 5.846349205 -13.528159859 5.846349205 -13.526980562 5.845081040 -13.526980562 INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:step.py:928 Saved model in jw00011001001_01120_00001_nrs1_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:470 Step AssignWcsStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 52024320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 52024320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 52024320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00001_nrs1_assign_wcs.fits HTTP/1.1" 200 52024320 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_f1700/jw00011001001_01120_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_f1700/jw00011001001_01120_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_f1700/truth/jw00011001001_01120_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_f1700/truth/jw00011001001_01120_00001_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:701 Input model type None does not match the requested model <class 'jwst.datamodels.image.ImageModel'>. Cannot skip updating from FITS headers. DEBUG stpipe:fits_support.py:701 Input model type None does not match the requested model <class 'jwst.datamodels.image.ImageModel'>. Cannot skip updating from FITS headers. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs1_opaque] | 54.14 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:39:02,892 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 06:39:03,743 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00011001001_01120_00002_nrs1_rate.fits',). 2021-08-21 06:39:03,745 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:39:04,032 - stpipe.AssignWcsStep - INFO - gwa_ytilt is None deg 2021-08-21 06:39:04,032 - stpipe.AssignWcsStep - INFO - gwa_xtilt is None deg 2021-08-21 06:39:04,032 - stpipe.AssignWcsStep - INFO - gwa_xtilt not applied 2021-08-21 06:39:04,032 - stpipe.AssignWcsStep - INFO - gwa_ytilt not applied 2021-08-21 06:39:04,041 - stpipe.AssignWcsStep - INFO - Combination CLOSE_G235H missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. 2021-08-21 06:39:07,288 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2021-08-21 06:39:14,803 - stpipe.AssignWcsStep - INFO - Update S_REGION to POLYGON ICRS 0.040606524 -0.001130752 0.042168460 -0.001130752 0.042168460 0.000810665 0.040606524 0.000810665 2021-08-21 06:39:14,805 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2021-08-21 06:39:17,572 - stpipe.AssignWcsStep - INFO - Saved model in jw00011001001_01120_00002_nrs1_assign_wcs.fits 2021-08-21 06:39:17,573 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00002_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00002_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00002_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00002_nrs1_rate.fits HTTP/1.1" 200 50368320 DEBUG stpipe:util.py:193 Opening jw00011001001_01120_00002_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening jw00011001001_01120_00002_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:367 Step AssignWcsStep running with args ('jw00011001001_01120_00002_nrs1_rate.fits',). INFO stpipe.AssignWcsStep:step.py:371 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00011001001_01120_00002_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00011001001_01120_00002_nrs1_rate.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.AssignWcsStep:fits_support.py:695 No ASDF information found. Cannot skip updating from FITS headers. DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': 'N/A', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is None deg INFO stpipe.AssignWcsStep:nirspec.py:1354 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1354 gwa_xtilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1360 gwa_ytilt not applied INFO stpipe.AssignWcsStep:nirspec.py:1360 gwa_ytilt not applied DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:776 Combination CLOSE_G235H missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. INFO stpipe.AssignWcsStep:nirspec.py:776 Combination CLOSE_G235H missing in wavelengthrange file, setting order to -1 and range to [1.66e-06, 3.17e-06]. DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': None, 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:util.py:957 Update S_REGION to POLYGON ICRS 0.040606524 -0.001130752 0.042168460 -0.001130752 0.042168460 0.000810665 0.040606524 0.000810665 INFO stpipe.AssignWcsStep:util.py:957 Update S_REGION to POLYGON ICRS 0.040606524 -0.001130752 0.042168460 -0.001130752 0.042168460 0.000810665 0.040606524 0.000810665 INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:step.py:928 Saved model in jw00011001001_01120_00002_nrs1_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:470 Step AssignWcsStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00002_nrs1_assign_wcs.fits HTTP/1.1" 200 52004160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00002_nrs1_assign_wcs.fits HTTP/1.1" 200 52004160 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00002_nrs1_assign_wcs.fits HTTP/1.1" 200 52004160 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00002_nrs1_assign_wcs.fits HTTP/1.1" 200 52004160 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_opaq0/jw00011001001_01120_00002_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_opaq0/jw00011001001_01120_00002_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_opaq0/truth/jw00011001001_01120_00002_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs1_opaq0/truth/jw00011001001_01120_00002_nrs1_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:701 Input model type None does not match the requested model <class 'jwst.datamodels.image.ImageModel'>. Cannot skip updating from FITS headers. DEBUG stpipe:fits_support.py:701 Input model type None does not match the requested model <class 'jwst.datamodels.image.ImageModel'>. Cannot skip updating from FITS headers. | |||
| Passed | miniconda3/envs/jwst_validation_notebooks/lib/python3.8/site-packages/jwst/regtest/test_nirspec_wcs.py::test_nirspec_ifu_wcs[nrs2_f170lp] | 54.34 | |
|
-------------------------------Captured log setup------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 ------------------------------Captured stderr call------------------------------ 2021-08-21 06:39:57,391 - stpipe.AssignWcsStep - INFO - AssignWcsStep instance created. 2021-08-21 06:39:58,939 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep running with args ('jw00011001001_01120_00003_nrs2_rate.fits',). 2021-08-21 06:39:58,941 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} 2021-08-21 06:39:59,306 - stpipe.AssignWcsStep - INFO - gwa_ytilt is 0.13924076 deg 2021-08-21 06:39:59,306 - stpipe.AssignWcsStep - INFO - gwa_xtilt is 0.35272044 deg 2021-08-21 06:39:59,306 - stpipe.AssignWcsStep - INFO - theta_y correction: 0.0010759379671938202 deg 2021-08-21 06:39:59,307 - stpipe.AssignWcsStep - INFO - theta_x correction: 0.0 deg 2021-08-21 06:40:03,741 - stpipe.AssignWcsStep - INFO - Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} 2021-08-21 06:40:11,869 - stpipe.AssignWcsStep - INFO - Update S_REGION to POLYGON ICRS 5.845079681 -13.528159956 5.846347622 -13.528159956 5.846347622 -13.526980662 5.845079681 -13.526980662 2021-08-21 06:40:11,870 - stpipe.AssignWcsStep - INFO - COMPLETED assign_wcs 2021-08-21 06:40:13,778 - stpipe.AssignWcsStep - INFO - Saved model in jw00011001001_01120_00003_nrs2_assign_wcs.fits 2021-08-21 06:40:13,778 - stpipe.AssignWcsStep - INFO - Step AssignWcsStep done -------------------------------Captured log call-------------------------------- DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00003_nrs2_rate.fits HTTP/1.1" 200 75551040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00003_nrs2_rate.fits HTTP/1.1" 200 75551040 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00003_nrs2_rate.fits HTTP/1.1" 200 75551040 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/nirspec/ifu/jw00011001001_01120_00003_nrs2_rate.fits HTTP/1.1" 200 75551040 DEBUG stpipe:util.py:193 Opening jw00011001001_01120_00003_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening jw00011001001_01120_00003_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". INFO stpipe.AssignWcsStep:step.py:321 AssignWcsStep instance created. INFO stpipe.AssignWcsStep:step.py:367 Step AssignWcsStep running with args ('jw00011001001_01120_00003_nrs2_rate.fits',). INFO stpipe.AssignWcsStep:step.py:371 Step AssignWcsStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': 'assign_wcs', 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.25, 'sip_degree': None, 'sip_max_inv_pix_error': 0.25, 'sip_inv_degree': None, 'sip_npoints': 32, 'slit_y_low': -0.55, 'slit_y_high': 0.55} DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00011001001_01120_00003_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.AssignWcsStep:util.py:193 Opening jw00011001001_01120_00003_nrs2_rate.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:assign_wcs_step.py:81 reference files used in assign_wcs: {'distortion': 'N/A', 'filteroffset': 'N/A', 'specwcs': 'N/A', 'regions': 'N/A', 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.13924076 deg INFO stpipe.AssignWcsStep:nirspec.py:1346 gwa_ytilt is 0.13924076 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.35272044 deg INFO stpipe.AssignWcsStep:nirspec.py:1347 gwa_xtilt is 0.35272044 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.0010759379671938202 deg INFO stpipe.AssignWcsStep:nirspec.py:1351 theta_y correction: 0.0010759379671938202 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg INFO stpipe.AssignWcsStep:nirspec.py:1357 theta_x correction: 0.0 deg DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} INFO stpipe.AssignWcsStep:nirspec.py:61 Created a NIRSPEC nrs_ifu pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0031.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0027.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': '/grp/crds/cache/references/jwst/jwst_nirspec_ifupost_0004.asdf', 'ifufore': '/grp/crds/cache/references/jwst/jwst_nirspec_ifufore_0003.asdf', 'ifuslicer': '/grp/crds/cache/references/jwst/jwst_nirspec_ifuslicer_0003.asdf'} DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe.AssignWcsStep:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". INFO stpipe.AssignWcsStep:util.py:957 Update S_REGION to POLYGON ICRS 5.845079681 -13.528159956 5.846347622 -13.528159956 5.846347622 -13.526980662 5.845079681 -13.526980662 INFO stpipe.AssignWcsStep:util.py:957 Update S_REGION to POLYGON ICRS 5.845079681 -13.528159956 5.846347622 -13.528159956 5.846347622 -13.526980662 5.845079681 -13.526980662 INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:assign_wcs.py:93 COMPLETED assign_wcs INFO stpipe.AssignWcsStep:step.py:928 Saved model in jw00011001001_01120_00003_nrs2_assign_wcs.fits INFO stpipe.AssignWcsStep:step.py:470 Step AssignWcsStep done DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/ HTTP/1.1" 302 0 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /ui/ HTTP/1.1" 200 1196 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00003_nrs2_assign_wcs.fits HTTP/1.1" 200 77189760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00003_nrs2_assign_wcs.fits HTTP/1.1" 200 77189760 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:971 Starting new HTTPS connection (1): bytesalad.stsci.edu:443 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00003_nrs2_assign_wcs.fits HTTP/1.1" 200 77189760 DEBUG stpipe:connectionpool.py:452 https://bytesalad.stsci.edu:443 "GET /artifactory/jwst-pipeline/dev/truth/test_nirspec_wcs/jw00011001001_01120_00003_nrs2_assign_wcs.fits HTTP/1.1" 200 77189760 DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs2_f1700/jw00011001001_01120_00003_nrs2_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs2_f1700/jw00011001001_01120_00003_nrs2_assign_wcs.fits as <class 'jwst.datamodels.ifuimage.IFUImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:709 FITS hash matches. Skipping FITS updating. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:fits_support.py:482 Skipping FITS updating completely. DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs2_f1700/truth/jw00011001001_01120_00003_nrs2_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:193 Opening /data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/pytest-of-iraf/pytest-4/test_nirspec_ifu_wcs_nrs2_f1700/truth/jw00011001001_01120_00003_nrs2_assign_wcs.fits as <class 'jwst.datamodels.image.ImageModel'> DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "STRICT_VALIDATION" cannot be found. Using default value of "False". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "VALIDATE_ON_ASSIGNMENT" cannot be found. Using default value of "True". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". DEBUG stpipe:util.py:175 Environmental "SKIP_FITS_UPDATE" cannot be found. Using default value of "None". | |||
